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Commit message:
planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty |
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modified:
chimerascan/__init__.py chimerascan/chimerascan_index.py chimerascan_run.py |
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added:
COPYING MANIFEST.in PKG-INFO THANKS run.sh setup-cython.py setup.py tests/mcf7_pe_35bp/AHCYL1-RAD51C_1.fq tests/mcf7_pe_35bp/AHCYL1-RAD51C_2.fq tests/mcf7_pe_35bp/ARFGEF2-SULF2_1.fq tests/mcf7_pe_35bp/ARFGEF2-SULF2_2.fq tests/mcf7_pe_35bp/BC035340-MCF2L_1.fq tests/mcf7_pe_35bp/BC035340-MCF2L_2.fq tests/mcf7_pe_35bp/BCAS4-BCAS3_1.fq tests/mcf7_pe_35bp/BCAS4-BCAS3_2.fq tests/mcf7_pe_35bp/CXorf15-SYAP1_1.fq tests/mcf7_pe_35bp/CXorf15-SYAP1_2.fq tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_1.fq tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_2.fq tests/mcf7_pe_35bp/EP300-MRFAP1_1.fq tests/mcf7_pe_35bp/EP300-MRFAP1_2.fq tests/mcf7_pe_35bp/EWSR1-TFF1_1.fq tests/mcf7_pe_35bp/EWSR1-TFF1_2.fq tests/mcf7_pe_35bp/MRFAP1-EP300_1.fq tests/mcf7_pe_35bp/MRFAP1-EP300_2.fq tests/mcf7_pe_35bp/MYO9B-FCHO1_1.fq tests/mcf7_pe_35bp/MYO9B-FCHO1_2.fq tests/mcf7_pe_35bp/NAV1-GPR37L1_1.fq tests/mcf7_pe_35bp/NAV1-GPR37L1_2.fq tests/mcf7_pe_35bp/PAPOLA-AK7_1.fq tests/mcf7_pe_35bp/PAPOLA-AK7_2.fq tests/mcf7_pe_35bp/RPS6KB1-TMEM49_1.fq tests/mcf7_pe_35bp/RPS6KB1-TMEM49_2.fq tests/mcf7_pe_35bp/STK11-MIDN_1.fq tests/mcf7_pe_35bp/STK11-MIDN_2.fq tests/mcf7_pe_35bp/SULF2-PRICKLE2_1.fq tests/mcf7_pe_35bp/SULF2-PRICKLE2_2.fq tests/vcap_pe_53bp/APP-AR_1.fq tests/vcap_pe_53bp/APP-AR_2.fq tests/vcap_pe_53bp/BC018860-NDRG1_1.fq tests/vcap_pe_53bp/BC018860-NDRG1_2.fq tests/vcap_pe_53bp/BC021729-FRY_1.fq tests/vcap_pe_53bp/BC021729-FRY_2.fq tests/vcap_pe_53bp/HJURP-EIF4E2_1.fq tests/vcap_pe_53bp/HJURP-EIF4E2_2.fq tests/vcap_pe_53bp/INPP4A-HJURP_1.fq tests/vcap_pe_53bp/INPP4A-HJURP_2.fq tests/vcap_pe_53bp/PIK3C2A-TEAD1_1.fq tests/vcap_pe_53bp/PIK3C2A-TEAD1_2.fq tests/vcap_pe_53bp/RANBP17-DOCK2_1.fq tests/vcap_pe_53bp/RANBP17-DOCK2_2.fq tests/vcap_pe_53bp/RC3H2-RGS3_1.fq tests/vcap_pe_53bp/RC3H2-RGS3_2.fq tests/vcap_pe_53bp/TMPRSS2-ERG_1.fq tests/vcap_pe_53bp/TMPRSS2-ERG_2.fq tests/vcap_pe_53bp/TYMP-SCO2_1.fq tests/vcap_pe_53bp/TYMP-SCO2_2.fq tests/vcap_pe_53bp/USP10-ZDHHC7_1.fq tests/vcap_pe_53bp/USP10-ZDHHC7_2.fq tests/vcap_pe_53bp/VWA2-PRKCH_1.fq tests/vcap_pe_53bp/VWA2-PRKCH_2.fq tests/vcap_pe_53bp/ZDHHC7-ABCB9_1.fq tests/vcap_pe_53bp/ZDHHC7-ABCB9_2.fq tests/vcap_pe_53bp/ZNF649-ZNF577_1.fq tests/vcap_pe_53bp/ZNF649-ZNF577_2.fq |
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removed:
chimerascan/__init__.pyc chimerascan/bx/__init__.pyc chimerascan/bx/cluster.so chimerascan/bx/intersection.so chimerascan/lib/__init__.pyc chimerascan/lib/base.pyc chimerascan/lib/batch_sort.pyc chimerascan/lib/chimera.pyc chimerascan/lib/config.pyc chimerascan/lib/feature.pyc chimerascan/lib/fragment_size_distribution.pyc chimerascan/lib/gene_to_genome.pyc chimerascan/lib/sam.pyc chimerascan/lib/seq.pyc chimerascan/pipeline/__init__.pyc chimerascan/pipeline/align_bowtie.pyc chimerascan/pipeline/chimeras_to_breakpoints.pyc chimerascan/pipeline/discordant_reads_to_bedpe.pyc chimerascan/pipeline/fastq_inspect_reads.pyc chimerascan/pipeline/filter_chimeras.pyc chimerascan/pipeline/filter_homologous_genes.pyc chimerascan/pipeline/find_discordant_reads.pyc chimerascan/pipeline/merge_spanning_alignments.pyc chimerascan/pipeline/nominate_chimeras.pyc chimerascan/pipeline/nominate_spanning_reads.pyc chimerascan/pipeline/resolve_discordant_reads.pyc chimerascan/pipeline/write_output.pyc chimerascan/pysam/Pileup.pyc chimerascan/pysam/__init__.pyc chimerascan/pysam/_cffi_backend.so chimerascan/pysam/_yaml.so chimerascan/pysam/csamtools.so chimerascan/pysam/ctabix.so chimerascan/pysam/version.pyc test-data/input1.fastq test-data/input2.fastq test-data/outputfile.bed |
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| diff -r d85dea371064 -r b9877fa1159a COPYING --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/COPYING Tue Sep 12 13:57:02 2017 -0400 |
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| b'@@ -0,0 +1,674 @@\n+ GNU GENERAL PUBLIC LICENSE\n+ Version 3, 29 June 2007\n+\n+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>\n+ Everyone is permitted to copy and distribute verbatim copies\n+ of this license document, but changing it is not allowed.\n+\n+ Preamble\n+\n+ The GNU General Public License is a free, copyleft license for\n+software and other kinds of works.\n+\n+ The licenses for most software and other practical works are designed\n+to take away your freedom to share and change the works. By contrast,\n+the GNU General Public License is intended to guarantee your freedom to\n+share and change all versions of a program--to make sure it remains free\n+software for all its users. We, the Free Software Foundation, use the\n+GNU General Public License for most of our software; it applies also to\n+any other work released this way by its authors. You can apply it to\n+your programs, too.\n+\n+ When we speak of free software, we are referring to freedom, not\n+price. Our General Public Licenses are designed to make sure that you\n+have the freedom to distribute copies of free software (and charge for\n+them if you wish), that you receive source code or can get it if you\n+want it, that you can change the software or use pieces of it in new\n+free programs, and that you know you can do these things.\n+\n+ To protect your rights, we need to prevent others from denying you\n+these rights or asking you to surrender the rights. Therefore, you have\n+certain responsibilities if you distribute copies of the software, or if\n+you modify it: responsibilities to respect the freedom of others.\n+\n+ For example, if you distribute copies of such a program, whether\n+gratis or for a fee, you must pass on to the recipients the same\n+freedoms that you received. You must make sure that they, too, receive\n+or can get the source code. And you must show them these terms so they\n+know their rights.\n+\n+ Developers that use the GNU GPL protect your rights with two steps:\n+(1) assert copyright on the software, and (2) offer you this License\n+giving you legal permission to copy, distribute and/or modify it.\n+\n+ For the developers\' and authors\' protection, the GPL clearly explains\n+that there is no warranty for this free software. For both users\' and\n+authors\' sake, the GPL requires that modified versions be marked as\n+changed, so that their problems will not be attributed erroneously to\n+authors of previous versions.