Repository 'blast2html'
hg clone https://toolshed.g2.bx.psu.edu/repos/jankanis/blast2html

Changeset 64:b68c04bf6912 (2014-06-03)
Previous changeset 63:fb823a59918f (2014-05-28) Next changeset 65:c546e759bf2a (2014-06-04)
Commit message:
work around missing ld library path for libxml
modified:
tool_dependencies.xml
b
diff -r fb823a59918f -r b68c04bf6912 tool_dependencies.xml
--- a/tool_dependencies.xml Wed May 28 16:55:11 2014 +0200
+++ b/tool_dependencies.xml Tue Jun 03 16:12:50 2014 +0200
[
@@ -43,12 +43,14 @@
         </action>
         
         <action type="set_environment">
-   <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment -->
+          <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment -->
           <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages</environment_variable>
           <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable>
           <environment_variable name="PYTHONHOME" action="set_to"></environment_variable>
-   <!-- To find shared libraries such as libssl or libxml2 -->
+          <!-- To find shared libraries such as libssl or libxml2 -->
           <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable>
+          <!-- libxml2 doesn't actually export its own LD_LIBRARY_PATH -->
+          <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LIBXML_ROOT_PATH]/lib</environment_variable>
         </action>
       </actions>
     </install>