Repository 'annovar_yaml_wrapper'
hg clone https://toolshed.g2.bx.psu.edu/repos/niels/annovar_yaml_wrapper

Changeset 13:aeb0873c9218 (2019-05-14)
Previous changeset 12:76c907b6eb0e (2019-05-14) Next changeset 14:94ddfdeb1d38 (2019-05-14)
Commit message:
Uploaded
modified:
annovar_yaml/annovar_yaml.xml
b
diff -r 76c907b6eb0e -r aeb0873c9218 annovar_yaml/annovar_yaml.xml
--- a/annovar_yaml/annovar_yaml.xml Tue May 14 06:10:06 2019 -0400
+++ b/annovar_yaml/annovar_yaml.xml Tue May 14 07:19:12 2019 -0400
[
@@ -8,7 +8,7 @@
         <requirement type="package" version="2.50">perl-getopt-long</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
+        perl --version && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
     ]]></command>
 
     <inputs>