\n+\n+ Some devices are designed to deny users access to install or run\n+modified versions of the software inside them, although the manufacturer\n+can do so. This is fundamentally incompatible with the aim of\n+protecting users\' freedom to change the software. The systematic\n+pattern of such abuse occurs in the area of products for individuals to\n+use, which is precisely where it is most unacceptable. Therefore, we\n+have designed this version of the GPL to prohibit the practice for those\n+products. If such problems arise substantially in other domains, we\n+stand ready to extend this provision to those domains in future versions\n+of the GPL, as needed to protect the freedom of users.\n+\n+ Finally, every program is threatened constantly by software patents.\n+States should not allow patents to restrict development and use of\n+software on general-purpose computers, but in those that do, we wish to\n+avoid the special danger that patents applied to a free program could\n+make it effectively proprietary. To prevent this, the GPL assures that\n+patents cannot be used to render the program non-free.\n+\n+ The precise terms and conditions for copying, distribution and\n+modification follow.\n+\n+ TERMS AND CONDITIONS\n+\n+ 0. Definitions.\n+\n+ "This License" refers to version 3 of the GNU General Public License.\n+\n+ "Copyright" also means copyright-like laws that apply to other kinds of\n+works, such as semiconductor masks.\n+\n+ "The Program" refers to a'..b'THE PROGRAM\n+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF\n+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.\n+\n+ 16. Limitation of Liability.\n+\n+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING\n+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS\n+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY\n+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE\n+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF\n+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD\n+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),\n+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF\n+SUCH DAMAGES.\n+\n+ 17. Interpretation of Sections 15 and 16.\n+\n+ If the disclaimer of warranty and limitation of liability provided\n+above cannot be given local legal effect according to their terms,\n+reviewing courts shall apply local law that most closely approximates\n+an absolute waiver of all civil liability in connection with the\n+Program, unless a warranty or assumption of liability accompanies a\n+copy of the Program in return for a fee.\n+\n+ END OF TERMS AND CONDITIONS\n+\n+ How to Apply These Terms to Your New Programs\n+\n+ If you develop a new program, and you want it to be of the greatest\n+possible use to the public, the best way to achieve this is to make it\n+free software which everyone can redistribute and change under these terms.\n+\n+ To do so, attach the following notices to the program. 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If not, see <http://www.gnu.org/licenses/>.\n+\n+Also add information on how to contact you by electronic and paper mail.\n+\n+ If the program does terminal interaction, make it output a short\n+notice like this when it starts in an interactive mode:\n+\n+ <program> Copyright (C) <year> <name of author>\n+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w\'.\n+ This is free software, and you are welcome to redistribute it\n+ under certain conditions; type `show c\' for details.\n+\n+The hypothetical commands `show w\' and `show c\' should show the appropriate\n+parts of the General Public License. Of course, your program\'s commands\n+might be different; for a GUI interface, you would use an "about box".\n+\n+ You should also get your employer (if you work as a programmer) or school,\n+if any, to sign a "copyright disclaimer" for the program, if necessary.\n+For more information on this, and how to apply and follow the GNU GPL, see\n+<http://www.gnu.org/licenses/>.\n+\n+ The GNU General Public License does not permit incorporating your program\n+into proprietary programs. If your program is a subroutine library, you\n+may consider it more useful to permit linking proprietary applications with\n+the library. If this is what you want to do, use the GNU Lesser General\n+Public License instead of this License. But first, please read\n+<http://www.gnu.org/philosophy/why-not-lgpl.html>.\n' |
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| diff -r d85dea371064 -r b9877fa1159a MANIFEST.in --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/MANIFEST.in Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -0,0 +1,42 @@ +# +# Use .add_data_files and .add_data_dir methods in a appropriate +# setup.py files to include non-python files such as documentation, +# data, etc files to distribution. Avoid using MANIFEST.in for that. +# + +include MANIFEST.in +include COPYING +include INSTALL +include KNOWN_BUGS +include THANKS + +# bx-python +include chimerascan/bx/intervalcluster.h + +# pysam +include chimerascan/pysam/csamtools.pxd +include chimerascan/pysam/ctabix.pxd +include chimerascan/pysam/pysam_util.h +include chimerascan/pysam/samtools/*.h +include chimerascan/pysam/tabix/*.h + +# pysam tests +include chimerascan/pysam/tests/00README.txt +include chimerascan/pysam/tests/Makefile +include chimerascan/pysam/tests/ex1.fa +include chimerascan/pysam/tests/ex1.sam.gz +include chimerascan/pysam/tests/ex3.sam +include chimerascan/pysam/tests/ex4.sam +include chimerascan/pysam/tests/ex5.sam +include chimerascan/pysam/tests/ex6.sam +include chimerascan/pysam/tests/ex7.sam +include chimerascan/pysam/tests/ex8.sam +include chimerascan/pysam/tests/example.py +include chimerascan/pysam/tests/pysam_test.py +include chimerascan/pysam/tests/segfault_tests.py + +# tabix tests +include chimerascan/pysam/tests/tabix_test.py +include chimerascan/pysam/tests/example.gtf.gz +include chimerascan/pysam/tests/example.gtf.gz.tbi + |
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| diff -r d85dea371064 -r b9877fa1159a PKG-INFO --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PKG-INFO Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -0,0 +1,16 @@ +Metadata-Version: 1.0 +Name: chimerascan +Version: 0.4.3-1 +Summary: chimerascan +Home-page: http://code.google.com/p/chimerascan/ +Author: Matthew Iyer +Author: Christopher Maher +Author-email: matthew.iyer@gmail.com +License: GPL3 +Description: + + chimerascan + *********** + + +Platform: ALL |
