Previous changeset 4:38eedf3cc3c9 (2019-01-28) Next changeset 6:ecc913a7334b (2019-03-08) |
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit b8cb10b5fe2aa448e3621828829194567d5ae50d |
modified:
annotateMyIDs.xml test-data/out_gokegg.tab test-data/out_gokegg_dupsrem.tab |
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diff -r 38eedf3cc3c9 -r b467a89be0c6 annotateMyIDs.xml --- a/annotateMyIDs.xml Mon Jan 28 18:17:05 2019 -0500 +++ b/annotateMyIDs.xml Sat Feb 09 09:13:29 2019 -0500 |
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@@ -1,10 +1,10 @@ -<tool id="annotatemyids" name="annotateMyIDs" version="3.6.0"> +<tool id="annotatemyids" name="annotateMyIDs" version="3.7.0"> <description>annotate a generic set of identifiers</description> <requirements> - <requirement type="package" version="3.6.0">bioconductor-org.hs.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.mm.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.dr.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.hs.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.mm.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.dm.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.dr.eg.db</requirement> </requirements> <version_command><![CDATA[ echo $(R --version | grep version | grep -v GNU)", org.Hs.eg.db version" $(R --vanilla --slave -e "library(org.Hs.eg.db); cat(sessionInfo()\$otherPkgs\$org.Hs.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dr.eg.db version" $(R --vanilla --slave -e "library(org.Dr.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dr.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dm.eg.db version" $(R --vanilla --slave -e "library(org.Dm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Mm.eg.db version" $(R --vanilla --slave -e "library(org.Mm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Mm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ") |
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diff -r 38eedf3cc3c9 -r b467a89be0c6 test-data/out_gokegg.tab --- a/test-data/out_gokegg.tab Mon Jan 28 18:17:05 2019 -0500 +++ b/test-data/out_gokegg.tab Sat Feb 09 09:13:29 2019 -0500 |
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b'@@ -2,9 +2,9 @@\n ENSG00000091831\tGO:0000122\tBP\tIMP\n ENSG00000091831\tGO:0000790\tCC\tIDA\n ENSG00000091831\tGO:0000978\tMF\tIDA\n+ENSG00000091831\tGO:0000981\tMF\tISA\n ENSG00000091831\tGO:0000981\tMF\tISM\n ENSG00000091831\tGO:0000981\tMF\tNAS\n-ENSG00000091831\tGO:0001046\tMF\tIDA\n ENSG00000091831\tGO:0001077\tMF\tIDA\n ENSG00000091831\tGO:0001093\tMF\tIPI\n ENSG00000091831\tGO:0001223\tMF\tIPI\n@@ -91,6 +91,7 @@\n ENSG00000091831\tGO:0097550\tCC\tIDA\n ENSG00000091831\tGO:1903799\tBP\tIMP\n ENSG00000082175\tGO:0000978\tMF\tIDA\n+ENSG00000082175\tGO:0000981\tMF\tISA\n ENSG00000082175\tGO:0000981\tMF\tISM\n ENSG00000082175\tGO:0000981\tMF\tNAS\n ENSG00000082175\tGO:0001077\tMF\tIDA\n@@ -121,15 +122,11 @@\n ENSG00000141736\tGO:0000165\tBP\tTAS\n ENSG00000141736\tGO:0001042\tMF\tIDA\n ENSG00000141736\tGO:0001934\tBP\tISS\n-ENSG00000141736\tGO:0004709\tMF\tIBA\n-ENSG00000141736\tGO:0004713\tMF\tIBA\n ENSG00000141736\tGO:0004713\tMF\tIDA\n ENSG00000141736\tGO:0004713\tMF\tIGI\n ENSG00000141736\tGO:0004713\tMF\tTAS\n ENSG00000141736\tGO:0004714\tMF\tIBA\n ENSG00000141736\tGO:0004714\tMF\tIDA\n-ENSG00000141736\tGO:0004716\tMF\tIEA\n-ENSG00000141736\tGO:0004871\tMF\tIBA\n ENSG00000141736\tGO:0004888\tMF\tIBA\n ENSG00000141736\tGO:0004888\tMF\tIDA\n ENSG00000141736\tGO:0005088\tMF\tTAS\n@@ -142,7 +139,6 @@\n ENSG00000141736\tGO:0005886\tCC\tNAS\n ENSG00000141736\tGO:0005886\tCC\tTAS\n ENSG00000141736\tGO:0005887\tCC\tIBA\n-ENSG00000141736\tGO:0006351\tBP\tIEA\n ENSG00000141736\tGO:0006357\tBP\tTAS\n ENSG00000141736\tGO:0006468\tBP\tTAS\n ENSG00000141736\tGO:0007165\tBP\tIDA\n@@ -150,7 +146,6 @@\n ENSG00000141736\tGO:0007167\tBP\tTAS\n ENSG00000141736\tGO:0007169\tBP\tIDA\n ENSG00000141736\tGO:0007169\tBP\tTAS\n-ENSG00000141736\tGO:0007275\tBP\tIBA\n ENSG00000141736\tGO:0007422\tBP\tIEA\n ENSG00000141736\tGO:0007507\tBP\tIEA\n ENSG00000141736\tGO:0007528\tBP\tIEA\n@@ -169,10 +164,8 @@\n ENSG00000141736\tGO:0019903\tMF\tIPI\n ENSG00000141736\tGO:0030154\tBP\tIBA\n ENSG00000141736\tGO:0030307\tBP\tIMP\n-ENSG00000141736\tGO:0031434\tMF\tIBA\n ENSG00000141736\tGO:0032886\tBP\tIDA\n ENSG00000141736\tGO:0033088\tBP\tIEA\n-ENSG00000141736\tGO:0033674\tBP\tIBA\n ENSG00000141736\tGO:0038128\tBP\tTAS\n ENSG00000141736\tGO:0042060\tBP\tIDA\n ENSG00000141736\tGO:0042552\tBP\tIEA\n@@ -184,7 +177,6 @@\n ENSG00000141736\tGO:0043235\tCC\tIDA\n ENSG00000141736\tGO:0043235\tCC\tTAS\n ENSG00000141736\tGO:0043406\tBP\tIDA\n-ENSG00000141736\tGO:0043410\tBP\tIBA\n ENSG00000141736\tGO:0043547\tBP\tISS\n ENSG00000141736\tGO:0045727\tBP\tIMP\n ENSG00000141736\tGO:0045765\tBP\tNAS\n@@ -212,12 +204,10 @@\n ENSG00000012048\tGO:0000724\tBP\tIBA\n ENSG00000012048\tGO:0000724\tBP\tIDA\n ENSG00000012048\tGO:0000729\tBP\tTAS\n-ENSG00000012048\tGO:0000731\tBP\tTAS\n-ENSG00000012048\tGO:0000732\tBP\tTAS\n ENSG00000012048\tGO:0000800\tCC\tIDA\n-ENSG00000012048\tGO:0001105\tMF\tIMP\n ENSG00000012048\tGO:0003677\tMF\tTAS\n ENSG00000012048\tGO:0003684\tMF\tIEA\n+ENSG00000012048\tGO:0003713\tMF\tIMP\n ENSG00000012048\tGO:0003713\tMF\tNAS\n ENSG00000012048\tGO:0003723\tMF\tIDA\n ENSG00000012048\tGO:0004842\tMF\tIBA\n@@ -237,7 +227,6 @@\n ENSG00000012048\tGO:0006349\tBP\tIEA\n ENSG00000012048\tGO:0006357\tBP\tIMP\n ENSG00000012048\tGO:0006359\tBP\tTAS\n-ENSG00000012048\tGO:0006366\tBP\tIEA\n ENSG00000012048\tGO:0006633\tBP\tIEA\n ENSG00000012048\tGO:0006915\tBP\tTAS\n ENSG00000012048\tGO:0006974\tBP\tTAS\n@@ -266,6 +255,7 @@\n ENSG00000012048\tGO:0035066\tBP\tIDA\n ENSG00000012048\tGO:0035067\tBP\tIBA\n ENSG00000012048\tGO:0042127\tBP\tTAS\n+ENSG00000012048\tGO:0042802\tMF\tIPI\n