| Previous changeset 1:e5ef70185d24 (2014-04-20) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 2e18fe350712147421228210013814bc0aeec120 |
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modified:
tool_dependencies.xml |
| b |
| diff -r e5ef70185d24 -r ae369c08a2a7 tool_dependencies.xml --- a/tool_dependencies.xml Sun Apr 20 17:39:23 2014 -0400 +++ b/tool_dependencies.xml Tue Mar 01 10:43:16 2016 -0500 |
| b |
| @@ -1,26 +1,21 @@ <?xml version="1.0"?> <tool_dependency> <package name="eigen3" version="3.1.3"> - <repository changeset_revision="b8ed0e76f501" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="baedf7f82cc3" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="openbabel" version="2.3.2"> <install version="1.0"> <actions> - <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action> - - <!-- populate the environment variables from the dependend repos --> + <action sha256sum="4eaca26679aa6cc85ebf96af19191472ac63ca442c36b0427b369c3a25705188" type="download_by_url">https://depot.galaxyproject.org/software/openbabel/openbabel_2.3.2_src_all.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="b8ed0e76f501" name="package_eigen_3_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="baedf7f82cc3" name="package_eigen_3_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="eigen3" version="3.1.3" /> </repository> </action> - <!-- - Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. - --> + <!-- Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. --> <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action> - <action type="shell_command">make</action> - <action type="shell_command">make install</action> + <action type="make_install" /> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> |