| Next changeset 1:f8fecf1f6eba (2015-07-31) |
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Commit message:
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_pysam_0_8_2 commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty |
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added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r b8d22acd3017 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 21 07:22:19 2015 -0400 |
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| @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ez_setup" version="0.9"> + <!-- + If cross-toolshed depenencies become allowed use the following: + <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + --> + <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="pysam" version="0.8.2.1"> + <install version="1.0"> + <actions> + <action md5sum="daf63c1665fa601fc942f050f334a627" type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action> + <action type="set_environment_for_install"> + <!-- + If cross-toolshed depenencies become allowed use the following: + <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + --> + <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="ez_setup" version="0.9" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH. + The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library. + </readme> + </package> +</tool_dependency> |