| Next changeset 1:0a71d32d6e51 (2018-06-05) |
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Commit message:
planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272 |
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added:
merge_activity_files.pl merge_activity_files.xml |
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| diff -r 000000000000 -r b06d2e06b740 merge_activity_files.pl --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/merge_activity_files.pl Thu May 31 11:24:57 2018 -0400 |
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| @@ -0,0 +1,25 @@ +#!/usr/bin/perl +use warnings; +use strict; +open(FH,$ARGV[0]) or die "Couldn't open file, $!"; +open(DH,">$ARGV[4]") or die "Couldn't open file, $!"; +my $first_line = scalar <FH>; +chomp($first_line); +$first_line = join(",",$first_line,"outcome\n"); +print DH $first_line; +while(<FH>){chomp($_); +my $line= join(",",$_,"$ARGV[1]\n"); +print DH $line; +} +close FH; +open(SH,$ARGV[2]) or die "Coudn't open file,$!"; +scalar <SH>; +while(<SH>){ +if($ARGV[1] ne $ARGV[3]){chomp($_); +my $line1= join(",",$_,"$ARGV[3]\n"); +print DH $line1; +} +else{ print ("There is error to assign activity\n");exit;} +} +close SH; +close DH; |
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| diff -r 000000000000 -r b06d2e06b740 merge_activity_files.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/merge_activity_files.xml Thu May 31 11:24:57 2018 -0400 |
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| @@ -0,0 +1,30 @@ +<tool id="merge_activity_files" name="Merge Activity files" version="1.0"> +<description>"Merge data files of Active and Inactive compounds"</description> +<stdio> + <exit_code range="1:" /> +</stdio> +<command interpreter="perl">merge_activity_files.pl $Input1 $Activity1 $Input2 $Activity2 $Merged_file</command> +<inputs> + <param format="csv" name="Input1" type="data" label="Descriptor File 1" help="Upload Active/Inactive descriptor file in csv format"/> + <param name="Activity1" type="text" value="Active" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc." > + <validator type="empty_field" message="This field can't be left blank"/> + </param> + <param format="txt" name="Input2" type="data" label="Descriptor File 2" help="Upload Active/Inactive descriptor file in csv format"/> + <param name="Activity2" type="text" value="Inactive" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc."> + <validator type="empty_field" message="This field can't be left blank"/> + </param> +</inputs> +<outputs> + <data format="csv" name="Merged_file" label="Merged Mega Descriptor File"/> +</outputs> +<tests> + <test> + <param name="Input1" value="actives_with_names.csv" /> + <param name="Activity1" value="Active" /> + <param name="Input2" value="inactives_with_names.csv" /> + <param name="Activity2" value="Inactive" /> + <output name="Merged_file" file="merged.csv" compare="sim_size" delta="90000000" /> + </test> +</tests> +<help>Provide descriptor files of active/positive and inactive/negative molecules and assign them properly.</help> +</tool> |