ENSG00000012048\tGO:0042981\tBP\tTAS\n ENSG00000012048\tGO:0043009\tBP\tIBA\n ENSG00000012048\tGO:0043627\tBP\tIDA\n@@ -301,72 +291,52 @@\n ENSG00000012048\tGO:0071681\tBP\tIDA\n ENSG00000012048\tGO:0072425\tBP\tIMP\n ENSG00000012048\tGO:0085020\tBP\tIDA\n-ENSG00000012048\tGO:1901796\tBP\tTAS\n ENSG00000012048\tGO:1902042\tBP\tIMP\n+ENSG00000012048\tGO:1990904\tCC\tIDA\n ENSG00000012048\tGO:2000378\tBP\tIMP\n ENSG00000012048\tGO:2000617\tBP\tIDA\n ENSG00000012048\tGO:2000620\tBP\tIDA\n ENSG00000139618\tGO:0000281\tBP\tIDA\n-ENSG00000139618\tGO:0000722\tBP\tIEA\n ENSG00000139618\tGO:0000724\tBP\tIBA\n ENSG00000139618\tGO:0000724\tBP\tIDA\n ENSG00000139618\tGO:0000724\tBP\tIMP\n-ENSG00000139618\tGO:0000731\tBP\tTAS\n-ENSG00000139618\tGO:0000732\tBP\tTAS\n ENSG00000139618\tGO:0000784\tCC\tIDA\n ENSG00000139618\tGO:0000800\tCC\tID'..b'O:0001094\tMF\tIPI\n-ENSG00000141510\tGO:0001221\tMF\tIEA\n ENSG00000141510\tGO:0001228\tMF\tIDA\n ENSG00000141510\tGO:0002020\tMF\tIPI\n ENSG00000141510\tGO:0002039\tMF\tIPI\n-ENSG00000141510\tGO:0002687\tBP\tIEA\n ENSG00000141510\tGO:0003677\tMF\tIDA\n ENSG00000141510\tGO:0003677\tMF\tIMP\n ENSG00000141510\tGO:0003682\tMF\tIDA\n-ENSG00000141510\tGO:0003684\tMF\tIBA\n ENSG00000141510\tGO:0003700\tMF\tIDA\n ENSG00000141510\tGO:0003700\tMF\tIMP\n ENSG00000141510\tGO:0003730\tMF\tIDA\n@@ -599,7 +564,6 @@\n ENSG00000141510\tGO:0005634\tCC\tIMP\n ENSG00000141510\tGO:0005654\tCC\tIDA\n ENSG00000141510\tGO:0005654\tCC\tTAS\n-ENSG00000141510\tGO:0005657\tCC\tIBA\n ENSG00000141510\tGO:0005669\tCC\tIDA\n ENSG00000141510\tGO:0005730\tCC\tIDA\n ENSG00000141510\tGO:0005737\tCC\tIDA\n@@ -615,6 +579,7 @@\n ENSG00000141510\tGO:0006355\tBP\tIMP\n ENSG00000141510\tGO:0006914\tBP\tIMP\n ENSG00000141510\tGO:0006974\tBP\tIDA\n+ENSG00000141510\tGO:0006974\tBP\tIMP\n ENSG00000141510\tGO:0006977\tBP\tIMP\n ENSG00000141510\tGO:0006977\tBP\tTAS\n ENSG00000141510\tGO:0006978\tBP\tIDA\n@@ -625,7 +590,6 @@\n ENSG00000141510\tGO:0007265\tBP\tIEP\n ENSG00000141510\tGO:0007275\tBP\tIMP\n ENSG00000141510\tGO:0007569\tBP\tIMP\n-ENSG00000141510\tGO:0008022\tMF\tIEA\n ENSG00000141510\tGO:0008104\tBP\tIDA\n ENSG00000141510\tGO:0008134\tMF\tIPI\n ENSG00000141510\tGO:0008270\tMF\tTAS\n@@ -635,9 +599,6 @@\n ENSG00000141510\tGO:0008285\tBP\tISS\n ENSG00000141510\tGO:0008340\tBP\tISS\n ENSG00000141510\tGO:0009299\tBP\tIMP\n-ENSG00000141510\tGO:0010038\tBP\tIEA\n-ENSG00000141510\tGO:0010165\tBP\tIBA\n-ENSG00000141510\tGO:0010224\tBP\tIEA\n ENSG00000141510\tGO:0010332\tBP\tIMP\n ENSG00000141510\tGO:0010628\tBP\tIDA\n ENSG00000141510\tGO:0010628\tBP\tIMP\n@@ -656,22 +617,15 @@\n ENSG00000141510\tGO:0030330\tBP\tIDA\n ENSG00000141510\tGO:0030330\tBP\tIMP\n ENSG00000141510\tGO:0030971\tMF\tIPI\n-ENSG00000141510\tGO:0031000\tBP\tIEA\n-ENSG00000141510\tGO:0031065\tBP\tIBA\n ENSG00000141510\tGO:0031497\tBP\tIDA\n ENSG00000141510\tGO:0031571\tBP\tIMP\n