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| diff -r d85dea371064 -r b9877fa1159a THANKS --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/THANKS Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -0,0 +1,18 @@ +We would like to thank James Taylor and the bx-python team for the +efficient interval tree implementation. The interval tree and +cluster tree implementations are well written and fast and help to +build the foundation of chimerascan. + +We would also like to thank Andreas Heger (andreas.heger) and the +'pysam' team for there excellent package. Pysam is used in almost +every stage of the chimerascan pipeline and facilitated rapid +prototyping and development of the tool. We appreciate their +efforts to make samtools accessible to the python community. + +Christopher Maher wrote the original 'chimerascan' in Perl and was +among the first to use a bioinformatics approach to discover gene +fusions in cancer. The Perl implementation was used as a basis for +this version. + +Finally, we would like to thank Arul Chinnaiyan and members of the +Chinnaiyan Lab for their support. \ No newline at end of file |
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| diff -r d85dea371064 -r b9877fa1159a chimerascan_run.py --- a/chimerascan_run.py Thu Sep 07 17:55:18 2017 -0400 +++ b/chimerascan_run.py Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -31,6 +31,13 @@ __email__ = "mkiyer@med.umich.edu" __status__ = "beta" +### +# +# Modified by +# Baekdoo Kim(baegi7942@gmail.com) +# +### + import logging import os import subprocess |
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| diff -r d85dea371064 -r b9877fa1159a run.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/run.sh Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -0,0 +1,6 @@ +#!/usr/bin/bash + +if [ "$(cat installation_chk 2>&1)" != "true" ]; then + python setup.py build && python setup.py install + echo true > installation_chk +fi |
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| diff -r d85dea371064 -r b9877fa1159a setup-cython.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/setup-cython.py Tue Sep 12 13:57:02 2017 -0400 |
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| @@ -0,0 +1,19 @@ +''' +Created on Feb 3, 2011 + +@author: mkiyer +''' +from distutils.core import setup +from distutils.extension import Extension +from Cython.Distutils import build_ext + +# local imports +from setup import get_cython_extension_modules, setup_kwargs + +def main(): + setup(ext_modules=get_cython_extension_modules(), + cmdclass={'build_ext': build_ext}, + **setup_kwargs) + +if __name__ == '__main__': + main() \ No newline at end of file |
| b |
| diff -r d85dea371064 -r b9877fa1159a setup.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/setup.py Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,108 @@ +''' +chimerascan + +Created on Jan 5, 2011 + +@author: mkiyer +''' +from distutils.core import setup +from distutils.extension import Extension + +import os +import glob + +# local imports +import chimerascan + +# ------ Setup instructions ------------------------------------------------- + +setup_kwargs = {"name": "chimerascan", + "version": chimerascan.__version__, + "description": "chimeric transcript discovery from RNA-seq", + "long_description": __doc__, + "author": "Matthew Iyer", + "author_email": "mkiyer@umich.edu", + "license": "GPL3", + "platforms": "Linux", + "url": "http://chimerascan.googlecode.com", + "packages": ["chimerascan", + "chimerascan.pysam", + "chimerascan.bx", + "chimerascan.pipeline", + "chimerascan.lib", + "chimerascan.tools"], + "package_data": {'chimerascan.tools': ['table_template.html']}, + "scripts": ["chimerascan/chimerascan_run.py", + "chimerascan/chimerascan_index.py", + "chimerascan/tools/chimerascan_html_table.py", + "chimerascan/tools/gtf_to_genepred.py", + "chimerascan/tools/make_false_positive_file.py"]} + +# ---- Extension Modules ---------------------------------------------------- + +def get_cython_extension_modules(): + # pysam - samtools + samtools = Extension("chimerascan.pysam.csamtools", # name of extension + ["chimerascan/pysam/csamtools.pyx", + "chimerascan/pysam/pysam_util.c"] +\ + glob.glob( os.path.join( "chimerascan", "pysam", "samtools", "*.c" )), + library_dirs=[], + include_dirs=[ "chimerascan/pysam/samtools", "chimerascan/pysam" ], + libraries=[ "z", ], + language="c", + define_macros = [('FILE_OFFSET_BITS','64'), + ('_USE_KNETFILE','')]) + # pysam - tabix + tabix = Extension("chimerascan.pysam.ctabix", # name of extension + ["chimerascan/pysam/ctabix.pyx" ] +\ + glob.glob(os.path.join("chimerascan", "pysam", "tabix", "*.c")), + library_dirs=[], + include_dirs=[ "chimerascan/pysam/tabix", "chimerascan/pysam" ], + libraries=[ "z", ], + language="c", + ) + # Interval clustering + bx_cluster = Extension("chimerascan.bx.cluster", + ["chimerascan/bx/cluster.pyx", "chimerascan/bx/intervalcluster.c"], + include_dirs=["chimerascan/bx"]) + # Interval intersection + bx_interval = Extension("chimerascan.bx.intersection", + ["chimerascan/bx/intersection.pyx" ]) + return [samtools, tabix, bx_cluster, bx_interval] + +def get_c_extension_modules(): + # pysam - samtools + samtools = Extension("chimerascan.pysam.csamtools", # name of extension + ["chimerascan/pysam/csamtools.c", + "chimerascan/pysam/pysam_util.c"] +\ + glob.glob( os.path.join( "chimerascan", "pysam", "samtools", "*.c" )), + library_dirs=[], + include_dirs=[ "chimerascan/pysam/samtools", "chimerascan/pysam" ], + libraries=[ "z", ], + language="c", + define_macros = [('FILE_OFFSET_BITS','64'), + ('_USE_KNETFILE','')]) + # pysam - tabix + tabix = Extension("chimerascan.pysam.ctabix", # name of extension + ["chimerascan/pysam/ctabix.c" ] +\ + glob.glob(os.path.join("chimerascan", "pysam", "tabix", "*.c")), + library_dirs=[], + include_dirs=[ "chimerascan/pysam/tabix", "chimerascan/pysam" ], + libraries=[ "z", ], + language="c", + ) + # Interval clustering + bx_cluster = Extension("chimerascan.bx.cluster", + ["chimerascan/bx/cluster.c", "chimerascan/bx/intervalcluster.c"], + include_dirs=["chimerascan/bx"]) + # Interval intersection + bx_interval = Extension("chimerascan.bx.intersection", + ["chimerascan/bx/intersection.c"]) + return [samtools, tabix, bx_cluster, bx_interval] + +def main(): + setup(ext_modules=get_c_extension_modules(), + **setup_kwargs) + +if __name__ == '__main__': + main() \ No newline at end of file |
| b |
