| Previous changeset 6:af3c1dc1d141 (2024-01-25) Next changeset 8:73b018c57e96 (2024-03-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit dfe519563a762fc72953e4754f76effe5e16cfec |
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modified:
mitos2.xml |
| b |
| diff -r af3c1dc1d141 -r b815ec682418 mitos2.xml --- a/mitos2.xml Thu Jan 25 16:47:56 2024 +0000 +++ b/mitos2.xml Tue Feb 06 12:36:49 2024 +0000 |
| b |
| @@ -4,7 +4,7 @@ <import>macros.xml</import> <token name="@MITOS_NAME@">MITOS2</token> <token name="@TOOL_VERSION@">2.1.7</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <xrefs> <xref type="bio.tools">mitos</xref> @@ -47,7 +47,7 @@ --maxtrnaovl $advanced_ncrna.maxtrnaovl --maxrrnaovl $advanced_ncrna.maxrrnaovl -#if not ("protein_plot" in $addoutputs or "ncRNA_plot" in $addoutputs): +#if not ("protein_plot" in $addoutputs or "ncRNA_plot" in $addoutputs or "ncRNA_structure_svg_plots" in $addoutputs): --noplots #end if #if "raw" in str($addoutputs).split(','): @@ -294,17 +294,18 @@ </assert_command> </test> <!-- missing genes --> - <test expect_num_outputs="2"> + <test expect_num_outputs="3"> <param name="input" value="NC_012920.fasta"/> <param name="code" value="2"/> <param name="refseqver" value="mitos2-refdata" /> - <param name="addoutputs" value="bed,missing"/> + <param name="addoutputs" value="bed,missing,ncRNA_structure_svg_plots"/> <output name="bedout" file="mitos2_NC_012920.bed" compare="re_match" ftype="bed"/> <output name="missing_genes" ftype="txt"> <assert_contents> <has_size value="167"/> </assert_contents> </output> + <output_collection name="ncRNA_structure_plot_svg_out" type="list" count="5"/> <assert_command> <has_text text="--code 2"/> <has_text text="--finovl 50"/> @@ -323,7 +324,7 @@ <has_text text="--ncev 0.01"/> <has_text text="--maxtrnaovl 50"/> <has_text text="--maxrrnaovl 50"/> - <has_text text="--noplots"/> + <has_text text="--noplots" negate="true"/> </assert_command> </test> </tests> |