| Previous changeset 4:576963db5f1b (2017-01-20) Next changeset 6:9495df9dd6ef (2020-11-04) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7 |
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modified:
test-data/alignment_result1.fasta test-data/chimera_result1.fasta test-data/chimera_uchimeout_result1.tabular test-data/clustering_blast6out_result2.tab test-data/clustering_centroids_result2.fasta test-data/clustering_centroids_result4.fasta test-data/clustering_notmatched_result2.fasta test-data/clustering_uc_result3.uc test-data/dereplication_result2.fasta test-data/dereplication_uc_result3.fasta test-data/search_fastapairs_result2.fasta test-data/sorting_result4.fasta vsearch_macros.xml |
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removed:
tool_dependencies.xml |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/alignment_result1.fasta --- a/test-data/alignment_result1.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/alignment_result1.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -1,5 +1,5 @@ -vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmpadk_l_yr/files/000/dataset_1.dat --alnout /tmp/tmpadk_l_yr/files/000/dataset_2.dat --query_cov 0.95 -vsearch v1.9.7_linux_x86_64, 7.7GB RAM, 4 cores +vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmp_3hOhj/files/000/dataset_1.dat --alnout /tmp/tmp_3hOhj/files/000/dataset_2.dat --query_cov 0.95 +vsearch v2.8.3_linux_x86_64, 15.5GB RAM, 4 cores Query >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15 %Id TLen Target @@ -44,11 +44,11 @@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Tgt 513 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 576 -Qry 582 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 645 +Qry 582 + GGCUCAACCcagggagugggggggauacugcggggcuagggggcgggaaaggccggggguaccc 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| -Tgt 577 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 640 +Tgt 577 + GGCUCAACCcagggagugggggggauacugcggggcuagggggcgggaaaggccgggggUACCC 640 -Qry 646 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 709 +Qry 646 + cagggguaggggcGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Tgt 641 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 704 |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/chimera_result1.fasta --- a/test-data/chimera_result1.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/chimera_result1.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -601,7 +601,7 @@ GTTGGCGCCGGGGCAGCCGCAGAGATTGGTCCGTCAATTTTATTTTCGAATTGTCACGGTCCACTTTGCTGTGGTACTGT GGCGGTCCGGAAGGTTTACTTTGAAGAAAATGGAGTGTTCAAAGCAGGCGTCTCGCAGCTGAACACATTAGCATGGAATA ATAAAATAGGACATCAGTGGATTGCTCGCCGGCCTCGTTTTTCTCTATGCGTTTTCTTGTCAGGAAGGGTTGTCGTGCAT -TTCGGTGTGCGGTGATTTTTTTTGGCGGGGCGTGTAGTGGGCGGGGATGTCGGGGCAGTTCTGCTTTTTTGTATGCATCC +TTCGGTGTGCGGTGAttttttttGGCGGGGCGTGTAGTGGGCGGGGATGTCGGGGCAGTTCTGCTTTTTTGTATGCATCC GTTTTGTTGGTTTTCAGGAGCTGGTGTAATGATTAATAGGGACTGTCGGGGGCATTAGTATTGCATTGTCAGAGGTGAAA TTCTTGGATTTATGCAAGACTAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCA >AB092933.1.1730_U|AB092933|U||Reference|11|Eukaryota|Excavata|Metamonada|Preaxostyla|Oxymonadida|Pyrsonymphidae|Dinenympha|Dinenympha+sp.|uncultured|uncultured+Dinenympha;size=1 @@ -610,7 +610,7 @@ TTGTTGGCGCTGAGGCAGCCGCAGGGATTGCTTCGTCAATTTTATTTTCGAATTGTCTTGGTCCACTTAACTGTGGTACT GAGGCGGTCCGGAAGGTTTACTTTGAAGAAAATGGAGTGTTCAAAGCAGGCGTTTCGCAGCTGAACACATTAGCATGGAA TAATAAAATAGGACATCAGTGGAGTGCTCGCCGGCTTCGTTATTCCCCGTACGTTTTTAAACTTTTGTCGGGTTGCTGTT -GTTCATTTCGGTGGGCTGCAGTGGCTTGGCAGGCGTGAGGGGGGGGCGTTGATGTCGGGGCGCCCCTGCTTTTTTGTATG +GTTCATTTCGGTGGGCTGCAGTGGCTTGGCAGGCGTGAggggggggCGTTGATGTCGGGGCGCCCCTGCTTTTTTGTATG CATCCGTTTTGTTGGTTTTCAGGAGCTGGTGTAATGATTAATAGGGACTGTCGGGGGCATTAGTATTGCATTGTCAGAGG TGAAATTCTTGGATTTATGCAAGACTAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCA >AB295041.1.1728_U|AB295041|U||Reference|11|Eukaryota|Alveolata|Dinophyta|Syndiniales|Dino-Group-I|Dino-Group-I-Clade-4|Duboscquella|Duboscquella+sp.|Duboscquella|Duboscquella+sp.;size=1 |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/chimera_uchimeout_result1.tabular --- a/test-data/chimera_uchimeout_result1.tabular Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/chimera_uchimeout_result1.tabular Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -64,7 +64,7 @@\n 0.0324\tKF029022.1.874_U|KF029022|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Metazoa|Nematoda|Chromadorea|Chromadorea_X|Spauligodon|Spauligodon+anolis|Spauligodon|Spauligodon+anolis;size=59\tAAIM02000198.20110.21904_UC|AAIM02000198|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Gibberella|Gibberella+moniliformis|Gibberella|Gibberella+moniliformis;size=154\tAAPE02054660.131.1675_U|AAPE02054660|U|||11|Eukaryota|Opisthokonta|Metazoa|Craniata|Craniata_X|Craniata_XX|Myotis|Myotis+lucifugus|Myotis|Myotis+lucifugus;size=172\tAAPE02054660.131.1675_U|AAPE02054660|U|||11|Eukaryota|Opisthokonta|Metazoa|Craniata|Craniata_X|Craniata_XX|Myotis|Myotis+lucifugus|Myotis|Myotis+lucifugus;size=172\t72.6\t69.8\t70.9\t73.5\t70.9\t28\t22\t61\t13\t3\t10\t1.7\tN\n 0.0272\tEF638549.1.1345_U|EF638549|U|||11|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Agaricomycotina|Tremellomycetes|Tremellomycetes_X|Tremellomycetes_X+sp.|uncultured|uncultured+Basidiomycota;size=58\tKC672135.1.1740_U|KC672135|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Ustilaginomycotina|Exobasidiomycetes|Malassezia|Malassezia+globosa|environmental_samples|uncultured+fungus;size=356\tAAIM02000198.20110.21904_UC|AAIM02000198|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Gibberella|Gibberella+moniliformis|Gibberella|Gibberella+moniliformis;size=154\tKC672135.1.1740_U|KC672135|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Ustilaginomycotina|Exobasidiomycetes|Malassezia|Malassezia+globosa|environmental_samples|uncultured+fungus;size=356\t89.2\t87.6\t87.6\t85.9\t87.6\t17\t11\t16\t12\t6\t6\t1.7\tN\n 0.0000\tEF695146.1.862_U|EF695146|U|||11|Eukaryota|Archaeplastida|Chlorophyta|Trebouxiophyceae|Chlorellales|Chlorellales_X|Nannochloris|Nannochloris+sp.|uncultured|uncultured+eukaryote;size=58\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n-0.0000\tHQ865998.1.868_U|HQ865998|U|||11|Eukaryota|Alveolata|Ciliophora|Cariacotrichea|Cariacotrichida|Cariacotrichidae|Cariacotrichidae_X|Cariacotrichidae_X+sp.|uncultured|uncultured+eukaryote;size=58\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0730\tHQ865998.1.868_U|HQ865998|U|||11|Eukaryota|Alveolata|Ciliophora|Cariacotrichea|Cariacotrichida|Cariacotrichidae|Cariacotrichidae_X|Cariacotrichidae_X+sp.