| diff -r d85dea371064 -r b9877fa1159a test-data/input1.fastq --- a/test-data/input1.fastq Thu Sep 07 17:55:18 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,200484 +0,0 @@\n-@ERR030881.107 HWI-BRUNOP16X_0001:2:1:13663:1096#0/1\n-ATCTTTTGTGGCTACAGTAAGTTCAATCTGAAGTCAAAACCAACCAATTT\n-+\n-5.544,444344555CC?CAEF@EEFFFFFFFFFFFFFFFFFEFFFEFFF\n-@ERR030881.311 HWI-BRUNOP16X_0001:2:1:18330:1130#0/1\n-TCCATACATAGGCCTCGGGGTGGGGGAGTCAGAAGCCCCCAGACCCTGTG\n-+\n-GFFFGFFBFCHHHHHHHHHHIHEEE@@@=GHGHHHHHHHHHHHHHHHHHH\n-@ERR030881.1487 HWI-BRUNOP16X_0001:2:1:4144:1420#0/1\n-GTATAACGCTAGACACAGCGGAGCTCGGGATTGGCTAAACTCCCATAGTA\n-+\n-55*'+&&5'55('''888:8FFFFFFFFFF4/1;/4./++FFFFF=5:E#\n-@ERR030881.9549 HWI-BRUNOP16X_0001:2:1:1453:3458#0/1\n-AACGGATCCATTGTTTCGAGAACGTGATCGCCCTCATCTACCTAGCCTCA\n-+\n-D<@DDA@A:AHHHHHHHHHHHHHHIHHHHHHHHHHHHHHHHHBHHHHHHH\n-@ERR030881.13497 HWI-BRUNOP16X_0001:2:1:16344:4145#0/1\n-GCTAATCCGACTTCTCGCCATCATCCTCCTGGTGGGTGTCACCATCGTGC\n-+\n-F@FFFGGFGFHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHH\n-@ERR030881.14070 HWI-BRUNOP16X_0001:2:1:4377:4232#0/1\n-TGGACAGTTGCTCCTGGCTCCAGAACCTGTCTTGCAAGGGACAGTGGGGT\n-+\n-A:AA@HHHHHHHHHHHHHHHHHHHIHHHHHHHHHHGF=GFHHHH@@?AA*\n-@ERR030881.16375 HWI-BRUNOP16X_0001:2:1:2265:4573#0/1\n-ATTAGGAAACATGGAATTTTTTTAAAGGTTTTTCTTGTATCTTTTTTTTT\n-+\n-@<><CHHHHHHHHHHHHHHHHHGGHHHHHHHHHHGGGHHHHHHHHGGGGG\n-@ERR030881.18437 HWI-BRUNOP16X_0001:2:1:13904:4828#0/1\n-CAATAGCCAGATGGTTGGTGGGGCAGCCAGGCAGGGAGGACCCAGGGCTG\n-+\n-555544555544555;AAAAFFBBEEEE;=FCB9F===<<FFFFEFFEEE\n-@ERR030881.18768 HWI-BRUNOP16X_0001:2:1:15563:4868#0/1\n-GTGCCAAATTGTCACATTCGAGCTTGAGGCTGTGGTACTGAGCTTGCAGT\n-+\n-D>BFD@@?>>54454?FFGFGGGGGGGGGGGGGEGGGGGGGGGEGGGGGG\n-@ERR030881.20718 HWI-BRUNOP16X_0001:2:1:12184:5115#0/1\n-CCCGGCCTAACTTTCATTTAATTTCAATGAATTTTCTTTTTTTTTTTTTT\n-+\n-56455==@=>HHHHHHHHHGHHHHHHHHGH=HHHHHHEEEECEEEEEEEE\n-@ERR030881.22833 HWI-BRUNOP16X_0001:2:1:13089:5358#0/1\n-GGAGAAGGGGCGAGGGAAGAAGACCTTTGCTATCCCAGATACCAGGACTG\n-+\n-55544145444/444GFDFG9A@@@DD>.F@><<=FDD@AGG>GGEGGEG\n-@ERR030881.23643 HWI-BRUNOP16X_0001:2:1:7921:5452#0/1\n-CGGCCCCCTGCTAATCCGACTTCTCGCCATCATCCTCCTGGTGGGTGTCA\n-+\n-FBDFFHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHDHHHH\n-@ERR030881.28299 HWI-BRUNOP16X_0001:2:1:6428:5960#0/1\n-ATGAGAAGGAGCCATCAGGACCTTATGAAAGCGACGAAGACAAGAGTGAT\n-+\n-55554DDFFFBBFFFHHGHHHHHHHHHHHHHHHHHHDHH8HHHHHHHHFH\n-@ERR030881.28475 HWI-BRUNOP16X_0001:2:1:14780:5977#0/1\n-CGAAAACCAACTCTTTACCTAACTTTGCATGGTGCTTAGTCAAGGACTCC\n-+\n-555,4&4551FFFFFBF3BDFFFFFFEFFFFBEFFFFFFDFFFFFFFFF=\n-@ERR030881.29253 HWI-BRUNOP16X_0001:2:1:1570:6070#0/1\n-GGAATGTTTAGCACAAGACACAGCGGAGCTCGGGATTGGCTAAACTCCCA\n-+\n-HGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.30545 HWI-BRUNOP16X_0001:2:1:4103:6216#0/1\n-CAACTCTTTACCTAACTTTGCATGGTGCTTAGTCAAGGACTCCTGCGACC\n-+\n-54-55A@A@@HHHHHFFGGE555558<=;=55555AAAA?HHHHH>8@@>\n-@ERR030881.32582 HWI-BRUNOP16X_0001:2:1:12474:6471#0/1\n-CTTGCCTCACATGTCAGGGCAGGTATCCACCTAACCAGGCTGCAGGGGAG\n-+\n-555555544444544HHHHGHHHHHHHHHHHHHHHHHHHHHH5@HFFF*F\n-@ERR030881.33730 HWI-BRUNOP16X_0001:2:1:14154:6628#0/1\n-CCAGCCTTGATACAGCATTTTCCACTTCTCTCTGTAGAGATCAGACGATT\n-+\n-55555555(5@>@=:@=8.@04554CCCCC.441445444-555445555\n-@ERR030881.35226 HWI-BRUNOP16X_0001:2:1:3903:6867#0/1\n-CAGCATCCTGCTTAGGGCCCTGGAAACTGGGGAAATAGGTAGCCAGGTGG\n-+\n-55555A@AAAGGEGGGGGGGGGGGGGGGGGGGCGGGFEGFGGGGFGGCGG\n-@ERR030881.38182 HWI-BRUNOP16X_0001:2:1:17495:7451#0/1\n-CACCATCGTGCCCGTTCTTGTCTTCCTTGGAGAGGTGGGCCTGGGAACCC\n-+\n-5544455,0545445FFFEEFFFFFFFFFEEBC;D6<5-?FFFFFFFFFF\n-@ERR030881.41234 HWI-BRUNOP16X_0001:2:1:14816:8065#0/1\n-CTCTCCTCTAACCCTCCAGGCCTTAGCTTGCCTCACATGTCAGGGCAGGT\n-+\n-55,34)4-53HHEHHGGGGG7DC?@GG;BGGEGGGGGGGGGGGGGGGGGA\n-@ERR030881.55301 HWI-BRUNOP16X_0001:2:1:7892:11256#0/1\n-CAAAAATGTAGCTGCCCTGACCTGGTCTCCCCTGACCCTTCCACGGGGCT\n-+\n-56624545442525554455FFECECGEDGFF8DF###############\n-@ERR030881.57346 HWI-BRUNOP16X_0001:2:1:20039:11573#0/1\n-GACAGATGATGTCCAAGCCCCTACATGCCCCAGACCCCAGGGCACGGCTG\n-+\n-##################################################\n-@ERR030881.57608 HWI-BRUNOP16X_0001:2:1:16788:11614#0/1\n-ATCTCGTAGTACATCACATAGTGACGCTGCATCTCTGACTTCTCACTGGC\n-+\n-5653445555HHHHHHHHHH9;@=@HHHHHHDHHHHHHHHHHHHHHHHDH\n-@ERR030881.58998 HWI-BRUNOP16X_0001:2:1:14252:11816#0/1\n-CACCATTTGACCCTGAGCCAG"..b':6601:197274#0/1\n-CGGCCCCCTGCTAATCCGACTTCTCGCCATCATCCTCCTGGTGGGTGTCA\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHFHHHH\n-@ERR030881.74446016 HWI-BRUNOP16X_0001:2:68:6384:197508#0/1\n-TGTGTCTTGTGCTAAACATTCCTTTCTCTCCGTGCCTCTGTCTCCCCTCT\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHFHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74446277 HWI-BRUNOP16X_0001:2:68:20062:197534#0/1\n-CAGCCCTCTCACCCTGGTACTGCATGCACGCAATGCTAGCTGCCCCTTTC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHEHHHGHIIHHHHHAHHHHHHHHHGH\n-@ERR030881.74446743 HWI-BRUNOP16X_0001:2:68:3752:197585#0/1\n-CTGGGACCCAGGCAGCTGCCACCTTGTCACCATGAGAGAATTTGGGGAGT\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG\n-@ERR030881.74446915 HWI-BRUNOP16X_0001:2:68:8353:197599#0/1\n-GGACTGTCCACCAGGTCCCGACGGGCAGGAATGCAGATGGGTACCTTTCC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHFHHHHHHHE\n-@ERR030881.74447547 HWI-BRUNOP16X_0001:2:68:9591:197654#0/1\n-GCCAGTGGTGGGCATGCGGCTGCGGAGCACGTCCTGAGCTGTGGGGACGT\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHBDDBB@9@AAHHGHHHHHGHHDHHH\n-@ERR030881.74449534 HWI-BRUNOP16X_0001:2:68:1488:197840#0/1\n-CTACTCCTTCCGCAGCAGGGAGGTGTGCAGAGCCGTGCTCAGCTTCCTCT\n-+\n-HHHHHHHHHHHHHHHHHHHHHHH8HAGFGGFHHHFGGHHHHHGHHHIHGH\n-@ERR030881.74453424 HWI-BRUNOP16X_0001:2:68:5325:198191#0/1\n-GTCCTGCCCTACCTCTCCCAAGAGCACCAGCAGCAGGTCTTGGGAGCCAT\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74454854 HWI-BRUNOP16X_0001:2:68:18716:198301#0/1\n-GCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTC\n-+\n-55555?>?>>5555444555444442=5<=55444C=6C>2555551544\n-@ERR030881.74455894 HWI-BRUNOP16X_0001:2:68:18831:198398#0/1\n-CTGGGACCTGCGGGAGGGCCGCCAGCTGCAGCAGCATGACTTCAGCTCCC\n-+\n-HHHHHHHHHHHHHHHHHGEHHHHHHHCHHHFHHHHHEFGDFHHHEHBFHH\n-@ERR030881.74457151 HWI-BRUNOP16X_0001:2:68:9093:198528#0/1\n-AAACAAAACATTTTCCTTTGGGTTTTTTTTTTTCTTTCTTTTTTCTCCGC\n-+\n-HHHHHHGGGHHHHHHHHHHHHHHHHHHHGGGGGBGGGBHHGGGGGGGHHH\n-@ERR030881.74458067 HWI-BRUNOP16X_0001:2:68:15716:198600#0/1\n-GTTCCAACCACCGCCGGGGAGGGAGAGGGCCCCTGTCCCTGCAGGGCCGC\n-+\n-ADAD?DEFBEHHHHHCCDGDHCEEHCGBGAHHHHHCDCGD5555424554\n-@ERR030881.74460390 HWI-BRUNOP16X_0001:2:68:15056:198815#0/1\n-CCTGGAACTGCCTGACCATAGTCTGATTCTGCAGGTCCCAGACCACAATG\n-+\n-?ACDC?DDGG=DDD>55554GGFFADDDA==<==>D=DAD5445544445\n-@ERR030881.74460430 HWI-BRUNOP16X_0001:2:68:19789:198814#0/1\n-CACAAATCCCGTTCAGCCTTTTGACGATCTCAGCCTGTTTGTGCATCTCG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74460883 HWI-BRUNOP16X_0001:2:68:19795:198864#0/1\n-CTGCCTGGCACGCACCCGGTGGCTGCACCATCCACACGCAAGACTGCAAC\n-+\n-HHHHHHHHHHHHHHHHHDHHHHHGHHFHHHHHHHHHHHFHHHFHGHFHHH\n-@ERR030881.74463349 HWI-BRUNOP16X_0001:2:68:7211:199081#0/1\n-CGGGGAGGTTGGGAGGGGGGACAGAGGGGAGACAGAGGCACGGAGAGAAA\n-+\n-HHHHHHHGEHHHHHHHGGGGEHGHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74463429 HWI-BRUNOP16X_0001:2:68:16435:199090#0/1\n-CGGGCTCCTCGCACCTACCCCAGCAACTCAAATTCACCACCTCGGACTCC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74466171 HWI-BRUNOP16X_0001:2:68:1844:199339#0/1\n-ATTTTTTTAAAGGTTTTTCTTGTATCTTTTTTTTTTTTTTTTTTTTTTTT\n-+\n-HHHHHHHGGHHHHGHHHGHC83=;><=@=<CCCCCCCCCCCCCCCCCCCC\n-@ERR030881.74466232 HWI-BRUNOP16X_0001:2:68:10444:199339#0/1\n-CCTGGGTCGCCCACCCTCACCCTGCTCCTCCCAGCTCAGCTAAGCTCGTC\n-+\n-HHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74466444 HWI-BRUNOP16X_0001:2:68:18815:199349#0/1\n-GTTTAGCACAAGACACAGCGGAGCTCGGGATTGGCTAAACTCCCATAGTA\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIH\n-@ERR030881.74468879 HWI-BRUNOP16X_0001:2:68:9428:199583#0/1\n-CACCAACCAGCCGCGGGCCGCGCAGCTGGTGGACAAGGACAGCACCTTCC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHGHH\n-@ERR030881.74470889 HWI-BRUNOP16X_0001:2:68:4971:199775#0/1\n-CAGAGCTTAGCGGGGGGCTGAGCTGGTGTCTTTGAACCTCTAGTCCCAGG\n-+\n-HHHHHHHHHHHHHHHCGGGHEHHFHHEHHHHHHHHHHHEHHHHHFHHHHH\n-@ERR030881.74471439 HWI-BRUNOP16X_0001:2:68:16981:199816#0/1\n-TGTGTGCCCCATTTCTCCATATAGTCTTCCTCAGGCAGGTCCTAGGTCCC\n-+\n-??DDDEDECC<=@><CCC@?