| Next changeset 1:a8de96a8b8eb (2023-01-13) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 |
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qiime2__feature_table__heatmap.xml test-data/merge.test0.feature-table1.qza test-data/merge.test0.feature-table2.qza test-data/merge.test1.feature-table1.qza test-data/merge.test1.feature-table2.qza test-data/merge.test1.feature-table3.qza |
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| diff -r 000000000000 -r b4df421d7e75 qiime2__feature_table__heatmap.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__feature_table__heatmap.xml Mon Aug 29 19:56:45 2022 +0000 |
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| b'@@ -0,0 +1,338 @@\n+<?xml version=\'1.0\' encoding=\'utf-8\'?>\n+<!--\n+Copyright (c) 2022, QIIME 2 development team.\n+\n+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)\n+-->\n+<!--\n+This tool was automatically generated by:\n+ q2galaxy (version: 2022.8.1)\n+for:\n+ qiime2 (version: 2022.8.1)\n+-->\n+<tool name="qiime2 feature-table heatmap" id="qiime2__feature_table__heatmap" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">\n+ <description>Generate a heatmap representation of a feature table</description>\n+ <requirements>\n+ <container type="docker">quay.io/qiime2/core:2022.8</container>\n+ </requirements>\n+ <version_command>q2galaxy version feature_table</version_command>\n+ <command detect_errors="aggressive">q2galaxy run feature_table heatmap \'$inputs\'</command>\n+ <configfiles>\n+ <inputs name="inputs" data_style="paths"/>\n+ </configfiles>\n+ <inputs>\n+ <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The feature table to visualize.">\n+ <options options_filter_attribute="metadata.semantic_type">\n+ <filter type="add_value" value="FeatureTable[Frequency]"/>\n+ </options>\n+ <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in [\'FeatureTable[Frequency]\']</validator>\n+ </param>\n+ <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">\n+ <conditional name="sample_metadata">\n+ <param name="type" type="select" label="sample_metadata: MetadataColumn[Categorical]" help="[optional] Annotate the sample IDs with these sample metadata values. When metadata is present and `cluster`=\'feature\', samples will be sorted by the metadata values.">\n+ <option value="none" selected="true">None (default)</option>\n+ <option value="tsv">Metadata from TSV</option>\n+ <option value="qza">Metadata from Artifact</option>\n+ </param>\n+ <when value="none"/>\n+ <when value="tsv">\n+ <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>\n+ <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">\n+ <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator>\n+ </param>\n+ </when>\n+ <when value="qza">\n+ <param name="source" type="data" format="qza" label="Metadata Source"/>\n+ <param name="column" type="text" label="Column Name">\n+ <validator type="empty_field"/>\n+ </param>\n+ </when>\n+ </conditional>\n+ <conditional name="feature_metadata">\n+ <param name="type" type="select" label="feature_metadata: MetadataColumn[Categorical]" help="[optional] Annotate the feature IDs with these feature metadata values. When metadata is present and `cluster`=\'sample\', features will be sorted by the metadata values.">\n+ <option value="none" selected="true">None (default)</option>\n+ <option value="tsv">Metadata from TSV</option>\n+ <option value="qza">Metadata from Artifact</option>\n+ </param>\n+ <when value="none"/>\n+ <when value="tsv">\n+ <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>\n+ <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">\n+ <validator type="expression" message="The first column cannot be selecte'..b' <option value="gray_r">gray_r</option>\n+ <option value="hot">hot</option>\n+ <option value="hot_r">hot_r</option>\n+ <option value="hsv">hsv</option>\n+ <option value="hsv_r">hsv_r</option>\n+ <option value="icefire">icefire</option>\n+ <option value="icefire_r">icefire_r</option>\n+ <option value="inferno">inferno</option>\n+ <option value="inferno_r">inferno_r</option>\n+ <option value="jet">jet</option>\n+ <option value="jet_r">jet_r</option>\n+ <option value="magma">magma</option>\n+ <option value="magma_r">magma_r</option>\n+ <option value="mako">mako</option>\n+ <option value="mako_r">mako_r</option>\n+ <option value="nipy_spectral">nipy_spectral</option>\n+ <option value="nipy_spectral_r">nipy_spectral_r</option>\n+ <option value="ocean">ocean</option>\n+ <option value="ocean_r">ocean_r</option>\n+ <option value="pink">pink</option>\n+ <option value="pink_r">pink_r</option>\n+ <option value="plasma">plasma</option>\n+ <option value="plasma_r">plasma_r</option>\n+ <option value="prism">prism</option>\n+ <option value="prism_r">prism_r</option>\n+ <option value="rainbow">rainbow</option>\n+ <option value="rainbow_r">rainbow_r</option>\n+ <option value="rocket" selected="true">rocket</option>\n+ <option value="rocket_r">rocket_r</option>\n+ <option value="seismic">seismic</option>\n+ <option value="seismic_r">seismic_r</option>\n+ <option value="spectral">spectral</option>\n+ <option value="spectral_r">spectral_r</option>\n+ <option value="spring">spring</option>\n+ <option value="spring_r">spring_r</option>\n+ <option value="summer">summer</option>\n+ <option value="summer_r">summer_r</option>\n+ <option value="tab10">tab10</option>\n+ <option value="tab10_r">tab10_r</option>\n+ <option value="tab20">tab20</option>\n+ <option value="tab20_r">tab20_r</option>\n+ <option value="tab20b">tab20b</option>\n+ <option value="tab20b_r">tab20b_r</option>\n+ <option value="tab20c">tab20c</option>\n+ <option value="tab20c_r">tab20c_r</option>\n+ <option value="terrain">terrain</option>\n+ <option value="terrain_r">terrain_r</option>\n+ <option value="viridis">viridis</option>\n+ <option value="viridis_r">viridis_r</option>\n+ <option value="vlag">vlag</option>\n+ <option value="vlag_r">vlag_r</option>\n+ <option value="winter">winter</option>\n+ <option value="winter_r">winter_r</option>\n+ </param>\n+ </section>\n+ </inputs>\n+ <outputs>\n+ <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>\n+ </outputs>\n+ <tests/>\n+ <help>\n+QIIME 2: feature-table heatmap\n+==============================\n+Generate a heatmap representation of a feature table\n+\n+\n+Outputs:\n+--------\n+:visualization.qzv: <no description>\n+\n+| \n+\n+Description:\n+------------\n+Generate a heatmap representation of a feature table with optional clustering on both the sample and feature axes.\n+\n+Tip: To generate a heatmap containing taxonomic annotations, use `qiime taxa collapse` to collapse the feature table at the desired taxonomic level.\n+\n+\n+| \n+\n+</help>\n+ <citations>\n+ <citation type="doi">10.1109/MCSE.2007.55</citation>\n+ <citation type="doi">10.1038/s41587-019-0209-9</citation>\n+ </citations>\n+</tool>\n' |
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