| Previous changeset 13:eb51efc01e35 (2016-04-25) Next changeset 15:0c0abdfad3b7 (2016-04-25) |
|
Commit message:
Uploaded |
|
modified:
CRAPomeQuery.py |
| b |
| diff -r eb51efc01e35 -r b451afff1aad CRAPomeQuery.py --- a/CRAPomeQuery.py Mon Apr 25 11:30:53 2016 -0400 +++ b/CRAPomeQuery.py Mon Apr 25 11:40:37 2016 -0400 |
| [ |
| @@ -123,7 +123,7 @@ filt.append(j) flag +=1 if flag == 0: # if protein is not present in CRAPome database then add it - filt.append(["\t", "\t", i[0], "Invalid identifier / gene not available","\t","\t","\t"]) + filt.append(["\t", "\t", i[0], "Invalid identifier / gene not available"]) total = 0 # Experiment counter query = [] for i in filt: # Create CRAPome file as list @@ -135,7 +135,6 @@ ave = [] total = len(i[3:]) # calculate total experiments for j in i[3:]: - print j if j != '0': ave.append(int(j)) # calculate Ave.SC on only experiments with ID cnt+=1 @@ -149,6 +148,9 @@ else: temp.append(i[2]) # append accession temp.append(i[3]) + temp.append("\t") + temp.append("\t") + temp.append("\t") query.append(temp) # final query results header = ["User Input","Mapped Gene Symbol","Num of Expt. (found/total)","Ave SC","Max SC"] |