Repository 'poretools_stats'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/poretools_stats

Changeset 0:ae4c8446ce30 (2017-12-19)
Next changeset 1:4b17acf9b6ab (2020-01-19)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
added:
macros.xml
poretools_stats.xml
test-data/poretools-events-out1.tabular
test-data/poretools-events-out2.tabular
test-data/poretools-extract-out1.fasta
test-data/poretools-extract-out1.fastq
test-data/poretools-fastq-out1.fasta
test-data/poretools-fastq-out1.fastq
test-data/poretools-hist-out1.pdf
test-data/poretools-hist-out1.png
test-data/poretools-hist-out1.svg
test-data/poretools-in1.tar.bz2
test-data/poretools-nucdist-out1.tabular
test-data/poretools-nucdist-out2.tabular
test-data/poretools-occupancy-out1.pdf
test-data/poretools-occupancy-out1.png
test-data/poretools-qualdist-out1.tabular
test-data/poretools-qualdist-out2.tabular
test-data/poretools-qualpos-out1.pdf
test-data/poretools-qualpos-out1.png
test-data/poretools-squiggle-out1-1.pdf
test-data/poretools-squiggle-out1-1.png
test-data/poretools-squiggle-out1-2.pdf
test-data/poretools-squiggle-out1-2.png
test-data/poretools-stats-out1.tabular
test-data/poretools-stats-out2.tabular
test-data/poretools-stats-out3.tabular
test-data/poretools-stats-out4.tabular
test-data/poretools-stats-out5.tabular
test-data/poretools-tabular-out1.tabular
test-data/poretools-tabular-out2.tabular
test-data/poretools-tabular-out3.tabular
test-data/poretools-tabular-out4.tabular
test-data/poretools-tabular-out5.tabular
test-data/poretools-times-out1.tabular
test-data/poretools-times-out2.tabular
test-data/poretools-times-out3.tabular
test-data/poretools-times-out4.tabular
test-data/poretools-times-out5.tabular
test-data/poretools-winner-out1.tabular
test-data/poretools-winner-out2.tabular
test-data/poretools-winner-out3.tabular
test-data/poretools-winner-out4.tabular
test-data/poretools-yield-plot-out1.png
test-data/poretools-yield-plot-out2.png
test-data/poretools-yield-plot-out2.svg
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diff -r 000000000000 -r ae4c8446ce30 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,50 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">poretools</requirement>
+            <yield />
+        </requirements>
+    </xml>
+    <token name="@VERSION@">0.6.1a1</token>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btu555</citation>
+        </citations>
+    </xml>
+    <xml name="plot_options">
+        <param name="extension" type="select" label="File format for histogram">
+            <option value="png">PNG</option>
+            <option value="pdf">PDF</option>
+            <option value="svg">SVG</option>
+            <yield />
+        </param>
+        <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
+    </xml>
+    <xml name="image_output">
+        <data name="output" format="png">
+            <change_format>
+                <when input="extension" value="pdf" format="pdf" />
+                <when input="extension" value="svg" format="svg" />
+                <yield />
+            </change_format>
+        </data>
+    </xml>
+    <xml name="stat_options">
+        <param name="type" argument="--type" type="select" label="Filter by type of read">
+            <option value="all" selected="true">All</option>
+            <option value="fwd">Forward reads</option>
+            <option value="rev">Reverse reads</option>
+            <option value="fwd,rev">Forward and reverse</option>
+            <option value="2D">2D</option>
+            <option value="best">Best</option>
+        </param>
+    </xml>
+    <xml name="test_input">
+        <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
+    </xml>
+    <xml name="length_options">
+        <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
+        <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
+    </xml>
+</macros>
b
diff -r 000000000000 -r ae4c8446ce30 poretools_stats.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/poretools_stats.xml Tue Dec 19 14:51:34 2017 -0500
[
@@ -0,0 +1,57 @@
+<?xml version="1.0"?>
+<tool id="poretools_stats" name="Read length statistics" version="@VERSION@.0">
+    <description>from a set of FAST5 files</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive">
+    <![CDATA[
+        poretools stats --type $type $detailed '$input' > '$output'
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
+        <param name="detailed" argument="--full-tsv" type="boolean" truevalue="--full-tsv" falsevalue="" label="Output detailed statistics" />
+        <expand macro="stat_options" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <expand macro="test_input" />
+            <param name="type" value="fwd" />
+            <param name="detailed" value="true" />
+            <output name="output" file="poretools-stats-out1.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <param name="type" value="rev" />
+            <param name="detailed" value="false" />
+            <output name="output" file="poretools-stats-out2.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <param name="type" value="2D" />
+            <param name="detailed" value="true" />
+            <output name="output" file="poretools-stats-out3.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <param name="type" value="best" />
+            <param name="detailed" value="false" />
+            <output name="output" file="poretools-stats-out4.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <param name="type" value="all" />
+            <param name="detailed" value="true" />
+            <output name="output" file="poretools-stats-out5.tabular" ftype="tabular" />
+        </test>
+    </tests>
+    <help>
+        Collect read size statistics from a set of FAST5 files.
