| Previous changeset 87:2f423d8656ae (2016-10-28) Next changeset 89:c2efdf0c23a1 (2016-10-28) |
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Commit message:
Uploaded |
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added:
rrBLUP.xml |
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| diff -r 2f423d8656ae -r aef3240b58ac rrBLUP.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rrBLUP.xml Fri Oct 28 08:49:24 2016 -0400 |
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| @@ -0,0 +1,50 @@ +<tool id="rrBLUP" name="rrBLUP" version="1.0.0"> + <description>predict phenotype using a rrBLUP approach</description> + <command interpreter="Rscript"> + rrBLUP.R $config > ${output1} + </command> + + <inputs> + <param name="genotype" type="data" + label="genotype data" help="a tabular datatype containing the encoded genotypes" + /> + + <param name="phenotype" type="data" + label="phenotype data" help=" a tabular datatype containing the phenotypes " + /> + + <param name="eval" type="integer" value="0" + label="do evaluation" help=" whether to produce a model or to use folds to evaluate the tool. 1 means the tool will be evaluate (and a folds argument is required) any other value produces a model " + /> + + <param name="folds" type="data" optional="true" + label="folds" help=" OPTIONAL ARGUMENT path to a folds file containing folds indexes in a R list called /folds/ such as produced by the folds tools in OGHMA suite. " + /> + + <!-- <param name="model" type="text" + label="path to the output folds" help= " a path to a file where the results (depending on the chosen mode) will be writen" + /> --> + </inputs> + + <configfiles> + <configfile name="config"> +## Desc: this file is sourced in encode wrapper script +## as means to pass all galaxy params to R +"${genotype}" -> genotype +"${phenotype}" -> phenotype +"${output1}" -> out +"${eval}" -> evaluation +"${folds}" -> folds + + + </configfile> +</configfiles> + +<outputs> + <data format="tabular" name = "output1" label="rrBLUP output" /> +</outputs> + + <help> + make the classification using the rrBLUP method + </help> + </tool> \ No newline at end of file |