|uncultured|uncultured+eukaryote;size=58\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tAAIM02000198.20110.21904_UC|AAIM02000198|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Gibberella|Gibberella+moniliformis|Gibberella|Gibberella+moniliformis;size=154\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\t82.3\t80.9\t80.0\t78.6\t80.9\t8\t0\t2\t27\t22\t37\t1.4\tN\n 0.0000\tAAAA02047326.277.2085_U|AAAA02047326|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Oryza|Oryza+sativa|Oryza|Oryza+sativa;size=55\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0663\tAB293491.1.2303_G|AB293491|G|||11|Eukaryota|Archaeplastida|Rhodophyta|Bangiophyceae|Bangiales|Bangiaceae|Pyropia|Pyropia+suborbiculata|Pyropia|Pyropia+suborbiculata;size=55\tHQ865593.1.872_U|HQ865593|U|||11|Eukaryota|Stramenopiles|Stramenopiles_X|Bicoecea|Bicoecea_X|Bicoecea_XX|Bicoecea_XXX|Bicoecea_XXX+sp.|uncultured|uncultured+eukaryote;size=265\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\t79.8\t77.2\t77.8\t76.0\t77.8\t7\t0\t3\t33\t24\t42\t2.'..b'ida|Glaucophyta|Glaucocystophyceae|Glaucocystophytes|Cyanophoraceae|Cyanophora|Cyanophora+paradoxa|Cyanophora|Cyanophora+paradoxa;size=3\tFR865776.2.1778_U|FR865776|U||s-import|12|Eukaryota|Archaeplastida|Glaucophyta|Glaucocystophyceae|Glaucocystophytes|Cyanophoraceae|Cyanophora|Cyanophora+paradoxa|Cyanophora|Cyanophora+paradoxa;size=3\t86.7\t80.8\t86.4\t84.8\t86.4\t1\t0\t0\t36\t14\t35\t0.3\tN\n 0.0635\tX81964.1.1813_U|X81964|U||Reference|11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Huperzia|Huperzia+phlegmaria|Huperzia|Huperzia+phlegmaria;size=1\tDQ629426.1.1686_U|DQ629426|U||Reference|11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Ceratopteris|Ceratopteris+sp.|Ceratopteris|Ceratopteris+sp.;size=2\tDQ629373.1.1683_U|DQ629373|U||Reference|11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Bazzania|Bazzania+trilobata|Bazzania|Bazzania+trilobata;size=4\tDQ629373.1.1683_U|DQ629373|U||Reference|11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Bazzania|Bazzania+trilobata|Bazzania|Bazzania+trilobata;size=4\t97.4\t94.8\t96.9\t95.3\t96.9\t4\t2\t4\t11\t1\t3\t0.5\tN\n-0.0471\tX85110.1.1799_U|X85110|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Brettanomyces|Brettanomyces+naardenensis|Brettanomyces|Brettanomyces+naardenensis;size=1\tAY520274.1.1737_U|AY520274|U||Reference|11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Candida|Candida+sp.|Candida|Candida+sp.;size=4\tEU011734.1.1722_U|EU011734|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Dekkera|Dekkera+bruxellensis|Dekkera|Dekkera+bruxellensis;size=4\tEU011734.1.1722_U|EU011734|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Dekkera|Dekkera+bruxellensis|Dekkera|Dekkera+bruxellensis;size=4\t95.5\t94.3\t94.6\t93.4\t94.6\t9\t6\t9\t4\t0\t0\t0.9\tN\n+0.0000\tX85110.1.1799_U|X85110|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Brettanomyces|Brettanomyces+naardenensis|Brettanomyces|Brettanomyces+naardenensis;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0000\tX89523.1.1795_U|X89523|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Saccharomycotina|Saccharomycetales|Kluyveromyces|Kluyveromyces+marxianus|Kluyveromyces|Kluyveromyces+marxianus;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0210\tX89868.1.1827_U|X89868|U||Reference|11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Riella|Riella+helicophylla|Riella|Riella+helicophylla;size=1\tAY688720.1.1781_U|AY688720|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Lunularia|Lunularia+cruciata|Lunularia|Lunularia+cruciata;size=2\tAY688729.1.1800_U|AY688729|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Reboulia|Reboulia+hemisphaerica|Reboulia|Reboulia+hemisphaerica;size=3\tAY688720.1.1781_U|AY688720|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Lunularia|Lunularia+cruciata|Lunularia|Lunularia+cruciata;size=2\t95.2\t94.7\t94.4\t94.4\t94.7\t9\t6\t11\t2\t0\t1\t0.5\tN\n 0.0251\tX90531.1.1830_U|X90531|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Echinodermata|Echinodermata_X|Echinodermata_XX|Polycheira|Polycheira+rufescens|Polycheira|Polycheira+rufescens;size=1\tFJ153755.1.1792_U|FJ153755|U|||11|Eukaryota|Opisthokonta|Metazoa|Echinodermata|Echinodermata_X|Echinodermata_XX|Echinodermata_XXX|Echinodermata_XXX+sp.|uncultured|uncultured+eukaryote;size=2\tDQ777082.1.1768_U|DQ777082|U|||11|Eukaryota|Opisthokonta|Metazoa|Echinodermata|Echinodermata_X|Echinodermata_XX|Cucumaria|Cucumaria+miniata|Cucumaria|Cucumaria+miniata;size=2\tDQ777082.1.1768_U|DQ777082|U|||11|Eukaryota|Opisthokonta|Metazoa|Echinodermata|Echinodermata_X|Echinodermata_XX|Cucumaria|Cucumaria+miniata|Cucumaria|Cucumaria+miniata;size=2\t90.4\t87.7\t89.8\t82.9\t89.8\t3\t1\t0\t31\t21\t14\t0.5\tN\n' |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/clustering_blast6out_result2.tab --- a/test-data/clustering_blast6out_result2.tab Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/clustering_blast6out_result2.tab Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -1,14 +1,3624 @@\n+b7ffa8f46cb16542d89dc5293ade2098;size=3629\tb235271fbc8a6c9d990037857189ee9a;size=22254\t99.7\t388\t0\t1\t1\t388\t1\t387\t-1\t0\n aff14fabb2213686a8bc18bf98edd8fd;size=3501\t7e02ae2e1e404d4e7c6035a6e374d29d;size=20728\t99.7\t375\t0\t1\t1\t375\t1\t374\t-1\t0\n+5bf3b429509ca7b31bbce32fa4d77e33;size=3298\tefbd11c972faa734253f779fc4eb2a64;size=5440\t99.7\t383\t1\t0\t1\t383\t1\t383\t-1\t0\n+8dbb6f1dafe133984c7c7d899a730e1c;size=2722\t78951b2d4ca30531381672a30be0978a;size=3655\t99.5\t381\t2\t0\t1\t381\t1\t381\t-1\t0\n+397a9be0ac23a54c504ad0cd4f86ddb9;size=2689\t4edf10a5e3aa4bd4ed28b1694727a060;size=3078\t99.7\t383\t1\t0\t1\t383\t1\t383\t-1\t0\n 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|
