Repository 'fastq_paired_unpaired'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired

Changeset 5:b38bbcbd458d (2015-08-05)
Previous changeset 4:09f9f0e29e47 (2015-08-05) Next changeset 6:f396701fbf32 (2017-05-10)
Commit message:
v0.1.2 belatedly declare Biopython dependency
modified:
tools/fastq_paired_unpaired/README.rst
tools/fastq_paired_unpaired/fastq_paired_unpaired.xml
added:
tools/fastq_paired_unpaired/tool_dependencies.xml
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diff -r 09f9f0e29e47 -r b38bbcbd458d tools/fastq_paired_unpaired/README.rst
--- a/tools/fastq_paired_unpaired/README.rst Wed Aug 05 11:06:38 2015 -0400
+++ b/tools/fastq_paired_unpaired/README.rst Wed Aug 05 11:17:49 2015 -0400
b
@@ -20,7 +20,8 @@
 ======================
 
 This should be straightforward, Galaxy should automatically download and install
-the tool from the Galaxy Tool Shed, and run the unit tests
+the tool from the Galaxy Tool Shed, and Biopython, and allow you to run the unit
+tests.
 
 
 Manual Installation
@@ -69,6 +70,7 @@
 v0.1.1  - Reorder XML elements (internal change only).
         - Use ``format_source=...`` tag.
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.1.2  - Belatedly declare Biopython dependency via Tool Shed.
 ======= ======================================================================
 
 
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diff -r 09f9f0e29e47 -r b38bbcbd458d tools/fastq_paired_unpaired/fastq_paired_unpaired.xml
--- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Wed Aug 05 11:06:38 2015 -0400
+++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Wed Aug 05 11:17:49 2015 -0400
b
@@ -1,7 +1,7 @@
-<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.1">
+<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.2">
     <description>using the read name suffices</description>
     <requirements>
-        <requirement type="package" version="1.64">biopython</requirement>
+        <requirement type="package" version="1.65">biopython</requirement>
         <requirement type="python-module">Bio</requirement>
     </requirements>
     <stdio>
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diff -r 09f9f0e29e47 -r b38bbcbd458d tools/fastq_paired_unpaired/tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/fastq_paired_unpaired/tool_dependencies.xml Wed Aug 05 11:17:49 2015 -0400
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@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.65">
+        <repository changeset_revision="dc595937617c" name="package_biopython_1_65" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>