ENSG00000141510\tGO:0031625\tMF\tIPI\n ENSG00000141510\tGO:0032461\tBP\tIDA\n-ENSG00000141510\tGO:0032526\tBP\tIEA\n ENSG00000141510\tGO:0032991\tCC\tIDA\n ENSG00000141510\tGO:0032991\tCC\tIMP\n-ENSG00000141510\tGO:0033552\tBP\tIEA\n-ENSG00000141510\tGO:0034605\tBP\tIEA\n-ENSG00000141510\tGO:0034614\tBP\tIEA\n ENSG00000141510\tGO:0034644\tBP\tIDA\n ENSG00000141510\tGO:0035035\tMF\tIPI\n ENSG00000141510\tGO:0035690\tBP\tIEP\n-ENSG00000141510\tGO:0042060\tBP\tIEA\n ENSG00000141510\tGO:0042149\tBP\tIDA\n ENSG00000141510\tGO:0042771\tBP\tIDA\n ENSG00000141510\tGO:0042771\tBP\tIMP\n@@ -683,12 +637,8 @@\n ENSG00000141510\tGO:0043065\tBP\tIDA\n ENSG00000141510\tGO:0043066\tBP\tIMP\n ENSG00000141510\tGO:0043153\tBP\tISS\n-ENSG00000141510\tGO:0043161\tBP\tTAS\n-ENSG00000141510\tGO:0043200\tBP\tIEA\n-ENSG00000141510\tGO:0043525\tBP\tIBA\n ENSG00000141510\tGO:0043621\tMF\tIPI\n ENSG00000141510\tGO:0044212\tMF\tIDA\n-ENSG00000141510\tGO:0045471\tBP\tIEA\n ENSG00000141510\tGO:0045892\tBP\tIDA\n ENSG00000141510\tGO:0045892\tBP\tIMP\n ENSG00000141510\tGO:0045892\tBP\tISS\n@@ -705,17 +655,14 @@\n ENSG00000141510\tGO:0047485\tMF\tIPI\n ENSG00000141510\tGO:0048147\tBP\tIMP\n ENSG00000141510\tGO:0048512\tBP\tISS\n-ENSG00000141510\tGO:0048662\tBP\tIEA\n ENSG00000141510\tGO:0050731\tBP\tISS\n ENSG00000141510\tGO:0051087\tMF\tIPI\n ENSG00000141510\tGO:0051097\tBP\tTAS\n ENSG00000141510\tGO:0051123\tBP\tIEA\n ENSG00000141510\tGO:0051262\tBP\tTAS\n ENSG00000141510\tGO:0051289\tBP\tIMP\n-ENSG00000141510\tGO:0051453\tBP\tIEA\n ENSG00000141510\tGO:0051721\tMF\tIPI\n ENSG00000141510\tGO:0051974\tBP\tIDA\n-ENSG00000141510\tGO:0055093\tBP\tIEA\n ENSG00000141510\tGO:0065003\tBP\tIDA\n ENSG00000141510\tGO:0070245\tBP\tISS\n ENSG00000141510\tGO:0071158\tBP\tIDA\n@@ -731,14 +678,14 @@\n ENSG00000141510\tGO:0090403\tBP\tIMP\n ENSG00000141510\tGO:0097193\tBP\tTAS\n ENSG00000141510\tGO:0097252\tBP\tIDA\n-ENSG00000141510\tGO:0097371\tMF\tIEA\n ENSG00000141510\tGO:0097718\tMF\tIPI\n ENSG00000141510\tGO:1900119\tBP\tIMP\n ENSG00000141510\tGO:1900740\tBP\tTAS\n ENSG00000141510\tGO:1901796\tBP\tTAS\n ENSG00000141510\tGO:1902749\tBP\tTAS\n ENSG00000141510\tGO:1902895\tBP\tIDA\n-ENSG00000141510\tGO:1903205\tBP\tIEA\n+ENSG00000141510\tGO:1903800\tBP\tIDA\n ENSG00000141510\tGO:1990440\tBP\tISS\n+ENSG00000141510\tGO:1990841\tMF\tIDA\n ENSG00000141510\tGO:2000379\tBP\tIMP\n ENSG00000141510\tGO:2001244\tBP\tIMP\n' |
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diff -r 38eedf3cc3c9 -r b467a89be0c6 test-data/out_gokegg_dupsrem.tab --- a/test-data/out_gokegg_dupsrem.tab Mon Jan 28 18:17:05 2019 -0500 +++ b/test-data/out_gokegg_dupsrem.tab Sat Feb 09 09:13:29 2019 -0500 |
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@@ -6,4 +6,4 @@ ENSG00000139618 GO:0000281 BP IDA ENSG00000129514 GO:0000122 BP IEA ENSG00000171862 GO:0000079 BP TAS -ENSG00000141510 GO:0000122 BP IBA +ENSG00000141510 GO:0000122 BP ISS |