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/clustering_centroids_result2.fasta --- a/test-data/clustering_centroids_result2.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/clustering_centroids_result2.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -1,29973 +1,8256 @@\n->b235271fbc8a6c9d990037857189ee9a;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggtgcattccactggcctattgg\n-ttaactccaacttggctcatttggaatacgccatctttaggcagacccgtcgtggcattaggttgtcgtgatggttacgc\n-ctatcgtttactgtgaagaaattagggtgttcaaagcaggcttatgccatgaatacgttagcatggaataatgagatagg\n-atttcggtactattttgttggtttgtgtacggaaataatgattaacaggaacagtgttgtgggtattcgtatttcgttgt\n-cagaggtgaaattcttggatttacgaaagacgaacgactgcgaaagcatttaccaaggatgttttca\n->7e02ae2e1e404d4e7c6035a6e374d29d;size=4;\n-agctccaatagcgtatactaatgttgttgcagttaaaaagctcgtagtcggatttcagtaggctcagttaagtctcttct\n-attgagttctttatgggcctgcttctttgacagaaacttctatgttattcatttagcgtgggtagcgactgtctctttta\n-ctttgagaaaattagagtgttcaaagcaggtattcgcctgaatattactcttggaataatgctataagactttggttcta\n-atgtattggtgattgggaccagagtaatgattgatagggacggttggggtcttacgtactgcaaagcgagaggtgaaatt\n-cttggacctttgtatgacgaacaactgcgaaagcattggactaggacgttcccg\n->39392bbb9626a64e6663c05b70293e7c;size=1;\n-agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcggcggactgagggcggtttgcttg\n-ctagtattactgccctatagtccgtagttttgccagaggtttcggggtgctcttaatcgagtgtcccgggatgctggcag\n-gtttactttgaaaaaattagagtgctcaaagcaggctattacgcctgaatattcgtgcatggaataatagaataggaagt\n-cgtttctattttgttggttttcggaaatcgacttaatgattaatagggacagtcgggggcatttgtattcaaacgacaga\n-ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n->b970fcbdd71ad2a333f702c7ecfe7114;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggcaggagcgaccggtcacacac\n-tctgtgcgtgaacttgtgttgtctctggccatccttggggagatcctgtttggcattaagttgtcgggcaggggataccc\n-atcgtttactgtgaaaaaattagagtgtttaaagcaggcttatgccgttgaatatattagcatggaataataagatagga\n-cttcggaactattttgttggtttgcgttacgaagtaatgattaatagggacagttgggggtattcgtatttcattgtcag\n-aggtgaaattcttggatttctgaaagacgaactactgcgaaagcatttaccaaggatgttttca\n->a9d668eae33f9fd4484585d9fe52b05e;size=1;\n-agctccaatagcgtatactaaagttgttgcggttaaaaagctcgtagttggatcttggagtgtgagtgaatggtcgatcg\n-aaagattgtactgttcggcacactcttctcttcggttgcgtgtgtagtgcccttaactgagtgctgcactcgaccggaat\n-ttttaccttgaaaaaattagagtgttcaaagcagacctgattatgtctgaatattcgtgcatggaataataaaataagaa\n-cttggttctattttattggttttcggaactcgagttaatgattaagagggacagacgggggcatccgtactctgccgtta\n-gaggtgaaattcttggatcggcggaagacgcgcaactgcgaaagcatttgccaagaatgttttct\n->da17e1a54e88120e294c7e68e350f47f;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggggggcgcagattgtccgcaga\n-cgcgtgtgcagatgcgccctttcatccttctgttaacgtctcttgacattcatttgttggtggcgggctcagatatttta\n-ccttgagaaaattagagtgtttcaggcaggctcgcgtcggaatacattagcatggaataatagaataggactcagtcctc\n-ctttgttggtttgaggggtcagagtaatggttaatagggatagttgggggcattagtatttgactgtcagaggtgaaatt\n-ctcggatttgttaaagactaacttatgcgaaagcatttgccaaggatgttttca\n->efbd11c972faa734253f779fc4eb2a64;size=1;\n-agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcaacagccttgaagcggttaacttt\n-gtagttttactgctttgtaggctgtgcttttgctggaggtttaggggtgctcttgatcgagtgtctctggatgccagcag\n-gtttactttgaaaaaattagagtgctcaaagcaggctaaaatgcctgaatattcgtgcatggaataatagaataggatgt\n-cgatcctattttgttggttttcgggactcgacataatgataaatagggacagtcgggggcatttgtattcaaacgacaga\n-ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n->aecd442213d89e3f43949aee5040a3ed;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n-gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n-cgtttactttgaaaaaattagagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggacttt\n-ggtcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagagg\n-tgaaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n->ea64ae1d6dddc2146105a882229c81bb;size=1;\n-agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatctcggcgggcagggggtggttcgctct\n-tcagcgctactgccccgctttgcccgtgtgattggcggaggtttcggggtgctcttcgttgagtgactcggagcgccgtc\n-aggtttactttgaaaaaattagagtgctcaaagcaggcttttcacgcttgaatattcgtgcatggaataatggaatagga\n-actcgtttctattttgttggttttcggaaatcgagttaatgattaacagggacaattgggggcattagtattcagacgac\n-agaggtgaaattcttggaccgtctgaagactgactactgcgaaagcatttgccaagagtgttttca\n->26d2046e1a0f79450d6233ef29aab44e;size=1;\n-agctccaatagcgtatat'..b'AG\n+GTGAAATTCTTGGATCGCAGCAAGACGAACTAACGCGAAAGCATTTGTCAAGAATGTTTTTG\n+>8b580ba225c9ae8df06f925310b59e4e;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTCTGAGTCTTGGCCGGCGGTGAGCGTCCGTGGC\n+TGAATTTTTTGGTCGCGCGCATGCGATACCCGCTAGCCATTGTACTTCGGAGGAACACGGCTTGTGCTTTTCATTAAGTG\n+CTCGTGGGATTCCGATAGTTTACTTTGAGAAAAATAGAGTGTTCAAAGCAGGCGTTTTTGCCGTTGAATACATTAGCATG\n+GGATAATGGAATAGGACATTGGTTCTATTTTGTTGGTTTACGGACCGATGTAATGATTAATAGGAACAGTTGGGGACATT\n+TATATTCCATGGCTAGAGGTGAAATTCTTGGATTCATGGAAGATAAACTATTGCGAAAGCATTTGTCAAAGATGTTTTCA\n+>8e9a6185e05151042cc0beaadb77eec0;size=1\n+AGCTCCGGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCATTGCTTTTCAGCTAACCTG\n+CTCGCTAGTCGAGTTTGTGTTTGGTCTGAAGCTGCCATCCTTCCAGAGACCTTGTCATACCCTTCATTGGGCCGTGATAG\n+TGATCTGGAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATCTCGCTGTGAATACATTAGCATGGAATAAT\n+AATTTAGGACTTCTGTTCCTATTTTGTTGGTTCTAGGACTGAAGTAATGATTGATAGGGATAGTTGGGGGTGCTCGTATT\n+GAATGGCCAGAGGTGAAATTCTTGGATTCATTCAAGACGAACTTATGCGAAAGCATTCACCAAGGATGTCTTCT\n+>a23d5d75d02581e3115e23a6a2fe031b;size=1\n+AGCTCCGCCAGTGTATATCTATGCTGCTGCGGTTAAAAAGCTCGTAGTTGGATCTGCGTGCTAGAGACTGGTCCACCTAT\n+GGGTGTGCACTGGATCTCAGCACTGAATCGTTGGTTTTCTCTTTATGCCTTTAACCGGGTGTACTGAGTGACTAACATGT\n+TTACTTTGAAAAAATTAGAGTGCTTAAAACAAGCGATTTGCTTGAATATTCGTGCATGGAATAATAGAATAGGACCTTGG\n+TTCTATTTTGTTGGTTTTCGGAACACAAGGTAATGATTAAGAGGGACAGACGGGGGCATTCATATTTCGACGTTAGAGGT\n+GAAATTCTTGGATCGTCGAAAGATGCACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n+>a9a1fbfca4ade41ce328b07594f11688;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTTGAGGACAGCCGGTCCGCACT\n+ATGTGCGTGTATCTGGTTTGGCCTTGGCATCCTCTTGAGGAACGTTTCTGCGCTTAATTGCGTGGAGCGGTATTCAAGAC\n+TTTTACTTTGAGGAAATTAGAGTGTTCACGGCAGGCAAGCGCCTTGAATACATTAGCATGGAATGATAATATAGGATCTT\n+GGTTCTATTTTGTTGGTTTCTAGGGCTAAGGTAATGATTAATAGGGATAATTGGGGGCATTTGTATTAACGCGTCAGAGG\n+TGGAATTCTTGGATTGCGTTACGACAAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>aa026d2676cecd33e4a002dbb455ada8;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGACTGAGGGCGGTTTGCTTG\n+CTAGTATTACTGCCCTATAGTCCGTAGTTTTGCCAGAGGTTTCGGGTGCTCTTAATCGAGTGTCCCGGGATGCTGGCAGG\n+TTTACTTTGAAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCATGGAATAATAGAATAGGAAGT\n+CGTTTCTATTTTGTTGGTTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGGCATTTGTATTCAAACGACA\n+GAGGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n+>b0f7bb5e2512ce1b8140fd67d40f0ca2;size=1\n+AGCTCCAGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGATATTACGCCCTAGTCTGCCGC\n+AAGTTGTGGTTTGTGCTGGTGTGCGTTTATCTTCCTTCTAGAAAGGCTTGTGGCGTCTTTGTGCGTCCACTTGTTCGATC\n+TAGATCTTTTACTTTGAATAAATTAGAGTGTTCAAAGCAGGCAATCGCTGTGAATACATTAGCATGGAATAATAATATAG\n+GACTTCGATTCTATTTTGTTGGTTTTCAGAACGAAGTAATGATTGATAGGGATAGTTGGGGGTGCTAGTATTGGCCGGCT\n+AGAGGTGAAATTCGTATTCGGCTAAGACTAACTTATGCGAAAGCATTCACCAAGGATGTCTTCT\n+>bdaad40d1a72de52eebf25010f5b300f;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n+CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n+ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n+AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n+TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>c72b7875fe56dca4f7d9c24360650a25;size=1\n+AGCTCTAATAGCGTATATTAATGTTGTTGCGGTTAAAAAGCTCGTGGTTGAAAGTGAAGGGTAAAACTGGATCTGGGGAA\n+ACCCATTTGCAGTTATTAGCGCGTTTTAAGGTATTCGGTTTACTTGACTTAATTGTCAAATAAGCTTAACGGATGCCTTG\n+TAGCTACTCTGATAAAATCAGAGTGCTTAAAACAAGCCTTTAAGCTTGTATATTTGTGCATAGTATAGCAAAATATGACC\n+TAAGCTAATAAAGATGGTGATTAGCCGTGGTAATGATTAAAAGGGATTGTCGGAGGCATTTGTATTTGAAAGTGAGAGGT\n+GAAATTCTATGATCTTTCAAAGACAAACTAGCGCGAAAGCATTTGCCAAGTATGTTTTCA\n+>c8403bc529537d14794709f99640ac8f;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n+GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n+CGTTTACTTGAAAAAATTGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTTGG\n+TCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTG\n+AAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n' |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/clustering_centroids_result4.fasta --- a/test-data/clustering_centroids_result4.