<<<=@EGGGGG?GGGGCGCE>@@6=55554\n-@ERR030881.74471978 HWI-BRUNOP16X_0001:2:68:9605:199866#0/1\n-CCCAGGTCCTGCCCTACCTCTCCCAAGAGCACCAGCAGCAGGTCTTGGGA\n-+\n-HHHHHHHHHGHHHHHHHHGHHHHHHHHHHHHFHHHHHHHHHHGHHHHAHE\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a test-data/input2.fastq --- a/test-data/input2.fastq Thu Sep 07 17:55:18 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,200484 +0,0 @@\n-@ERR030881.107 HWI-BRUNOP16X_0001:2:1:13663:1096#0/2\n-CGGATTTCAGCTACTGCAAGCTCAGTACCACAGCCTCAAGCTCGAATGTG\n-+\n-HH;HHHHHGHHHHHHHHHHGHDHEHHHHHEHHHHBHHFHHHHHHHHHD0F\n-@ERR030881.311 HWI-BRUNOP16X_0001:2:1:18330:1130#0/2\n-GAGTGCGAGGGAAGTCAGGGGAGGATCGCGAGGGAAGCCAGGGGAGGATC\n-+\n-HHHHHBF8G>&4555GGGGGHHGGEHHHHHHHHH=HHHHHHHHHHHGB9H\n-@ERR030881.1487 HWI-BRUNOP16X_0001:2:1:4144:1420#0/2\n-AACCGGGGGACGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTT\n-+\n-@FEEH>==9=05544FGFGFHHHBHHHFHF>AAAAHHHHHHHEHHHHHHH\n-@ERR030881.9549 HWI-BRUNOP16X_0001:2:1:1453:3458#0/2\n-TCAGCATGCTTCTTAGGGCCCTGGAAACTGGGGAAATAGGTAGCCAGGTG\n-+\n-5515555/5515444FFHHHHHHHHHHHHHHHHHHHHHHHEHHHHGHH@H\n-@ERR030881.13497 HWI-BRUNOP16X_0001:2:1:16344:4145#0/2\n-GGCCAAGCAGGTCACCGCTCCCGAGCTGAACTCTATCATCCGACAGCAGC\n-+\n-HHHHFGHHHGFAFFFHHFHHHHH/HHHHGHHEHHEHGFHHDGF=AA=@@8\n-@ERR030881.14070 HWI-BRUNOP16X_0001:2:1:4377:4232#0/2\n-TGGAGTCCTTCATGCCCAGGTCTGGAACCCAGGTTCTGACCCCAGGGCCC\n-+\n-FDFFFEGGGGHHHHGHHHHH>AAA8GGGGGHHHGHHHHHHHHHHHGFHHH\n-@ERR030881.16375 HWI-BRUNOP16X_0001:2:1:2265:4573#0/2\n-GGCCAGCCGGGCTCCAGAGGGGTCAGGGCGCGACGAGAACCAACTCTTTA\n-+\n-FDFFBDFDDBAAADDGHGHHHHBHHHHHGHGHHHHHHHHHHHHHHHHHFH\n-@ERR030881.18437 HWI-BRUNOP16X_0001:2:1:13904:4828#0/2\n-GGGCTCTCCCTCTGTATCGCCTGGGGAGGCTGCTGAGGTGACTTTTTGGA\n-+\n-A?DDABFBFFHGHEHHHHHHHHHIHHDHCC55555BFFCD;:9=;=@=><\n-@ERR030881.18768 HWI-BRUNOP16X_0001:2:1:15563:4868#0/2\n-CACAGTAGGCGTTCTATAAATGTGTCACAAGAATGGCTTCCCTCAGGAAG\n-+\n-55444;@=@>HHHDHHHHHFFGHHHHHHHHHIHHHFH=HHBB?<D#####\n-@ERR030881.20718 HWI-BRUNOP16X_0001:2:1:12184:5115#0/2\n-GCCTGGGCAACATAGCGAAACCACATCTCTACAAAAAAATCCTCCAAAAT\n-+\n-HGIEHHHHGHF=@FF8A>>@HFHH=HHHHHHHIHHHGGGGH@@HHGGGEG\n-@ERR030881.22833 HWI-BRUNOP16X_0001:2:1:13089:5358#0/2\n-AGCCACTGCCTTTCTGCTCAGATGCTGGCACCTCCGCCCCCGGGGCTGCC\n-+\n-EHHHFF?GFDGFFB???DDAD<FC<55555FFGGG<?>>61/5444-555\n-@ERR030881.23643 HWI-BRUNOP16X_0001:2:1:7921:5452#0/2\n-CGAGCTGAACTCTATCATCCGACAGCAGCTCCAAGCCCACCAGCTGTCCC\n-+\n-HHHHHHHHHHHHHHHGHHHHGGHHHHHHHHHHHHHHHHHHHHHHHHDHHH\n-@ERR030881.28299 HWI-BRUNOP16X_0001:2:1:6428:5960#0/2\n-GGAGTCACAGGATTTGGAGGCAGGAGTGCTGGCGGGAAGGGCATTCAGGA\n-+\n-HHHHHHHFEH?=DDDHIFHHEHEDE?DAADH@FHHC'@CE##########\n-@ERR030881.28475 HWI-BRUNOP16X_0001:2:1:14780:5977#0/2\n-CTCGGAAGGCAAGGCACATCTTGTGGTAGAAAATTTCGTGCAAATTAGGA\n-+\n-HHHHHGGH=IADDADHHGHH444-4A?A?AGHGHHFGFG@/5544HDHEE\n-@ERR030881.29253 HWI-BRUNOP16X_0001:2:1:1570:6070#0/2\n-CTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTCCCATCTGACCCTCCA\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.30545 HWI-BRUNOP16X_0001:2:1:4103:6216#0/2\n-GTTTAAAGGTGATACTTATTCTCGGAAGGCAAGGCACATCTTGTGGGAGA\n-+\n-EF;GG4445544544FF@FFEHFHFFHGHH####################\n-@ERR030881.32582 HWI-BRUNOP16X_0001:2:1:12474:6471#0/2\n-GGGACAGGGAGGTTGGGAGGGGGGACAGAGGGGAGACAGAGGCACGGAGA\n-+\n-FF8FFBFFFFFDF@FCD>CFF@@F:HEHEHHHHBHHHHHF==<>5?DDA;\n-@ERR030881.33730 HWI-BRUNOP16X_0001:2:1:14154:6628#0/2\n-GTGAGGGTGGGCGACCCAGGATTCCCCCTCCCCTTCCCAAATAAAGATGA\n-+\n-BEFDB44(4411445DA?ADHHHHIFDDC>:::5@DDDC?HHHDEBFFB>\n-@ERR030881.35226 HWI-BRUNOP16X_0001:2:1:3903:6867#0/2\n-CAGAGCGTAAGAAATGGATCCATTGTTCCGAGAACGTGATCGCCCTCATC\n-+\n-HH@HHHFDHHHHHHHFHHHGHGHHHHHHHGGHHHHHFHHAHHHHHGHHGH\n-@ERR030881.38182 HWI-BRUNOP16X_0001:2:1:17495:7451#0/2\n-CCTCTCCCGAGCTGAACTCTATCATCCGACAGCAGCTCCAAGCCCACCAG\n-+\n-GG/GGHHHHHHHHHHHHHHHHHHHDHHHHHFDHHHHHH@HHEHHHHHHHH\n-@ERR030881.41234 HWI-BRUNOP16X_0001:2:1:14816:8065#0/2\n-GGCAGGTTGGGAGGGGGGACAGAGGGGAGACAGAGGCACGGAGAGAAAGG\n-+\n-FFGHH55,5514441>><<BHHEHFF?9F4FFFBFHHHHHHHHGHHFF4H\n-@ERR030881.55301 HWI-BRUNOP16X_0001:2:1:7892:11256#0/2\n-CTTCGCAAATTTGTCCCAGGGATGGATCGCCTGTGCTGCCTTCGCCCGCC\n-+\n-D@5AA4453451444GGGFDHH@GEA;DDD=:=+:D@DFDEDHHB#####\n-@ERR030881.57346 HWI-BRUNOP16X_0001:2:1:20039:11573#0/2\n-CCTGTCCAGAGTCTGAGGGGGGAGGCCAGGCCCTGCCTTGGGGTCTGAGG\n-+\n-##################################################\n-@ERR030881.57608 HWI-BRUNOP16X_0001:2:1:16788:11614#0/2\n-GGGGGGCGCCGCAGCTGCGCGGCCGCTCCCTCCTAGCCGGCCCTTGAGGG\n-+\n-HHHHHHHEGHIHHHHHHDHF@@<A?FFE@FGGGAG4====HHHHHHHEHB\n-@ERR030881.58998 HWI-BRUNOP16X_0001:2:1:14252:11816#0/2\n-CTGAATCCCTTGCCCAGAGGA"..b':6601:197274#0/2\n-CCGCTCCCGAGCTGAACTCTATCATCCGACAGCAGCTCCAAGCCCACCAG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGH\n-@ERR030881.74446016 HWI-BRUNOP16X_0001:2:68:6384:197508#0/2\n-GGCCCTGCCCTTGACCCCACTACCCGTGGGGCTGCAGCCGCCTTCGCTGC\n-+\n-HHHHHHHHHHHHHHHHHHIHHGHHH>A??@FHHHFHHFHDHH=HHB>4FF\n-@ERR030881.74446277 HWI-BRUNOP16X_0001:2:68:20062:197534#0/2\n-CTTTATTTGGGAAGGGGAGGGGGAATCCTGGGTCGCCCACCCTCACCCTG\n-+\n-HHHHHHHGGHHHHHHHHFHGGGGGHHHHHHHGHHHHFHHEH9BHEDD###\n-@ERR030881.74446743 HWI-BRUNOP16X_0001:2:68:3752:197585#0/2\n-CGGCCGGCTGCATCCCACACCAGCCTGAGCCCCAGACGGTCAGTCAGTGC\n-+\n-HHHHHHHHHHHHIHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHH\n-@ERR030881.74446915 HWI-BRUNOP16X_0001:2:68:8353:197599#0/2\n-CGAGGGGTCCAGAGTGGAGAGAGCCCCGAGCAGGAGTGCATCTCCCTCGC\n-+\n-HHHHHHHFHHHHHHHFHHHHHHHHHHHHHHHGHHHHHHHHHHIHFHHHGH\n-@ERR030881.74447547 HWI-BRUNOP16X_0001:2:68:9591:197654#0/2\n-GGCTGCAGATTCCATTCAGCAGGCCCGAGAGCAAGCACCACGCTAGCCTG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHG\n-@ERR030881.74449534 HWI-BRUNOP16X_0001:2:68:1488:197840#0/2\n-CAAGACTGCAACTTCAGATGCTCCGCACGCTGGAGATGCTGGACAGGGGC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHFFHHHHHHHEHEHE\n-@ERR030881.74453424 HWI-BRUNOP16X_0001:2:68:5325:198191#0/2\n-CTTCCTTGGAGAGGTGGGCCTGGGAACCCAGCGCGGACAGCGAGAGGAGG\n-+\n-HHGHHHHHHHHHHHHHHHHHHGHHGHHHHHHHHHHHHHHHHHHHEHHHHG\n-@ERR030881.74454854 HWI-BRUNOP16X_0001:2:68:18716:198301#0/2\n-GGAATGTTTAGCACAAGACACAGCGGAGCTCGGGATTGGCTAAACTCCCA\n-+\n-HF@GHD?