| Previous changeset 2:cfa9c047cda4 (2017-11-07) Next changeset 4:a7bbbf32da62 (2018-05-25) |
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Commit message:
planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit e6a9507eb198c6bf2c63ddae387c262bfc8dbd16 |
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modified:
hicup_filter.xml hicup_macros.xml |
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| diff -r cfa9c047cda4 -r b16228ec1540 hicup_filter.xml --- a/hicup_filter.xml Tue Nov 07 02:48:10 2017 -0500 +++ b/hicup_filter.xml Thu Nov 09 11:16:04 2017 -0500 |
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| @@ -1,12 +1,10 @@ <tool id="hicup_filter" name="Hicup Filter" version="@VERSION@.0"> - <description>classifies read pairs, identifying valid Hi-C di-tags.</description> - + <description>classifies read pairs, identifying valid Hi-C di-tags.</description> <macros> <import>hicup_macros.xml</import> </macros> <expand macro="requirements_hicup" /> <expand macro="stdio" /> - <command><![CDATA[ hicup_filter --digest '$digest' #if $advanced_options.longest: |
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| diff -r cfa9c047cda4 -r b16228ec1540 hicup_macros.xml --- a/hicup_macros.xml Tue Nov 07 02:48:10 2017 -0500 +++ b/hicup_macros.xml Thu Nov 09 11:16:04 2017 -0500 |
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| @@ -14,9 +14,9 @@ </stdio> </xml> <xml name="citation_hicup"> - <citations> - <citation type="doi">10.12688/f1000research.7334.1</citation> - </citations> + <citations> + <citation type="doi">10.12688/f1000research.7334.1</citation> + </citations> </xml> <xml name="reference_genome_macro"> <conditional name="reference_genome"> @@ -26,7 +26,7 @@ </param> <when value="indexed"> <param name="index" type="select" label="Select reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> - <options from_data_table="bowtie2_indices"> + <options from_data_table="bowtie2_indexes"> <filter type="sort_by" column="2"/> <validator type="no_options" message="No indexes are available for the selected input dataset"/> </options> @@ -62,7 +62,6 @@ <data name="dataset2_trunc" format="fastq" label="Hicup Dataset2 Truncation" from_work_dir="dataset2.trunc.fastq" /> <data name="dataset1_truncater_barchart" format="svg" label="Hicup Dataset1 Truncation Barchart.svg" from_work_dir="dataset1.truncation_barchart.svg" /> <data name="dataset2_truncater_barchart" format="svg" label="Hicup Dataset2 Truncation Barchart.svg" from_work_dir="dataset2.truncation_barchart.svg" /> - </xml> <xml name="input_files"> <param name="input_first_sequence" type="data" format="fastq" label="First input sequence" help="The first sequence:"/> |