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/clustering_centroids_result4.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -1,29961 +1,7871 @@\n->b235271fbc8a6c9d990037857189ee9a;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggtgcattccactggcctattgg\n-ttaactccaacttggctcatttggaatacgccatctttaggcagacccgtcgtggcattaggttgtcgtgatggttacgc\n-ctatcgtttactgtgaagaaattagggtgttcaaagcaggcttatgccatgaatacgttagcatggaataatgagatagg\n-atttcggtactattttgttggtttgtgtacggaaataatgattaacaggaacagtgttgtgggtattcgtatttcgttgt\n-cagaggtgaaattcttggatttacgaaagacgaacgactgcgaaagcatttaccaaggatgttttca\n->7e02ae2e1e404d4e7c6035a6e374d29d;size=4;\n-agctccaatagcgtatactaatgttgttgcagttaaaaagctcgtagtcggatttcagtaggctcagttaagtctcttct\n-attgagttctttatgggcctgcttctttgacagaaacttctatgttattcatttagcgtgggtagcgactgtctctttta\n-ctttgagaaaattagagtgttcaaagcaggtattcgcctgaatattactcttggaataatgctataagactttggttcta\n-atgtattggtgattgggaccagagtaatgattgatagggacggttggggtcttacgtactgcaaagcgagaggtgaaatt\n-cttggacctttgtatgacgaacaactgcgaaagcattggactaggacgttcccg\n->39392bbb9626a64e6663c05b70293e7c;size=1;\n-agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcggcggactgagggcggtttgcttg\n-ctagtattactgccctatagtccgtagttttgccagaggtttcggggtgctcttaatcgagtgtcccgggatgctggcag\n-gtttactttgaaaaaattagagtgctcaaagcaggctattacgcctgaatattcgtgcatggaataatagaataggaagt\n-cgtttctattttgttggttttcggaaatcgacttaatgattaatagggacagtcgggggcatttgtattcaaacgacaga\n-ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n->b970fcbdd71ad2a333f702c7ecfe7114;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggcaggagcgaccggtcacacac\n-tctgtgcgtgaacttgtgttgtctctggccatccttggggagatcctgtttggcattaagttgtcgggcaggggataccc\n-atcgtttactgtgaaaaaattagagtgtttaaagcaggcttatgccgttgaatatattagcatggaataataagatagga\n-cttcggaactattttgttggtttgcgttacgaagtaatgattaatagggacagttgggggtattcgtatttcattgtcag\n-aggtgaaattcttggatttctgaaagacgaactactgcgaaagcatttaccaaggatgttttca\n->a9d668eae33f9fd4484585d9fe52b05e;size=1;\n-agctccaatagcgtatactaaagttgttgcggttaaaaagctcgtagttggatcttggagtgtgagtgaatggtcgatcg\n-aaagattgtactgttcggcacactcttctcttcggttgcgtgtgtagtgcccttaactgagtgctgcactcgaccggaat\n-ttttaccttgaaaaaattagagtgttcaaagcagacctgattatgtctgaatattcgtgcatggaataataaaataagaa\n-cttggttctattttattggttttcggaactcgagttaatgattaagagggacagacgggggcatccgtactctgccgtta\n-gaggtgaaattcttggatcggcggaagacgcgcaactgcgaaagcatttgccaagaatgttttct\n->da17e1a54e88120e294c7e68e350f47f;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggggggcgcagattgtccgcaga\n-cgcgtgtgcagatgcgccctttcatccttctgttaacgtctcttgacattcatttgttggtggcgggctcagatatttta\n-ccttgagaaaattagagtgtttcaggcaggctcgcgtcggaatacattagcatggaataatagaataggactcagtcctc\n-ctttgttggtttgaggggtcagagtaatggttaatagggatagttgggggcattagtatttgactgtcagaggtgaaatt\n-ctcggatttgttaaagactaacttatgcgaaagcatttgccaaggatgttttca\n->efbd11c972faa734253f779fc4eb2a64;size=1;\n-agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcaacagccttgaagcggttaacttt\n-gtagttttactgctttgtaggctgtgcttttgctggaggtttaggggtgctcttgatcgagtgtctctggatgccagcag\n-gtttactttgaaaaaattagagtgctcaaagcaggctaaaatgcctgaatattcgtgcatggaataatagaataggatgt\n-cgatcctattttgttggttttcgggactcgacataatgataaatagggacagtcgggggcatttgtattcaaacgacaga\n-ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n->aecd442213d89e3f43949aee5040a3ed;size=1;\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n-gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n-cgtttactttgaaaaaattagagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggacttt\n-ggtcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagagg\n-tgaaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n->ea64ae1d6dddc2146105a882229c81bb;size=1;\n-agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatctcggcgggcagggggtggttcgctct\n-tcagcgctactgccccgctttgcccgtgtgattggcggaggtttcggggtgctcttcgttgagtgactcggagcgccgtc\n-aggtttactttgaaaaaattagagtgctcaaagcaggcttttcacgcttgaatattcgtgcatggaataatggaatagga\n-actcgtttctattttgttggttttcggaaatcgagttaatgattaacagggacaattgggggcattagtattcagacgac\n-agaggtgaaattcttggaccgtctgaagactgactactgcgaaagcatttgccaagagtgttttca\n->26d2046e1a0f79450d6233ef29aab44e;size=1;\n-agctccaatagcgtatat'..b'GTCAGAGGT\n+GAAATTCTTGGATTTATGAAAGATGAACTTATGCGAAAGCATTTACCAAGGATGTTTTCA\n+>829a92af0a7cb2a6faf53a31f74ac32e;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCCGGGCACCGATGTCCGCTGA\n+TCGCGTGCGCAGAGGTGCCCCGCCATCCTTCTGTTAACTCAGCCACTGGATTTACTTCCGGGTTGAGGGCTCAGATATTT\n+TACCTTGAGAAAATTAGAGTGTTTCAGGCAGGCTTGCGCCGGAATACATTAGCATGGAATAATGGAATAGGACTTCCGCC\n+TCTTCTGTTGGTCTGAGGGGTGAAAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTACTTAACTGTCAGAGGTGAAA\n+TTCTCGGATTAGTTAAAGACTAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>85a816fc48b95e011c25738668ff92f5;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTGGTAGGCAGCCGGTCCACACT\n+ATGTGTGAGTATCTGGTTCGGCTACTGCATCCTCCTGAGGAACGTTGGTGCGCTTCACTGCGTGGCACGGTATTCAGGAC\n+TTTTACTTTGAGGAAATTAGAGTGTTCACGGCAGGCGTTTGCCCTGAATATATTAGCATGGAATAATGATATAGGATCCA\n+CGTCCTATTTTGTTGGTTTCTAGGACGAGGATAATGATTAATAGGGATAATTGGGGGCATTCGTATTAACACGTCAGAGG\n+TGGAATTCTTGGATTGTGTTACGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>88ee2d113b38cac2a65f4b8fdefc85e6;size=1\n+AGCCTTCACAAGCATATACAAATGCTGTTGCGTTTAAAAAGCTCGTAGTTGAATTTGTTGTGTACTGCTCTAAAATCATA\n+CAAAATTGTATGTAAGAGTAAGTAACCATCGTGTTGTCGAGTTTACTTGCGCTTAACTGTGATGAGTTTTTGAGATGTAC\n+GCTTTACTTTGAGAAAATTTGGGTGTTTAAAGCAGCCTTTGGGTGTGAATGCTGTAGCATGGAATAATAGAAAATGACTG\n+TATACCCGTTTGGTTGGTCTTGGGTTATGTAGTAATGATTGAAAAGGACAGGCGGGGACATTCGAATTGTTGCGTTAGAG\n+GTGAAATTCTTGGATCGCAGCAAGACGAACTAACGCGAAAGCATTTGTCAAGAATGTTTTTG\n+>8b580ba225c9ae8df06f925310b59e4e;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTCTGAGTCTTGGCCGGCGGTGAGCGTCCGTGGC\n+TGAATTTTTTGGTCGCGCGCATGCGATACCCGCTAGCCATTGTACTTCGGAGGAACACGGCTTGTGCTTTTCATTAAGTG\n+CTCGTGGGATTCCGATAGTTTACTTTGAGAAAAATAGAGTGTTCAAAGCAGGCGTTTTTGCCGTTGAATACATTAGCATG\n+GGATAATGGAATAGGACATTGGTTCTATTTTGTTGGTTTACGGACCGATGTAATGATTAATAGGAACAGTTGGGGACATT\n+TATATTCCATGGCTAGAGGTGAAATTCTTGGATTCATGGAAGATAAACTATTGCGAAAGCATTTGTCAAAGATGTTTTCA\n+>8e9a6185e05151042cc0beaadb77eec0;size=1\n+AGCTCCGGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCATTGCTTTTCAGCTAACCTG\n+CTCGCTAGTCGAGTTTGTGTTTGGTCTGAAGCTGCCATCCTTCCAGAGACCTTGTCATACCCTTCATTGGGCCGTGATAG\n+TGATCTGGAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATCTCGCTGTGAATACATTAGCATGGAATAAT\n+AATTTAGGACTTCTGTTCCTATTTTGTTGGTTCTAGGACTGAAGTAATGATTGATAGGGATAGTTGGGGGTGCTCGTATT\n+GAATGGCCAGAGGTGAAATTCTTGGATTCATTCAAGACGAACTTATGCGAAAGCATTCACCAAGGATGTCTTCT\n+>a23d5d75d02581e3115e23a6a2fe031b;size=1\n+AGCTCCGCCAGTGTATATCTATGCTGCTGCGGTTAAAAAGCTCGTAGTTGGATCTGCGTGCTAGAGACTGGTCCACCTAT\n+GGGTGTGCACTGGATCTCAGCACTGAATCGTTGGTTTTCTCTTTATGCCTTTAACCGGGTGTACTGAGTGACTAACATGT\n+TTACTTTGAAAAAATTAGAGTGCTTAAAACAAGCGATTTGCTTGAATATTCGTGCATGGAATAATAGAATAGGACCTTGG\n+TTCTATTTTGTTGGTTTTCGGAACACAAGGTAATGATTAAGAGGGACAGACGGGGGCATTCATATTTCGACGTTAGAGGT\n+GAAATTCTTGGATCGTCGAAAGATGCACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n+>a9a1fbfca4ade41ce328b07594f11688;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTTGAGGACAGCCGGTCCGCACT\n+ATGTGCGTGTATCTGGTTTGGCCTTGGCATCCTCTTGAGGAACGTTTCTGCGCTTAATTGCGTGGAGCGGTATTCAAGAC\n+TTTTACTTTGAGGAAATTAGAGTGTTCACGGCAGGCAAGCGCCTTGAATACATTAGCATGGAATGATAATATAGGATCTT\n+GGTTCTATTTTGTTGGTTTCTAGGGCTAAGGTAATGATTAATAGGGATAATTGGGGGCATTTGTATTAACGCGTCAGAGG\n+TGGAATTCTTGGATTGCGTTACGACAAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>b0f7bb5e2512ce1b8140fd67d40f0ca2;size=1\n+AGCTCCAGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGATATTACGCCCTAGTCTGCCGC\n+AAGTTGTGGTTTGTGCTGGTGTGCGTTTATCTTCCTTCTAGAAAGGCTTGTGGCGTCTTTGTGCGTCCACTTGTTCGATC\n+TAGATCTTTTACTTTGAATAAATTAGAGTGTTCAAAGCAGGCAATCGCTGTGAATACATTAGCATGGAATAATAATATAG\n+GACTTCGATTCTATTTTGTTGGTTTTCAGAACGAAGTAATGATTGATAGGGATAGTTGGGGGTGCTAGTATTGGCCGGCT\n+AGAGGTGAAATTCGTATTCGGCTAAGACTAACTTATGCGAAAGCATTCACCAAGGATGTCTTCT\n+>bdaad40d1a72de52eebf25010f5b300f;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n+CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n+ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n+AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n+TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n' |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/clustering_notmatched_result2.fasta --- a/test-data/clustering_notmatched_result2.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/clustering_notmatched_result2.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -1,29973 +1,8256 @@\n >b235271fbc8a6c9d990037857189ee9a;size=22254\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggtgcattccactggcctattgg\n-ttaactccaacttggctcatttggaatacgccatctttaggcagacccgtcgtggcattaggttgtcgtgatggttacgc\n-ctatcgtttactgtgaagaaattagggtgttcaaagcaggcttatgccatgaatacgttagcatggaataatgagatagg\n-atttcggtactattttgttggtttgtgtacggaaataatgattaacaggaacagtgttgtgggtattcgtatttcgttgt\n-cagaggtgaaattcttggatttacgaaagacgaacgactgcgaaagcatttaccaaggatgttttca\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGG\n+TTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGC\n+CTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAAGCAGGCTTATGCCATGAATACGTTAGCATGGAATAATGAGATAGG\n+ATTTCGGTACTATTTTGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGT\n+CAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCA\n >7e02ae2e1e404d4e7c6035a6e374d29d;size=20728\n-agctccaatagcgtatactaatgttgttgcagttaaaaagctcgtagtcggatttcagtaggctcagttaagtctcttct\n-attgagttctttatgggcctgcttctttgacagaaacttctatgttattcatttagcgtgggtagcgactgtctctttta\n-ctttgagaaaattagagtgttcaaagcaggtattcgcctgaatattactcttggaataatgctataagactttggttcta\n-atgtattggtgattgggaccagagtaatgattgatagggacggttggggtcttacgtactgcaaagcgagaggtgaaatt\n-cttggacctttgtatgacgaacaactgcgaaagcattggactaggacgttcccg\n+AGCTCCAATAGCGTATACTAATGTTGTTGCAGTTAAAAAGCTCGTAGTCGGATTTCAGTAGGCTCAGTTAAGTCTCTTCT\n+ATTGAGTTCTTTATGGGCCTGCTTCTTTGACAGAAACTTCTATGTTATTCATTTAGCGTGGGTAGCGACTGTCTCTTTTA\n+CTTTGAGAAAATTAGAGTGTTCAAAGCAGGTATTCGCCTGAATATTACTCTTGGAATAATGCTATAAGACTTTGGTTCTA\n+ATGTATTGGTGATTGGGACCAGAGTAATGATTGATAGGGACGGTTGGGGTCTTACGTACTGCAAAGCGAGAGGTGAAATT\n+CTTGGACCTTTGTATGACGAACAACTGCGAAAGCATTGGACTAGGACGTTCCCG\n >39392bbb9626a64e6663c05b70293e7c;size=11535\n-agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcggcggactgagggcggtttgcttg\n-ctagtattactgccctatagtccgtagttttgccagaggtttcggggtgctcttaatcgagtgtcccgggatgctggcag\n-gtttactttgaaaaaattagagtgctcaaagcaggctattacgcctgaatattcgtgcatggaataatagaataggaagt\n-cgtttctattttgttggttttcggaaatcgacttaatgattaatagggacagtcgggggcatttgtattcaaacgacaga\n-ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n+AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGACTGAGGGCGGTTTGCTTG\n+CTAGTATTACTGCCCTATAGTCCGTAGTTTTGCCAGAGGTTTCGGGGTGCTCTTAATCGAGTGTCCCGGGATGCTGGCAG\n+GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCATGGAATAATAGAATAGGAAGT\n+CGTTTCTATTTTGTTGGTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n+GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n >b970fcbdd71ad2a333f702c7ecfe7114;size=10907\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggcaggagcgaccggtcacacac\n-tctgtgcgtgaacttgtgttgtctctggccatccttggggagatcctgtttggcattaagttgtcgggcaggggataccc\n-atcgtttactgtgaaaaaattagagtgtttaaagcaggcttatgccgttgaatatattagcatggaataataagatagga\n-cttcggaactattttgttggtttgcgttacgaagtaatgattaatagggacagttgggggtattcgtatttcattgtcag\n-aggtgaaattcttggatttctgaaagacgaactactgcgaaagcatttaccaaggatgttttca\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGCGACCGGTCACACAC\n+TCTGTGCGTGAACTTGTGTTGTCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCC\n+ATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATGGAATAATAAGATAGGA\n+CTTCGGAACTATTTTGTTGGTTTGCGTTACGAAGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTTCATTGTCAG\n+AGGTGAAATTCTTGGATTTCTGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCA\n >a9d668eae33f9fd4484585d9fe52b05e;size=8638\n-agctccaatagcgtatactaaagttgttgcggttaaaaagctcgtagttggatcttggagtgtgagtgaatggtcgatcg\n-aaagattgtactgttcggcacactcttctcttcggttgcgtgtgtagtgcccttaactgagtgctgcactcgaccggaat\n-ttttaccttgaaaaaattagagtgttcaaagcagacctgattatgtctgaatattcgtgcatggaataataaaataagaa\n-cttggttctattttattggttttcggaactcgagttaatgattaagagggacagacgggggcatccgtactctgccgtta\n-gaggtgaaattcttggatcggcggaagacgcgcaactgcgaaagcatttgccaagaatgttttct\n+AGCTCCAATAGCGTATACTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTTGGAGTGTGAGTGAATGGTCGATCG\n+AAAGATTGTACTGTTCGGCACACTCTTCTCTTCGGTTGCGTGTGTAGTGCCCTTAACTGAGTGCTGCACTCGACCGGAAT\n+TTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGATTATGTCTGAA'..b'tagctgcacttgactgtgtggtgcggtatccaggac\n-tttttactttgaggaaattagagtgtttcaagcaggcacacgccttgaatacattagcatggaataataagataggacct\n-tggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n-gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+AGCTCCAGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGATATTACGCCCTAGTCTGCCGC\n+AAGTTGTGGTTTGTGCTGGTGTGCGTTTATCTTCCTTCTAGAAAGGCTTGTGGCGTCTTTGTGCGTCCACTTGTTCGATC\n+TAGATCTTTTACTTTGAATAAATTAGAGTGTTCAAAGCAGGCAATCGCTGTGAATACATTAGCATGGAATAATAATATAG\n+GACTTCGATTCTATTTTGTTGGTTTTCAGAACGAAGTAATGATTGATAGGGATAGTTGGGGGTGCTAGTATTGGCCGGCT\n+AGAGGTGAAATTCGTATTCGGCTAAGACTAACTTATGCGAAAGCATTCACCAAGGATGTCTTCT\n >bdaad40d1a72de52eebf25010f5b300f;size=29\n-agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggatgaccggtccgccca\n-ctgggtgagtatctggctcagccttggcatcttcctgaagaacgtatctgcacttgactgtgtggttcggtatttaggac\n-atttactttgaggaaattagagtgtttcaagcaagcgtacgccttgaatacattagcatggaataataagataggacctc\n-agtcctattttgttggtttctagagctgaggtaatgattgatagggatagttgggggcattcgtatttaactgtcagagg\n-tgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n->c5ffb5368376c81f723b6402ca2b84ba;size=29\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatctgaggattagagccccaggttggccg\n-catggctacacttgtggctcagcctgcatagtcggtgattgttttggtgctcttaattgagtgccttaactgcccggcca\n-cgtttactttgaaaaaattggagtgctcaaatcaggcccaatgcctgaacagatgtgcatggaataatggaaaaggactt\n-cggttctattttgttggttttcggaacatgaagtaatgattaagagggacagacgggggcattcgtattgcggtgggaga\n-ggtgaaattcttggatcatcgcaagacgccctacagcgaaagcatttgccaagaatgtttcca\n->c7230827efa17f5f79a837fa1d3d9e9b;size=29\n-agctccaatagcgtatattaaagttgttgcggttaaaaaagctcgtagttggatttctgccgaggacgaccggtccgccc\n-tctgggtgagtatctggcttggcctgggcatcttcttggagaacgttactgcacttgactgtgtggtgcggtatccagga\n-cttttactttgaggaaattagagtgtttcaagcaggcatacgccttgaatacattagcatggaataataagataggacct\n-cggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n-gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n+CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n+ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n+AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n+TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n >c72b7875fe56dca4f7d9c24360650a25;size=29\n-agctctaatagcgtatattaatgttgttgcggttaaaaagctcgtggttgaaagtgaagggtaaaactggatctggggaa\n-acccatttgcagttattagcgcgttttaaggtattcggtttacttgacttaattgtcaaataagcttaacggatgccttg\n-tagctactctgataaaatcagagtgcttaaaacaagcctttaagcttgtatatttgtgcatagtatagcaaaatatgacc\n-taagctaataaagatggtgattagccgtggtaatgattaaaagggattgtcggaggcatttgtatttgaaagtgagaggt\n-gaaattctatgatctttcaaagacaaactagcgcgaaagcatttgccaagtatgttttca\n+AGCTCTAATAGCGTATATTAATGTTGTTGCGGTTAAAAAGCTCGTGGTTGAAAGTGAAGGGTAAAACTGGATCTGGGGAA\n+ACCCATTTGCAGTTATTAGCGCGTTTTAAGGTATTCGGTTTACTTGACTTAATTGTCAAATAAGCTTAACGGATGCCTTG\n+TAGCTACTCTGATAAAATCAGAGTGCTTAAAACAAGCCTTTAAGCTTGTATATTTGTGCATAGTATAGCAAAATATGACC\n+TAAGCTAATAAAGATGGTGATTAGCCGTGGTAATGATTAAAAGGGATTGTCGGAGGCATTTGTATTTGAAAGTGAGAGGT\n+GAAATTCTATGATCTTTCAAAGACAAACTAGCGCGAAAGCATTTGCCAAGTATGTTTTCA\n >c8403bc529537d14794709f99640ac8f;size=29\n-agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n-gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n-cgtttacttgaaaaaattgagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggactttgg\n-tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n-aaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n+GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n+CGTTTACTTGAAAAAATTGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTTGG\n+TCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTG\n+AAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n' |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/clustering_uc_result3.uc --- a/test-data/clustering_uc_result3.uc Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/clustering_uc_result3.uc Fri Sep 07 11:31:31 2018 -0400 |
| b |
| b'@@ -13,9972 +13,6362 @@\n S\t12\t382\t*\t*\t*\t*\t*\tde935b7625d937ebe744b3125cfd1dfc;size=3868\t*\n S\t13\t376\t*\t*\t*\t*\t*\t7e3fa204e95db351839d719215fba508;size=3689\t*\n S\t14\t381\t*\t*\t*\t*\t*\t78951b2d4ca30531381672a30be0978a;size=3655\t*\n-S\t15\t388\t*\t*\t*\t*\t*\tb7ffa8f46cb16542d89dc5293ade2098;size=3629\t*\n-S\t16\t382\t*\t*\t*\t*\t*\t721460e46e8804111d74cb730340492f;size=3538\t*\n+H\t0\t388\t99.7\t+\t0\t0\t319MD68M\tb7ffa8f46cb16542d89dc5293ade2098;size=3629\tb235271fbc8a6c9d990037857189ee9a;size=22254\n+S\t15\t382\t*\t*\t*\t*\t*\t721460e46e8804111d74cb730340492f;size=3538\t*\n 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|
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/dereplication_result2.fasta --- a/test-data/dereplication_result2.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/dereplication_result2.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -1,3 +1,3 @@ ->97485665bcded44c4d86c131ca714848;size=4; +>97485665bcded44c4d86c131ca714848;size=4 gtcgctcctaccgattgaatacgttggtgattgaattggataaagagatatcatcttaaatgatagcaaagcggtaaaca tttgtaaactagattatttagaggaaggagaagtcgtaacaaggtttcc |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/dereplication_uc_result3.fasta --- a/test-data/dereplication_uc_result3.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/dereplication_uc_result3.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -1,5 +1,5 @@ S 0 129 * * * * * 97485665bcded44c4d86c131ca714848 * -H 0 129 100.0 * 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 -H 0 129 100.0 * 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 -H 0 129 100.0 * 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 +H 0 129 100.0 + 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 +H 0 129 100.0 + 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 +H 0 129 100.0 + 0 0 * 97485665bcded44c4d86c131ca714848 97485665bcded44c4d86c131ca714848 C 0 4 * * * * * 97485665bcded44c4d86c131ca714848 * |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/search_fastapairs_result2.fasta --- a/test-data/search_fastapairs_result2.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/search_fastapairs_result2.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -1,5 +1,41 @@ >ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. -GAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACTCTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCATTGGCAGATTACATCAGGCAACAAAAAAGTGACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAGCAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATTTGGGGATGTTTCAAAACCGGAAAGATATAGTGGCGACAACATAATCTACAAACCACCAGGGCATTCTGCTCCGGATATGGTGTACTTGGGAGCTATGACAAATTTTGATGTGACTTACAATTGGATTCAAGATAAATGTGTTCCTCTTGTCCGAGAAATAACATTTGAAAATGGAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAGTTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGGTACAATAAACTTTTTACATGCCGATTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAAACTGCACAGAGAATTCCATCATGGACCTGACCCAACTGATACAGCCCCAGGAGAGCAAGCCCAAGATGTAGCAAGCAGTCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAGCTTTAAAAACTTGAAAAACAGTTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCTATATTTTCATAATTCTATGTgtatttttattttgaataaacagaaagaaattttgggtttttaatttttttCTCC +GAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCA +ACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCC +TTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGA +TACAGAGAATATAGATGAAATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTC +AGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCC +AGAGTTGATTGTGATCAGCACTCTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAA +TGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCATTGGCAGATTACATCAGGCAACAAAAAAGTG +ACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAG +CAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATT +TGGGGATGTTTCAAAACCGGAAAGATATAGTGGCGACAACATAATCTACAAACCACCAGGGCATTCTGCTCCGGATATGG +TGTACTTGGGAGCTATGACAAATTTTGATGTGACTTACAATTGGATTCAAGATAAATGTGTTCCTCTTGTCCGAGAAATA +ACATTTGAAAATGGAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAG +TTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGGTACAATAAACTTTTTACATGCCGATTGTG +ACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCAT +ATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAA +ACTGCACAGAGAATTCCATCATGGACCTGACCCAACTGATACAGCCCCAGGAGAGCAAGCCCAAGATGTAGCAAGCAGTC +CACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAGCTTTAAAAA +CTTGAAAAACAGTTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCTATATTTTCATAATTC +TATGTgtatttttattttgaataaacagaaagaaattttgggtttttaatttttttCTCC >ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. -GAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACTCTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCATTGGCAGATTACATCAGGCAACAAAAAAGTGACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAGCAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATTTGGGGATGTTTCAAAACCGGAAAGATATAGTGGCGACAACATAATCTACAAACCACCAGGGCATTCTGCTCCGGATATGGTGTACTTGGGAGCTATGACAAATTTTGATGTGACTTACAATTGGATTCAAGATAAATGTGTTCCTCTTGTCCGAGAAATAACATTTGAAAATGGAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAGTTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGGTACAATAAACTTTTTACATGCCGATTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAAACTGCACAGAGAATTCCATCATGGACCTGACCCAACTGATACAGCCCCAGGAGAGCAAGCCCAAGATGTAGCAAGCAGTCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAGCTTTAAAAACTTGAAAAACAGTTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCTATATTTTCATAATTCTATGTGTATTTTTATTTTGAATAAACAGAAAGAAATTTTGGGTTTTTAATTTTTTTCTCC +GAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCA +ACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCC +TTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGA +TACAGAGAATATAGATGAAATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTC +AGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCC +AGAGTTGATTGTGATCAGCACTCTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAA +TGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCATTGGCAGATTACATCAGGCAACAAAAAAGTG +ACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAG +CAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATT +TGGGGATGTTTCAAAACCGGAAAGATATAGTGGCGACAACATAATCTACAAACCACCAGGGCATTCTGCTCCGGATATGG +TGTACTTGGGAGCTATGACAAATTTTGATGTGACTTACAATTGGATTCAAGATAAATGTGTTCCTCTTGTCCGAGAAATA +ACATTTGAAAATGGAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAG +TTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGGTACAATAAACTTTTTACATGCCGATTGTG +ACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCAT +ATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAA +ACTGCACAGAGAATTCCATCATGGACCTGACCCAACTGATACAGCCCCAGGAGAGCAAGCCCAAGATGTAGCAAGCAGTC +CACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAGCTTTAAAAA +CTTGAAAAACAGTTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCTATATTTTCATAATTC +TATGTGTATTTTTATTTTGAATAAACAGAAAGAAATTTTGGGTTTTTAATTTTTTTCTCC |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 test-data/sorting_result4.fasta --- a/test-data/sorting_result4.fasta Fri Jan 20 03:39:22 2017 -0500 +++ b/test-data/sorting_result4.fasta Fri Sep 07 11:31:31 2018 -0400 |
| b |
| @@ -1,48 +1,48 @@ ->sp|Q66125|2B_CMVQ Suppressor of silencing 2b OS=Cucumber mosaic virus (strain Q) GN=ORF2b PE=1 SV=1;size=1; +>sp|Q66125|2B_CMVQ Suppressor of silencing 2b OS=Cucumber mosaic virus (strain Q) GN=ORF2b PE=1 SV=1;size=1 MDVTVVVSTADHANVKRRRRRSHVRNRRARGYKSSRARSARMHGVDVDWDVVRSSVTSVSYSDDTDWAGNWAGS ->sp|P0DMP9|APOC3_PANTA Apolipoprotein C-III OS=Panthera tigris altaica GN=APOC3 PE=3 SV=1;size=1; +>sp|P0DMP9|APOC3_PANTA Apolipoprotein C-III OS=Panthera tigris altaica GN=APOC3 PE=3 SV=1;size=1 MSRVVTAVASARATGDSGMGYVHATKTADTTTMRVAARDWVTGRSSKDYWSTTGKSGWDSTAVTTASAK ->sp|Q89681|DR4_HHV6U Uncharacterized protein DR4 OS=Human herpesvirus 6A (strain Uganda-1102) GN=DR4L PE=4 SV=1;size=1; +>sp|Q89681|DR4_HHV6U Uncharacterized protein DR4 OS=Human herpesvirus 6A (strain Uganda-1102) GN=DR4L PE=4 SV=1;size=1 MRGTRRGSGGWSGARYAGSVAASDRSDTRATTSAYRHTHAASGARTRAHARHARHRVTVHVVAGVCARV ->sp|Q91G65|032R_IIV6 Uncharacterized protein 032R OS=Invertebrate iridescent virus 6 GN=IIV6-032R PE=4 SV=1;size=1; +>sp|Q91G65|032R_IIV6 Uncharacterized protein 032R OS=Invertebrate iridescent virus 6 GN=IIV6-032R PE=4 SV=1;size=1 MGVYKCYNKKKVGVAVKRYVTKKSYKTANSNADSYNCRKCCKAKGCCDRYWKTVKNDKCKKGVVVYY ->sp|B3MQ24|ENY2_DROAN Enhancer of yellow 2 transcription factor OS=Drosophila ananassae GN=e(y)2 PE=3 SV=1;size=1; +>sp|B3MQ24|ENY2_DROAN Enhancer of yellow 2 transcription factor OS=Drosophila ananassae GN=e(y)2 PE=3 SV=1;size=1 MTVSNTVDYTVSGDRSKKDCNRTCGWRDVRCRTKGTGNSTVTVTKARTVDAVKKMKRTTNSDA ->sp|P20194|A100_SSV1 Uncharacterized protein A-100 OS=Sulfolobus spindle-shape virus 1 GN=a100 PE=1 SV=1;size=1; +>sp|P20194|A100_SSV1 Uncharacterized protein A-100 OS=Sulfolobus spindle-shape virus 1 GN=a100 PE=1 SV=1;size=1 MVSTRKKNSVYTGRKYGSYHKDDKKYADNKNRKRYVYSVDDAKAKATAKSVD ->tr|M0KT65|M0KT65_9EURY 50S ribosomal protein L37e OS=Haloarcula amylolytica JCM 13557 GN=rpl37e PE=3 SV=1;size=1; +>tr|M0KT65|M0KT65_9EURY 50S ribosomal protein L37e OS=Haloarcula amylolytica JCM 13557 GN=rpl37e PE=3 SV=1;size=1 MTGAGTSGKKNTTTHTKCRRCGKSYHTKKKVCSSCGGKSAKRRDYWSKAG ->tr|M0MK44|M0MK44_9EURY 50S ribosomal protein L37e OS=Halococcus saccharolyticus DSM 5350 GN=rpl37e PE=3 SV=1;size=1; +>tr|M0MK44|M0MK44_9EURY 50S ribosomal protein L37e OS=Halococcus saccharolyticus DSM 5350 GN=rpl37e PE=3 SV=1;size=1 MTGSGTSGKKNKTVHVKCRRCGASYHKTKKVCASCGGKSAKRRDYAWKAG ->tr|M0D8K9|M0D8K9_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum terrestre JCM 10247 GN=rps14P PE=3 SV=1;size=1; +>tr|M0D8K9|M0D8K9_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum terrestre JCM 10247 GN=rps14P PE=3 SV=1;size=1 MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0F5C2|M0F5C2_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum hochstenium ATCC 700873 GN=rps14P PE=3 SV=1;size=1; +>tr|M0F5C2|M0F5C2_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum hochstenium ATCC 700873 GN=rps14P PE=3 SV=1;size=1 MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0NIQ6|M0NIQ6_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum lipolyticum DSM 21995 GN=rps14P PE=3 SV=1;size=1; +>tr|M0NIQ6|M0NIQ6_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum lipolyticum DSM 21995 GN=rps14P PE=3 SV=1;size=1 MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0PIT7|M0PIT7_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum arcis JCM 13916 GN=rps14P PE=3 SV=1;size=1; +>tr|M0PIT7|M0PIT7_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum arcis JCM 13916 GN=rps14P PE=3 SV=1;size=1 MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0MEH5|M0MEH5_9EURY 30S ribosomal protein S14 type Z OS=Halococcus saccharolyticus DSM 5350 GN=rps14P PE=3 SV=1;size=1; +>tr|M0MEH5|M0MEH5_9EURY 30S ribosomal protein S14 type Z OS=Halococcus saccharolyticus DSM 5350 GN=rps14P PE=3 SV=1;size=1 MSSTDTGHATKRTGDCRCGRKGVGKYDWCRCRARGMGRKYK ->tr|L9WHT8|L9WHT8_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum bangense JCM 10635 GN=rplX PE=3 SV=1;size=1; +>tr|L9WHT8|L9WHT8_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum bangense JCM 10635 GN=rplX PE=3 SV=1;size=1 MSTVTGKSRDGYSTTDANNVARHVYSGSHGKRSDVSA ->tr|M0KH83|M0KH83_9EURY 50S ribosomal protein L18Ae OS=Haloarcula amylolytica JCM 13557 GN=rplX PE=3 SV=1;size=1; +>tr|M0KH83|M0KH83_9EURY 50S ribosomal protein L18Ae OS=Haloarcula amylolytica JCM 13557 GN=rplX PE=3 SV=1;size=1 MSTYTVRGSARDGKVDANNVARVYSDGSHNKRTTVAA ->tr|L9WBT3|L9WBT3_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum sulfidifaciens JCM 14089 GN=rplX PE=3 SV=1;size=1; +>tr|L9WBT3|L9WBT3_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum sulfidifaciens JCM 14089 GN=rplX PE=3 SV=1;size=1 MSTVTGKSRDGYATTDANNVARHVSGSHGKRTDVS ->tr|W9PMP6|W9PMP6_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. pisi HDV247 GN=FOVG_07074 PE=4 SV=1;size=1; +>tr|W9PMP6|W9PMP6_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. pisi HDV247 GN=FOVG_07074 PE=4 SV=1;size=1 MTNAGRSKACDCKRKVGCSRYK ->tr|X0LYM3|X0LYM3_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. vasinfectum 25433 GN=FOTG_17987 PE=4 SV=1;size=1; +>tr|X0LYM3|X0LYM3_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. vasinfectum 25433 GN=FOTG_17987 PE=4 SV=1;size=1 MTNAGRSKACDCKRKVGCSRYK ->tr|H3BPV3|H3BPV3_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=4 SV=1;size=1; +>tr|H3BPV3|H3BPV3_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=4 SV=1;size=1 MATDSWAAVDAAASRTSYSTS ->tr|H0ACG9|H0ACG9_HALSG Uncharacterized protein OS=Haloredivivus sp. (strain G17) GN=HRED_08116 PE=4 SV=1;size=1; +>tr|H0ACG9|H0ACG9_HALSG Uncharacterized protein OS=Haloredivivus sp. (strain G17) GN=HRED_08116 PE=4 SV=1;size=1 MRVRVDRVGVVGGGTKKRGV ->tr|N6VV02|N6VV02_9EURY Uncharacterized protein (Fragment) OS=Thermoplasmatales archaeon SCGC AB-539-C06 GN=MBGDC06_00209 PE=4 SV=1;size=1; +>tr|N6VV02|N6VV02_9EURY Uncharacterized protein (Fragment) OS=Thermoplasmatales archaeon SCGC AB-539-C06 GN=MBGDC06_00209 PE=4 SV=1;size=1 KRGAHGKMNGSVKTTMGSGR ->tr|Q53RS6|Q53RS6_HUMAN Putative uncharacterized protein ALS2CR3 (Fragment) OS=Homo sapiens GN=ALS2CR3 PE=4 SV=1;size=1; +>tr|Q53RS6|Q53RS6_HUMAN Putative uncharacterized protein ALS2CR3 (Fragment) OS=Homo sapiens GN=ALS2CR3 PE=4 SV=1;size=1 MSSNATSTGNMNSNHRDSST ->tr|V9H0X7|V9H0X7_NEUCS Neurospora crassa DNA for RNA polymerase I second-largest subunit OS=Neurospora crassa PE=4 SV=1;size=1; +>tr|V9H0X7|V9H0X7_NEUCS Neurospora crassa DNA for RNA polymerase I second-largest subunit OS=Neurospora crassa PE=4 SV=1;size=1 MAHSDNRDTADYGGAHAA ->tr|Q9BZF8|Q9BZF8_HUMAN NF-E2-related factor 2 (Fragment) OS=Homo sapiens PE=2 SV=1;size=1; +>tr|Q9BZF8|Q9BZF8_HUMAN NF-E2-related factor 2 (Fragment) OS=Homo sapiens PE=2 SV=1;size=1 MMDGSDMDDWRDD |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 tool_dependencies.xml --- a/tool_dependencies.xml Fri Jan 20 03:39:22 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="vsearch" version="1.9.7"> - <repository changeset_revision="99c947b9fb31" name="package_vsearch_1_9_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency> |
| b |
| diff -r 576963db5f1b -r b3c7199d8786 vsearch_macros.xml --- a/vsearch_macros.xml Fri Jan 20 03:39:22 2017 -0500 +++ b/vsearch_macros.xml Fri Sep 07 11:31:31 2018 -0400 |
| [ |
| @@ -4,7 +4,7 @@ <requirement type="package" version="@VERSION@">vsearch</requirement> </requirements> </xml> - <token name="@VERSION@">1.9.7</token> + <token name="@VERSION@">2.8.3</token> <xml name="version_command"> <version_command>vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'</version_command> @@ -40,7 +40,7 @@ </xml> <xml name="hardmask"> - <param name="hardmask" type="boolean" truevalue="--hardmask" falsevalue="" checked="False" + <param name="hardmask" type="boolean" truevalue="--hardmask" falsevalue="" checked="False" label="Mask by replacing with N instead of lower case" help="(--hardmask)"/> </xml> @@ -57,9 +57,9 @@ </xml> <xml name="self_and_selfid"> - <param name="self_param" type="boolean" truevalue="--self" falsevalue="" checked="False" + <param name="self_param" type="boolean" truevalue="--self" falsevalue="" checked="False" label="Exclude identical labels for --uchime_ref" help="(--self)"/> - <param name="selfid_param" type="boolean" truevalue="--selfid" falsevalue="" checked="False" + <param name="selfid_param" type="boolean" truevalue="--selfid" falsevalue="" checked="False" label="Exclude identical sequences for --uchime_ref" help="(--selfid)"/> </xml> @@ -71,17 +71,17 @@ </xml> <xml name="sizein"> - <param name="sizein" type="boolean" truevalue="--sizein" falsevalue="" checked="False" + <param name="sizein" type="boolean" truevalue="--sizein" falsevalue="" checked="False" label="Read abundance annotation from input" help="(--sizein)"/> </xml> <xml name="sizeout"> - <param name="sizeout" type="boolean" truevalue="--sizeout" falsevalue="" checked="False" + <param name="sizeout" type="boolean" truevalue="--sizeout" falsevalue="" checked="False" label="Write cluster abundances to centroid file" help="(--sizeout)"/> </xml> <xml name="uclust_like_output"> - <param name="uc" type="boolean" truevalue="--uc" falsevalue="" checked="False" + <param name="uc" type="boolean" truevalue="--uc" falsevalue="" checked="False" label="UCLUST-like output" help="(--uc)"/> </xml> @@ -170,7 +170,7 @@ <token name="@EXTERNAL_DOCUMENTATION@"> <![CDATA[ -For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch_manual.pdf>`_. +For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v2.8.3/vsearch_manual.pdf>`_. ]]> </token> |