+    </help>
+    <expand macro="citations" />
+</tool>
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-events-out1.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-events-out1.tabular Tue Dec 19 14:51:34 2017 -0500
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-events-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-events-out2.tabular Tue Dec 19 14:51:34 2017 -0500
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b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-extract-out1.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-extract-out1.fasta Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,24 @@
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5
+GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5
+ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5
+CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5
+GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5
+ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5
+CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA
+>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5
+ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT
+>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5
+GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA
+>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5
+TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-extract-out1.fastq
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-extract-out1.fastq Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,48 @@\n+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\n+GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\n++\n+)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\n+ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\n++\n+""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\n+CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\n++\n+"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\n+GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\n++\n+))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\n+ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\n++\n+"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\n+CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAAC'..b'GTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\n++\n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n+@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\n+ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\n++\n+####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\n+GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\n++\n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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-fastq-out1.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-fastq-out1.fasta Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,12 @@
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
+GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
+ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC
+>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
+CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5
+GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5
+ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC
+>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5
+CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-fastq-out1.fastq
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-fastq-out1.fastq Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,24 @@
+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
+GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT
++
+)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((
+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
+ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC
++
+""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$
+@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-qualdist-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-qualdist-out2.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,16 @@
+( 7 111 1830 0.0606557377049
+) 8 261 1830 0.14262295082
+* 9 333 1830 0.181967213115
++ 10 307 1830 0.167759562842
+, 11 241 1830 0.131693989071
+- 12 211 1830 0.115300546448
+. 13 154 1830 0.0841530054645
+/ 14 106 1830 0.0579234972678
+0 15 62 1830 0.0338797814208
+1 16 11 1830 0.00601092896175
+2 17 12 1830 0.00655737704918
+3 18 7 1830 0.00382513661202
+4 19 3 1830 0.0016393442623
+5 20 6 1830 0.00327868852459
+6 21 3 1830 0.0016393442623
+8 23 2 1830 0.00109289617486
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-qualpos-out1.pdf
b
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-qualpos-out1.png
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Binary file test-data/poretools-qualpos-out1.png has changed
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-squiggle-out1-1.pdf
b
Binary file test-data/poretools-squiggle-out1-1.pdf has changed
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-squiggle-out1-1.png
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-squiggle-out1-2.pdf
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-squiggle-out1-2.png
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b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-stats-out1.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-stats-out1.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,29 @@
+files total reads 4
+files total base-called reads 4
+complement total reads 4
+complement total base pairs 1601
+complement mean 400.25
+complement median 420
+complement min 159
+complement max 602
+complement N25 602
+complement N50 464
+complement N75 376
+template total reads 4
+template total base pairs 1736
+template mean 434.00
+template median 433
+template min 212
+template max 657
+template N25 657
+template N50 494
+template N75 373
+twodirections total reads 4
+twodirections total base pairs 1830
+twodirections mean 457.50
+twodirections median 468
+twodirections min 202
+twodirections max 692
+twodirections N25 692
+twodirections N50 523
+twodirections N75 413
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-stats-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-stats-out2.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,9 @@
+total reads 4
+total base pairs 1601
+mean 400.25
+median 420
+min 159
+max 602
+N25 602
+N50 464
+N75 376
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-stats-out3.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-stats-out3.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,29 @@
+files total reads 4
+files total base-called reads 4
