Repository 'meme_fimo'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo

Changeset 7:b3f7ff168b9a (2016-07-07)
Previous changeset 6:cdcc4bb60bc3 (2016-06-29) Next changeset 8:53846f74a019 (2016-07-10)
Commit message:
Uploaded
modified:
fimo.xml
b
diff -r cdcc4bb60bc3 -r b3f7ff168b9a fimo.xml
--- a/fimo.xml Wed Jun 29 08:35:04 2016 -0400
+++ b/fimo.xml Thu Jul 07 09:55:00 2016 -0400
[
@@ -1,4 +1,4 @@
-<tool id="meme_fimo" name="FIMO" version="4.11.0.3">
+<tool id="meme_fimo" name="FIMO" version="4.11.0.4">
     <description>- Scan a set of sequences for motifs.</description>
     <requirements>
         <requirement type="package" version="6.9.3">imagemagick</requirement>
@@ -181,7 +181,7 @@
             </actions>
         </data>
         <data format="tabular" name="gff_outfile" label="${tool.name} on ${on_string} (almost-gff)">
-            <filter>options_type['output_separate_motifs'] == 'no'</filter>
+            <filter>options_type['options_type_selector'] == 'basic' or (options_type['options_type_selector'] == 'advanced' and options_type['output_separate_motifs'] == 'no')</filter>
             <actions>
                 <conditional name="fasta_type.fasta_type_selector">
                     <when value="cached">
@@ -196,7 +196,7 @@
         </data>
         <collection name="motifs" type="list" label="Motifs: ${tool.name} on ${on_string}">
             <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="output" ext="gff" visible="false" />
-            <filter>options_type['output_separate_motifs'] == 'yes'</filter>
+            <filter>options_type['options_type_selector'] == 'advanced' and options_type['output_separate_motifs'] == 'yes'</filter>
         </collection>
         <data format="cisml" name="xml_outfile" label="${tool.name} on ${on_string} (xml)">
             <actions>