| Previous changeset 2:6943fbec145c (2020-02-13) Next changeset 4:93a0cf4ea5fc (2020-02-16) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4" |
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modified:
hyphy_fubar.xml macros.xml |
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| diff -r 6943fbec145c -r b73b35db4664 hyphy_fubar.xml --- a/hyphy_fubar.xml Thu Feb 13 15:01:46 2020 -0500 +++ b/hyphy_fubar.xml Fri Feb 14 16:45:00 2020 -0500 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_fubar" name="HyPhy-FUBAR" version="@VERSION@+galaxy0"> +<tool id="hyphy_fubar" name="HyPhy-FUBAR" version="@VERSION@+galaxy1"> <description>Fast Unconstrained Bayesian AppRoximation</description> <macros> <import>macros.xml</import> @@ -8,7 +8,7 @@ <command detect_errors="exit_code"><![CDATA[ ln -s '$input_file' fubar_input.fa && ln -s '$input_nhx' fubar_input.nhx && - @HYPHY_INVOCATION@ fubar + hyphy fubar --alignment ./fubar_input.fa --tree ./fubar_input.nhx --code '$gencodeid' @@ -38,7 +38,7 @@ </inputs> <outputs> <data name="fubar_log" format="txt"/> - <data name="fubar_output" format="hyphy_results.json" from_work_dir="fubar_input.fa.FUBAR.json"/> + <data name="fubar_output" format="hyphy_results.json" from_work_dir="fubar_input.fa.FUBAR.json" /> </outputs> <tests> <test> |
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| diff -r 6943fbec145c -r b73b35db4664 macros.xml --- a/macros.xml Thu Feb 13 15:01:46 2020 -0500 +++ b/macros.xml Fri Feb 14 16:45:00 2020 -0500 |
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| @@ -80,6 +80,7 @@ <yield/> </requirements> </xml> + <token name="@HYPHYMPI@">mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI</token> <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` && export HYPHY_PATH=`dirname \$HYPHY` && export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> |