+complement total reads 4
+complement total base pairs 1601
+complement mean 400.25
+complement median 420
+complement min 159
+complement max 602
+complement N25 602
+complement N50 464
+complement N75 376
+template total reads 4
+template total base pairs 1736
+template mean 434.00
+template median 433
+template min 212
+template max 657
+template N25 657
+template N50 494
+template N75 373
+twodirections total reads 4
+twodirections total base pairs 1830
+twodirections mean 457.50
+twodirections median 468
+twodirections min 202
+twodirections max 692
+twodirections N25 692
+twodirections N50 523
+twodirections N75 413
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-stats-out4.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-stats-out4.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,9 @@
+total reads 4
+total base pairs 1830
+mean 457.50
+median 468
+min 202
+max 692
+N25 692
+N50 523
+N75 413
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-stats-out5.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-stats-out5.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,29 @@
+files total reads 4
+files total base-called reads 4
+complement total reads 4
+complement total base pairs 1601
+complement mean 400.25
+complement median 420
+complement min 159
+complement max 602
+complement N25 602
+complement N50 464
+complement N75 376
+template total reads 4
+template total base pairs 1736
+template mean 434.00
+template median 433
+template min 212
+template max 657
+template N25 657
+template N50 494
+template N75 373
+twodirections total reads 4
+twodirections total base pairs 1830
+twodirections mean 457.50
+twodirections median 468
+twodirections min 202
+twodirections max 692
+twodirections N25 692
+twodirections N50 523
+twodirections N75 413
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-tabular-out1.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-tabular-out1.tabular Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,13 @@\n+length\tname\tsequence\tquals\n+202\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tGAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\t)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+159\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\t""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+212\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tCTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\t"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+413\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tGCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\t))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+376\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\t"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+373\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tCATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGA'..b'GCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\t))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+)))\n+602\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\t####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+657\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tGTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\t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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-tabular-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-tabular-out2.tabular Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,13 @@\n+length\tname\tsequence\tquals\n+202\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tGAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\t)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+159\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\t""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+212\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tCTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\t"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+413\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tGCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\t))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+376\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\t"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+373\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tCATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGA'..b'GCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\t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n+602\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\t####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+657\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tGTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\t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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-tabular-out3.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-tabular-out3.tabular Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,13 @@\n+length\tname\tsequence\tquals\n+202\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tGAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\t)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+159\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\t""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+212\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tCTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\t"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+413\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tGCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\t))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+376\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\t"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+373\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tCATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGA'..b'GCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\t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n+602\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\t####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+657\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tGTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\t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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-tabular-out4.