| Previous changeset 1:57d45064f114 (2018-08-05) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit 2f9e5a51a632217e4966aa3b8e9d2b88a09a36e3" |
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modified:
gtfToBed12.xml |
| b |
| diff -r 57d45064f114 -r b026dae67fba gtfToBed12.xml --- a/gtfToBed12.xml Sun Aug 05 18:08:58 2018 -0400 +++ b/gtfToBed12.xml Thu Feb 20 13:45:34 2020 -0500 |
| [ |
| @@ -64,34 +64,34 @@ <outputs> <data name="bed_file" format="bed12" metadata_source="gtf_file" label="${tool.name} on ${on_string}: BED12"/> <data name="transcript_info_file" format="tabular" metadata_source="gtf_file" label="${tool.name} on ${on_string}: Table"> - <filter>advanced_options['infoOut']</filter> + <filter>(advanced_options['advanced_options_selector'] == 'advanced') and (advanced_options['infoOut'])</filter> </data> </outputs> <tests> - <test> + <test expect_num_outputs="1" > <param name="gtf_file" value="gtf2bed_test.gtf"/> <output name="bed_file" file="gtf2bed_test.bed" ftype="bed12"/> </test> - <test> + <test expect_num_outputs="1" > <param name="gtf_file" value="gtf2bed_test_missing_exon.gtf"/> <param name="advanced_options_selector" value="advanced" /> <param name="ignoreGroupsWithoutExons" value="true" /> <output name="bed_file" file="gtf2bed_test_missing_exon.bed" ftype="bed12"/> </test> - <test> + <test expect_num_outputs="1" > <param name="gtf_file" value="gtf2bed_test.gtf"/> <param name="advanced_options_selector" value="advanced" /> <param name="includeVersion" value="true" /> <output name="bed_file" file="gtf2bed_test_include_version.bed" ftype="bed12"/> </test> - <test> + <test expect_num_outputs="2" > <param name="gtf_file" value="gtf2bed_test.gtf"/> <param name="advanced_options_selector" value="advanced" /> <param name="infoOut" value="true" /> <output name="bed_file" file="gtf2bed_test.bed" ftype="bed12"/> <output name="transcript_info_file" file="gtf2bed_test_transcript_info.txt" ftype="tabular"/> </test> - <test> + <test expect_num_outputs="1" > <param name="gtf_file" value="gtf2bed_test.gtf"/> <param name="advanced_options_selector" value="advanced" /> <repeat name="sourcePrefixes"> @@ -99,7 +99,7 @@ </repeat> <output name="bed_file" file="gtf2bed_test_havana.bed" ftype="bed12"/> </test> - <test> + <test expect_num_outputs="1" > <param name="gtf_file" value="gtf2bed_test.gtf"/> <param name="advanced_options_selector" value="advanced" /> <repeat name="sourcePrefixes"> |