Repository 'presto_assemblepairs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/presto_assemblepairs

Changeset 4:af855eb44091 (2024-10-04)
Previous changeset 3:540fcbdac82e (2021-09-25)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
modified:
presto_assemblepairs.xml
b
diff -r 540fcbdac82e -r af855eb44091 presto_assemblepairs.xml
--- a/presto_assemblepairs.xml Sat Sep 25 18:33:43 2021 +0000
+++ b/presto_assemblepairs.xml Fri Oct 04 09:04:05 2024 +0000
b
@@ -1,6 +1,5 @@
 <tool id="presto_assemblepairs" name="pRESTO AssemblePairs" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Assembles paired-end reads into a single sequence.</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>presto_macros.xml</import>
         <xml name="align-params">
@@ -23,6 +22,7 @@
             </param>
         </xml>
     </macros>
+    <expand macro="bio_tools"/>
     
     <expand macro="requirements"/>
     
@@ -123,7 +123,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="join"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -135,7 +135,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_join_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="align"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -147,7 +147,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_align_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="reference"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -160,7 +160,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_reference_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="sequential"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>