| Next changeset 1:434ca790f5a1 (2012-03-31) |
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Commit message:
Uploaded |
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added:
bed_closest.xml |
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| diff -r 000000000000 -r ae1369ab462a bed_closest.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bed_closest.xml Sat Mar 31 13:49:46 2012 -0400 |
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| @@ -0,0 +1,32 @@ +<tool id="bed_closest" name="bed_closest"> + <description>find closest intervals</description> + <command>bed_closest -a $inputa -b $inputb $strandness -d $no -t $tie> $output_data + </command> + <inputs> + <param name="inputa" type="data" format="interval,bam,bed,gff,vcf" label="Input A (-a)"/> + <param name="inputb" type="data" format="interval,bam,bed,gff,vcf" label="Input B (-b)"/> + <param name="strandness" type="select" label="Strand requirement" > + <option value="" selected="true"> none </option> + <option value="-s" > -s: closest feature on the same strand</option> + <option value="-S" > -S: closest feature on the opposite strand </option> + </param> + + <param name="no" label="Only look for non-overlaping features" type="boolean" truevalue="-no" falsevalue="" checked="False"/> + <param name="tie" type="select" label="Strand requirement" > + <option value="all" selected="true"> report all ties </option> + <option value="first" > report the first that occurred</option> + <option value="last" > report the last that occurred </option> + </param> + </inputs> + <outputs> + <data format="input" name="output_data"/> + </outputs> + <help> + +**What it does** + +This is a wrapper for closestBed. + + </help> +</tool> + |