Repository 'data_manager_fetch_genome_dbkeys_all_fasta'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_dbkeys_all_fasta

Changeset 7:b1bc53e9bbc5 (2017-06-15)
Previous changeset 6:16ab4dd6a0e5 (2017-04-07) Next changeset 8:14eb0fc65c62 (2019-10-16)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 8b8103fc4277014570a021cf3090b6986d17f7ff
modified:
data_manager/data_manager_fetch_genome_all_fasta_dbkeys.py
b
diff -r 16ab4dd6a0e5 -r b1bc53e9bbc5 data_manager/data_manager_fetch_genome_all_fasta_dbkeys.py
--- a/data_manager/data_manager_fetch_genome_all_fasta_dbkeys.py Fri Apr 07 06:43:39 2017 -0400
+++ b/data_manager/data_manager_fetch_genome_all_fasta_dbkeys.py Thu Jun 15 13:14:56 2017 -0400
b
@@ -205,7 +205,12 @@
 def _download_file(start, fh):
     tmp = tempfile.NamedTemporaryFile()
     tmp.write(start)
-    tmp.write(fh.read())
+    while True:
+        data = fh.read(CHUNK_SIZE)
+        if data:
+            tmp.write(data)
+        else:
+            break
     tmp.flush()
     tmp.seek(0)
     return tmp