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-tabular-out4.tabular Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,13 @@\n+length\tname\tsequence\tquals\n+202\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tGAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\t)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+159\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\t""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+212\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tCTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\t"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+413\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tGCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\t))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+376\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\t"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+373\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tCATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGA'..b'GCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\t))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+)))\n+602\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\t####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+657\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tGTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\t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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-tabular-out5.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-tabular-out5.tabular Tue Dec 19 14:51:34 2017 -0500
b
b'@@ -0,0 +1,13 @@\n+length\tname\tsequence\tquals\n+202\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tGAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT\t)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((\n+159\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC\t""$"#$$&%$(&$"#$,<0-+(-\'%(#$%$&(&%$$$%\'-,(0\'$)%(&$"\'"#"\'"$#$"&#&$##&%$%\'%&\'00,&\'%#$##$$&"####%$\'#%(\'\'$$"$"($/=,)\'\'#$$\'%%\'$\'$)$%&$%()\'\'%%"%&%%%(*#(%"$&&(&##&)&$\n+212\t@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5\tCTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA\t"#\')-,;42;7<8544/22.**)-(*()*(\')%%&\'\'-*0..+)%%$"\'%\'*/\'%%&$&$%&##$%%(%)%/4)&#&\'#$#$#$*#$"#&$$#\'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%\')*/,,(((%$%\'$##","#,2\'\'#$$(\'(\'*()(+)\'\'&*)%$\'(%#&%4.01-17;2&&$\'12\'\')"%)&#$#"$)&\'#\n+413\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tGCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT\t))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)\n+376\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC\t"$###$$$#%#$"###$\'###$"&\'.)*(*+,-)$%$&/&$1(*),&&%%(\'$1)%##%%))+((%#$+&*%&&%$%%\'(*,--+()$+-+),#*\'%\')4:*\'$$*:,\')\'#%#%$&%$+++$*%$\'&&)&&&&\')\'+*-,+*\'&*$)%\'&&\'\')\'*)+,--\'&&\'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$\')(&(%##\'+,+,)\'((%%$%(*02*\')&))+\'"%$%%&\'$#&%$$(#$&$%%##\'&&,*))*((&%#(%*,(*(**$\'()%#*=?/-&*)*(##&%\'&+,(+*,)%\'&*+*+(\'%($#\'#*2+(\'%$$$&&%#$(+((\'\'\'(\')\'+30,$)*\'((*(\'&&%#$$%%&%\'\'$\'$%&&1/$\n+373\t@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5\tCATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGA'..b'GCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT\t))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+)))\n+602\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC\t####"##&%##$#+%%##%#\'%#$%$)-)\'($%&&((,()+-\'&\'(($%#(&%1-$##$\'$#%#\'08+\'$$%#"&$#&.+$%*#(\'%%##$$&&)))$(\'\'($((\'##+)6<4)\'(*()\',,(.\'&%&\'*($%&%##-,(\'#$$"$$\'04)&%$#(\'&%%%%\'$##(%%$*$\'$#\'\'\'&),%$%$%$%$$$*+%$%(%%&&\'\'%%(&%1-(%$"#%&&+**-,\'&\'\'((&#\'#$&%\'&%\'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$\'&+(#%\'&\'\'$##(2(%&$%$..(\'($&%%*.+\'$%%%),\')\'()%*\'&)%#&##"###&%%%\'*$\'++($$%#\'%%"($)&#$%\'\'&(**)$+*&)3-&%$$$#$)&$%\'%)*\')&&$%%&$#&($#+0&$"##%###\'%(%\'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$\'(\'&(&&&#%$$\'%%&\'%\'"%###$$#-)%#$#%\'%%$&\'\'\'"&%$$\'%$$)#(-*&)+09))\'#\'#%&%&$$(&%%%)(+()&%$(\'"""$"#&#\'$$\'./(*&&(\'%$#$$##\'%$&$&%$"&"))##$#\'$##"$)\'$\n+657\t@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5\tGTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT\t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n'
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-times-out1.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-times-out1.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,5 @@
+channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-times-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-times-out2.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,5 @@
+channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-times-out3.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-times-out3.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,5 @@
+channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-times-out4.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-times-out4.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,5 @@
+channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-times-out5.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-times-out5.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,5 @@
+channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40
+128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35
+126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-winner-out1.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-winner-out1.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,2 @@
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-winner-out2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-winner-out2.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,2 @@
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-winner-out3.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-winner-out3.tabular Tue Dec 19 14:51:34 2017 -0500
b
@@ -0,0 +1,2 @@
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
b
diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-winner-out4.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-winner-out4.tabular Tue Dec 19 14:51:34 2017 -0500
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@@ -0,0 +1,2 @@
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-yield-plot-out1.png
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-yield-plot-out2.png
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Binary file test-data/poretools-yield-plot-out2.png has changed
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diff -r 000000000000 -r ae4c8446ce30 test-data/poretools-yield-plot-out2.svg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/poretools-yield-plot-out2.svg Tue Dec 19 14:51:34 2017 -0500
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