| Previous changeset 1:4c42094885ac (2024-04-25) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit c7e80dcda727ce63b42aa8a946e9330310929797 |
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modified:
qiime2__quality_control__decontam_score_viz.xml |
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| diff -r 4c42094885ac -r b9547e911efd qiime2__quality_control__decontam_score_viz.xml --- a/qiime2__quality_control__decontam_score_viz.xml Thu Apr 25 21:18:52 2024 +0000 +++ b/qiime2__quality_control__decontam_score_viz.xml Mon Jun 03 23:30:19 2024 +0000 |
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| @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.2.1) + q2galaxy (version: 2024.5.0) for: - qiime2 (version: 2024.2.0) + qiime2 (version: 2024.5.0) --> -<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 quality-control decontam-score-viz" id="qiime2__quality_control__decontam_score_viz" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> <description>Generate a histogram representation of the scores</description> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.2</container> + <container type="docker">quay.io/qiime2/amplicon:2024.5</container> </requirements> <version_command>q2galaxy version quality_control</version_command> <command detect_errors="exit_code">q2galaxy run quality_control decontam_score_viz '$inputs'</command> @@ -32,9 +32,15 @@ </options> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> - <param name="threshold" type="float" value="0.1" label="threshold: Float" help="[default: 0.1] Select threshold cutoff for decontam algorithm scores"/> + <param name="rep_seqs" type="data" format="qza" optional="true" label="rep_seqs: FeatureData[Sequence]" help="[optional] Representative Sequences table which contaminate sequences will be removed from"> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[Sequence]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator> + </param> + <param name="threshold" type="float" min="0.0" max="1.0" value="0.1" label="threshold: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.1] Select threshold cutoff for decontam algorithm scores"/> <param name="weighted" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="weighted: Bool" help="[default: Yes] weight the decontam scores by their associated read number"/> - <param name="bin_size" type="float" value="0.02" label="bin_size: Float" help="[default: 0.02] Select bin size for the histogram"/> + <param name="bin_size" type="float" min="0.0" max="1.0" value="0.02" label="bin_size: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.02] Select bin size for the histogram"/> </section> </inputs> <outputs> |