>DA=<>;=444444245444445>>@>;BECBF@?A<>@AAA8\n-@ERR030881.74455894 HWI-BRUNOP16X_0001:2:68:18831:198398#0/2\n-GGACTGAGGACGACTCCTTGGACTGGAAAATGCTGGCCCCGTACGGCGTC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHDHHHHHHIH\n-@ERR030881.74457151 HWI-BRUNOP16X_0001:2:68:9093:198528#0/2\n-GGAACCTTCTCCGGATTGGGTTCATGAGCATTTTTGTGGGTGTGTATGTG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHFH\n-@ERR030881.74458067 HWI-BRUNOP16X_0001:2:68:15716:198600#0/2\n-GGCCGTCTTTGACCTGCTCCTGGCTGTTGGCATTGCTGCCTACCCTGGCA\n-+\n-55555<@@@@===<655244A??DAC:C?#####################\n-@ERR030881.74460390 HWI-BRUNOP16X_0001:2:68:15056:198815#0/2\n-GGTGAGGCCAGCACCTTGTCCATTTGGGACCTGGCGGCGCCCACCCCCCG\n-+\n-5-5449=;==BFFBFDBFDDC>?>>D?DDDHHHHHBFFC@44244<<<<<\n-@ERR030881.74460430 HWI-BRUNOP16X_0001:2:68:19789:198814#0/2\n-ATGATGTTTCCACAAAGCAGGCATTCGGGCTCCTCGCACCTACCCCAGCA\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74460883 HWI-BRUNOP16X_0001:2:68:19795:198864#0/2\n-TGCTGCGGGTGTCTCCGGCTGGGCATGCGGGGGCCCGGGGACTGCCTGGC\n-+\n-HHHHHHHHHHHHGHHHHFDEBDDBB5552*DDBBFHHHHH@FDF######\n-@ERR030881.74463349 HWI-BRUNOP16X_0001:2:68:7211:199081#0/2\n-CTGGTCTCCCATCTGACCCTCCAGGCCTTAGCTTGCCTCACATGTCAGGG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHFH\n-@ERR030881.74463429 HWI-BRUNOP16X_0001:2:68:16435:199090#0/2\n-GGACCTGGGCACAAATCCCGTTCAGCCTTTTGACGATCTCAGCCTGTTTG\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\n-@ERR030881.74466171 HWI-BRUNOP16X_0001:2:68:1844:199339#0/2\n-GGTGGGGGTCGTGGAGTGGGGGAGGGAGGCCAGCCGGGCTCCAGAGGGGT\n-+\n-HHHHHHGGGHGBGEFHHHFHHG9GGC;HHEHHHCHFG@FFAA;=9DD;C7\n-@ERR030881.74466232 HWI-BRUNOP16X_0001:2:68:10444:199339#0/2\n-CCGTTTTGAACATGTGTAACCGACAGTCTGCCTGGGCCACAGCCCTCTCA\n-+\n-HHHHHHHHHHHHHHHHHHHHHHHHIHHHHHGHDHGHHHBHCFFFFHHHHH\n-@ERR030881.74466444 HWI-BRUNOP16X_0001:2:68:18815:199349#0/2\n-GGAAGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCT\n-+\n-HHHHIHIHHHHHGHHHHHHHFHDHFGHHHHHEHEHHHHHHHHHHHHGHHH\n-@ERR030881.74468879 HWI-BRUNOP16X_0001:2:68:9428:199583#0/2\n-GGAGGCTGAAGTGCTGGACAGCCACGTAGGCCATGCCGAGGTAGGCAGCA\n-+\n-HFHHHHHHHHHHIHGHHHHHHHHHHHHHHHHHEHHHHGGHH?FHHHHHGH\n-@ERR030881.74470889 HWI-BRUNOP16X_0001:2:68:4971:199775#0/2\n-GACATATTTGAGAGACACTGGGGAGACAGAATCGACCTGACCTTGCTGAC\n-+\n-HHHHHHHHHHHHHHHHHHHHHHH@HHHEHHHFHHHHHGHAHFBEHHGFBG\n-@ERR030881.74471439 HWI-BRUNOP16X_0001:2:68:16981:199816#0/2\n-GTGACACTGCATTGCTGCTGCCAGCACCCCTTGTTAGGGTTTGTAATTGC\n-+\n-F8HHHFGGG8DC>A>ADD1?##############################\n-@ERR030881.74471978 HWI-BRUNOP16X_0001:2:68:9605:199866#0/2\n-CTTGTCTTCCTTGGAGAGGTGGGCCTGGGAACCCAGCGCGGACAGCGAGA\n-+\n-HHHHHHIHHHHHDHHGHHHGHHHHHHHHHHHHFGHHHHFHHDHHHCHHHH\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/AHCYL1-RAD51C_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/AHCYL1-RAD51C_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,52 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:7:1277:1620/1 +GTTTATTTATACTTTAAGGTAACAAGTCCACTTGT ++PATHBIO-SOLEXA2_30LEJAAXX:7:7:1277:1620/1 +aaaaaaXaaaabaZaaa\aaa[aa__Zaaaaaa\a +@PATHBIO-SOLEXA2_30LEJAAXX:7:89:1051:1091/1 +ACCGGGGTCGGGGAGGAGCTGAAGCAGGCCAAGGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:89:1051:1091/1 +bbbaaaaWababbbbaaaabbaaaaaaa_`_aaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:940:1753/1 +CTGGGTTATAATTCTTCCTCTGGGTCTCGTGACCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:940:1753/1 +bbbbabbbbbabbbbbbbbb`VQVaaaaX`U_]_] +@PATHBIO-SOLEXA2_30LEJAAXX:7:19:340:1535/1 +GTTTGCAATGAACATGCAGAAGTAACAACAGTATC ++PATHBIO-SOLEXA2_30LEJAAXX:7:19:340:1535/1 +bbbaaaaaaaaaaaaaaaaaaaaaaaaaa^^_``a +@PATHBIO-SOLEXA2_30LEJAAXX:7:8:639:991/1 +CTGGGTTATAATTCTTCCTCTGGGTCTCGTGACCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:8:639:991/1 +babaaZabaaaabbbaaa`S_a\aaaa`[`aa\aa +@PATHBIO-SOLEXA2_30LEJAAXX:7:56:1468:1938/1 +CTGGGTTATAATTCTTCCTCTGGGTCTCGTGACCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:56:1468:1938/1 +bbWa\a]S]aaaaaaW\[^aaXKHZUXZEKMZ_U] +@PATHBIO-SOLEXA2_30LEJAAXX:7:65:500:1793/1 +CGCTGGCCGGGCCGGCCGGGGAATGTCGATGCCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:65:500:1793/1 +bbbabbbaaaaaaaaaaaaa^\^^a`_^_^[[[^U +@PATHBIO-SOLEXA2_30LEJAAXX:7:87:688:1556/1 +GCCGGGAGCAGCCAAAACCTGCTAAGTCTCAGAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:87:688:1556/1 +aaaOaaaWaaaaaa^aaaaaaa\\Zaabaaab\aa +@PATHBIO-SOLEXA2_30LEJAAXX:7:46:1482:684/1 +TACACTTTGAGATTTGTTTCTGGGTTATAATTCTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:46:1482:684/1 +aaaabaaaaZ^aaabaaabaaXSSaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:89:237:1128/1 +CGGGGTCGGGGAGGAGCTGAAGCAGGCCAAGGAGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:89:237:1128/1 +baaWaaaaaaaaaaaaaaa^aabaaaaaaaaaaa\ +@PATHBIO-SOLEXA2_30LEJAAXX:7:32:573:692/1 +GGAATGTCGATGCCTGACGCGATGCCGCTGCCCGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:32:573:692/1 +bbaaaaaabbbbaaaaaaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:25:1383:1407/1 +GGCGGGGAATGTCGATGCCTGACGCGATGCCGCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:25:1383:1407/1 +babaaaaaabaaaaaaaaaaa_`_aa\a[Q^aMEX +@PATHBIO-SOLEXA2_30LEJAAXX:7:90:1243:1836/1 +TTCTTCCTCTGGGTCTCGTGACCGTTTCCGGGTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:90:1243:1836/1 +aaaababbbaaaaaaaa^aaaaaaaaaaaWQQ[SQ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/AHCYL1-RAD51C_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/AHCYL1-RAD51C_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,52 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:7:1277:1620/2 +GTACTCCTTCATGGCCACCGTCACCAAGGCGCCCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:7:1277:1620/2 +abaaaabaL^bbaaaaaaa^\aaaa^Q^[aWa\aU +@PATHBIO-SOLEXA2_30LEJAAXX:7:89:1051:1091/2 +GGGTGCTCAAGGAACCTTATGTTTGCAATGAACAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:89:1051:1091/2 +babbbbbbaaa^aaaaa`]`aaaaaaaaa\a_]_X +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:940:1753/2 +GTCGATGCCTGACGCGATGCCGCTGCCCGGGGTCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:940:1753/2 +abbbbaaaaaaaaaaaaaaaaaaa_]]aaaa_XZX +@PATHBIO-SOLEXA2_30LEJAAXX:7:19:340:1535/2 +CGGGGTCGGGGAGGAGCTGAAGCAGGCCAAGGAGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:19:340:1535/2 +bbbabaaaaaaaaaaabaaaaaaaaaa^^^_^[ZU +@PATHBIO-SOLEXA2_30LEJAAXX:7:8:639:991/2 +CGATGCCTGACGCGATGCCGCTGCCCGGGGTCGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:8:639:991/2 +ab_J`bbbaaabbaaaaaaaaaaaaaabaaaaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:56:1468:1938/2 +GAATGTCGATGCCTGACGCGATGCCGCTGCCCGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:56:1468:1938/2 +aa`X`aaaaaaabaZa^J^aaaaaa^\^UKOKXMK +@PATHBIO-SOLEXA2_30LEJAAXX:7:65:500:1793/2 +GTTCGGGTGCTCAAGGAACCTTCTGTTTGCAATGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:65:500:1793/2 +bbbaaaaaaaaaaaaaaaaaaaaaaaaaa_``__Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:87:688:1556/2 +CTCGTGACCGTTTCCGGGTGCTCAAGGAACCTTCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:87:688:1556/2 +aaaaaaaabaabaaa\baaaaaa[XXaaaaaabaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:46:1482:684/2 +GGAGGGGAGGAGCTGAAGCAGGCCAAGGAGATCGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:46:1482:684/2 +baaaaaaabaaaa^aaaa\aaaZZaaabaaaUMXR +@PATHBIO-SOLEXA2_30LEJAAXX:7:89:237:1128/2 +GTACACTTTGAGATTTGTTTCTGGGTTATAATTCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:89:237:1128/2 +aaabaaaaaaaaaaaaaabaaa^M\aaZaabaaa[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:32:573:692/2 +CTCTGGGTCTCGTGACCGTTTCCGGGTGCTCAAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:32:573:692/2 +aaaabaaaaaaaaaaaaaaaaaaaaaaaaa[^\aZ +@PATHBIO-SOLEXA2_30LEJAAXX:7:25:1383:1407/2 +CCTCTGGGTCTCGTGACCGTTTCCGGGTGCTCAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:25:1383:1407/2 +ababaaaaba^aaaba^aaaaa]SUZZ]S]^\VUX +@PATHBIO-SOLEXA2_30LEJAAXX:7:90:1243:1836/2 +GGGGAATGTCGATGCCTGACGCGATGCCGCTGCCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:90:1243:1836/2 +abaaaaaaaaaaaaaaaaa[]_aaaaaaaaaPXXR |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/ARFGEF2-SULF2_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/ARFGEF2-SULF2_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,568 @@\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:23:64/1\n+GTCCCGCCCTGCTCCATGATGCGCCGGGTCTTGTT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:23:64/1\n+aaaaaaaab\\\\a\\aaaaa^aaaaaaWabaaaaaa^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:53:140:335/1\n+GCAGTTCTCATTGTTGGTGTAGGTGTTGTGGTTGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:53:140:335/1\n+aa^aaabaaaaaaaaabaa[V^aZbaaXa^^a_M_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:34:1433:1923/1\n+GGAGCGTGAGGGGCAGCACATGGGTGTGGTCACGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:34:1433:1923/1\n+bbababbaaaabaaaaaaaaaaaaaaaUa_][aaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:72:1296:386/1\n+CAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:72:1296:386/1\n+babaaaaaaaabbaaaaW`_Xaaaaaaaaaa\\aL^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:44:1403:1658/1\n+GGGCCATGCAGGAGAGCCAGACCAAGAGCATGTTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:1403:1658/1\n+abbbaaaababaabaaaaaabbaaa\\aa^aaaa__\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:97:215:106/1\n+GCCTAGCTCGCCATCTCGCTCACGCCGCCCGCCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:97:215:106/1\n+aaaab^bbaaabbbbaaaaaaaaaa`Z_a_\\^aaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:1199:1607/1\n+CGGGCCCTGGTGAAGATCCTAGCCGACAAGGAGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:1199:1607/1\n+aaaaabbaa[K[abaaaaaa^S^aaaaaaaaaaa`\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:1383:1396/1\n+GGGCCATGCAGGAGAGCCAGACCAAGACCATGTTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:1383:1396/1\n+bbabaaaaaaaaaa^aaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:73:79:1456/1\n+AGGAGGGCGAGGAGCAGTTCTCATTGTTGGTGTAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:73:79:1456/1\n+aabaabaaaaaaaaaaaaaabaaaaaaaaaa^`[L\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:23:1773:1946/1\n+AGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:23:1773:1946/1\n+aabaaaaababbbabbaaaaaaabaaabaaaabaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:241:582/1\n+CATTGTTGGTGTAGGTGTTGTGGTTGTGGACGTAT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:241:582/1\n+a\\aaaaaaaaaUQ^_S]aaUaM[MREKQMKPRREK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:965:1429/1\n+CAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:965:1429/1\n+babaabaababaaabaabaaa^aaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:404:1991/1\n+GCAGTTCTCATTGTTGGTGTAGGTGTTGTGGTTGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:404:1991/1\n+aZEUaaa^a^aaaa^^aZVVV^[aWaaaaZI^aGE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:289:1577/1\n+GCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:289:1577/1\n+bbaaaaaaaaaaaaaaaaa`__aaaa`_]]_aa^[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:34:1304:1646/1\n+GTGCCTGCCAGGAGGGCGAGGAGCAGTTCTCATTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:34:1304:1646/1\n+aaaaaaaaaaaaaaaaaaaa`_`aaaaaaa^^[aa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:7:1465:1275/1\n+GCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:7:1465:1275/1\n+abaaaZ\\aaaaabaaaa\\^aaaaaaa^aa\\aaaa_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:86:1572:2023/1\n+GTACTTGCCGGTGAGGATGGAGGAGCGTGAGGGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:86:1572:2023/1\n+aaaaaabaaaaaaaaaaa^aa[a^aaabaaaaa^O\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:16:679:1555/1\n+TTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:16:679:1555/1\n+aaaLaZabbaaaaZaaaaaLaWLaaa^[J^Zaa^^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:915:1083/1\n+TGCCGGTGAGGATGGAGGAGCGTGAGGGGCAGCAC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:915:1083/1\n+babbbbaabaa^aaaUaaa^XVS[Q\\aaZRHUKXU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:39:1584:573/1\n+CGCGGCCGGTGCCGGCCGGGACGCCGGGCCCGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:39:1584:573/1\n+baabbaaaaaaabaaaaaa``]aZZ^a`X]a\\VQ^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:70:378:1964/1\n+GCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:70:378:1964/1\n+baaaaab`W`aaaaa^Q^aaaaaaaXMXZOXZ_a_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:129:1017/1\n+GTGTAGGTGTTGTGGTTGTGGACGTACTTGCCGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:129:1017/1\n+baaababaaabbaaaa`X`U___ZXOUXXEMREMS\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:12:365:706/1\n+CCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:12:365:706/1\n+aabbaaaaaababaaaaWabbaaaSS`aaaaaWaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:83:888:907/1\n+GCCGGGTCTTGTTCATCACCTGCATGGAACCGAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:83:888:907/1\n+aabbabbaaaa^aab`]_aaa\\aa`[Z\\aaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:14:649:1237/1\n+GGTGTAGGTGTTGTGGTTGTGGACGTACTTTCCGG\n++PATHBIO-SOLEXA2_'..b'AAXX:7:44:170:547/1\n+CGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCAT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:170:547/1\n+aabaaaabbaaa^aaUK[baaaWaaa^a^aaSMEX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:31:327:927/1\n+GTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:31:327:927/1\n+babaaaaabbaaaaaaaa][_aaaaaa__`aaaa^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:11:670:1627/1\n+GTGGTTGTGGACGTACTTGCCGGTGAGGATGGGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:11:670:1627/1\n+bbbbbbaaaaaa]\\\\^`^ZZ^XPMUEXZOX]UEXZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:81:159:597/1\n+TGCGTCCCGCCCTGCTCCATGATGCGCCGGGTCTT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:81:159:597/1\n+abaaaabaaaa[EKbaa`]`[_aXaa\\XEE_aaaV\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:70:1099:1499/1\n+AGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:70:1099:1499/1\n+aabaaaaaaaaa\\aaaaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:42:354:538/1\n+TGTGGTTGTGGACGTACTTGCCGGTGAGGATGGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:42:354:538/1\n+aaaaabaa[Q[a\\Z^\\aaZUaaa\\aUUEUS]aV[[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:51:460:769/1\n+CTCATTGTTGGTGTAGGTGTTGTGGTTGTTGACGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:51:460:769/1\n+bbaaabaWaa\\aaaaaZaaa`SJMZaUEUJKEOGO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:60:609:90/1\n+GTGAGGGGCAGCACATGGGTGTGGTCACGAAGGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:60:609:90/1\n+aOaaaabaaaaaaa^ababaaaaaaaaaaaaZaaX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:9:542:343/1\n+CGTACTTGCCGGTGAGGATGGAGGAGCGTGAGGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:9:542:343/1\n+aaaaaabbaaaaaaaa^aaaaaabbaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:26:1767:531/1\n+GCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:26:1767:531/1\n+bbbaaabaaaaababaa_U\\^[^aaa\\__aaa[XX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:20:1032:2010/1\n+GCGAGGAGCAGTTCTCATTGTTGGTGTAGGTGTTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:20:1032:2010/1\n+bbaaaaaaaaaaaabaaaaaaaXX]aXRR[aa^_S\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:426:623/1\n+GCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:426:623/1\n+baaaaabbbbaaabaaaaaaaaaaaaaaa`__aaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:43:525:1541/1\n+TGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:43:525:1541/1\n+aaabbaaaaabaaaaaaaaaaaaaaaaa`]`aaa\\\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:100:373:464/1\n+CTTGCCGGTGAGGATGGAGGAGCGTGAGGGGCAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:100:373:464/1\n+aba^aaaaaaaaaaaaa[aaaaa___a[X^_[Z[a\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:56:1266:1813/1\n+GGGTGAGGAGCAGTTCTCATTGTTGGTGTAGGTGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:56:1266:1813/1\n+aaaaaaaaaabaUaaa_ZZa^VVaZQREZUKEXaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:752:1980/1\n+GGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:752:1980/1\n+ba\\aaaaabaZaaab_]Ua^Xaa\\a[JX[Xaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:592:1334/1\n+CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:592:1334/1\n+aaaaaaaZabaaaaaaJaabaaaaaaa^S[\\ZU\\_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:638:809/1\n+GGCGTACTTGCCGGTGAGGATGGAGGAGCGTGAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:638:809/1\n+a\\aaLaaaaaaaaaZ^aaabaaa]_ZW\\ZVV[W[[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:66:513:1615/1\n+CCGGGGCCCTGGAGAAGATCCTAGCCGACAAGGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:66:513:1615/1\n+aaaaaaaa^aaaaaaaa^aaa\\aaZa^QZaaa_]`\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:302:1352/1\n+GAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:302:1352/1\n+aaaaaaabbbabaaaaaZaaXaaaaa^aaaaaaa[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:45:943:526/1\n+GTGAGGGCCAGCACATGGGTGTGGTTACGAAGGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:45:943:526/1\n+aLWZWa[EKaba^WaaaaWUSS_\\KMEZaVVJJZ[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:63:849:221/1\n+GTGGTTGTGGACGTACTTGCCGGTGAGGATGGAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:63:849:221/1\n+bbbaaabaaaaaaaaaaaaa^Z^aZKRUR[UXERU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:21:471:627/1\n+CTCGTGCTGTGCCTGCCAGGAGGGCGAGGAGCAGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:21:471:627/1\n+aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_Z[aa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:8:216:1709/1\n+TGTGGACGTACTTGCCGGTGAGGATGGAGGAGCGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:8:216:1709/1\n+baaaaaaaaaaa```aa_][EXUUXXUU[SU[_[S\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:848:276/1\n+GCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:848:276/1\n+aaaaaaWWaUa^aa\\a\\aaa]X`aZRR]XV[ZJRE\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/ARFGEF2-SULF2_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/ARFGEF2-SULF2_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,568 @@\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:23:64/2\n+GAAGATCCTAGCCGACAAGGAGGGGAAGCGGCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:23:64/2\n+aaaaabbaaaaaa^aaaaaaZaaWL\\a^aaaaa\\X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:53:140:335/2\n+GAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:53:140:335/2\n+aaaaaaababaaaaa[H^aaUaaaUMXaaaaOKRX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:34:1433:1923/2\n+GCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:34:1433:1923/2\n+aaaaaaaaaaaabbaabbbbaaUaaa^LaaZaa^X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:72:1296:386/2\n+GTGCCTGCCAGGAGGGCGAGGAGCAGTTCTCATTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:72:1296:386/2\n+aWaaaabaaaaaaaaXV^aaaaaaaaaaaa__`aU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:44:1403:1658/2\n+CAGCACATGGGTGTGGTCACGAAGGCGTTGATGAA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:1403:1658/2\n+abbaaaaa\\aaaaaaaba^[^^baaaaaaaUZZVU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:97:215:106/2\n+GCTGGGTCTTGTTCATCACCTGCATGGAACCGAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:97:215:106/2\n+bbaaa^aabaa\\a_M`XRXaaaXP[aaUHPaa_XP\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:1199:1607/2\n+TGTGGACGTACTTGCCGGTGAGGATGGAGGAGCGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:1199:1607/2\n+baaaaaaaaaaaaaaaaaaaZa\\WaaaaaZV[\\^R\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:1383:1396/2\n+GGGGCAGCACATGGGTGTGGTCACGAAGGCGTTGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:1383:1396/2\n+aa\\abaaaaaaaaaaaaaaaa^aaaaaaaaaaaaK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:73:79:1456/2\n+GGAGGTGAAGCGGCCCCAGCACTCCCCGCTGCGCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:73:79:1456/2\n+ababaab^aaaaaabbaWaa\\aaaa`S_aa^aa`H\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:23:1773:1946/2\n+GGAGGAGCGTGAGGGGCAGCACATGGGTGTGGTCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:23:1773:1946/2\n+aaaaaaaaaaaaaWaaaaaa^WWaaaaLaaWaL\\Z\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:241:582/2\n+GAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:241:582/2\n+HXabaaaaa]]_]aXE[aaUaaUKUa^U[XMX[UX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:965:1429/2\n+CTTGCCGGTGAGGATGGAGGAGCGTGAGGGGCAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:965:1429/2\n+aaabaaaaaa\\aaaaaUXUaaaaaaaW_Z]aaaXE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:404:1991/2\n+CGACAAGGAGGTGAAGCGGCCCCAGCACTCCCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:404:1991/2\n+baZU_Uaaab]W[aa^^I\\aaaaaL[H[EUa_PE[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:289:1577/2\n+GTGAGGGGCAGCACATGGGTGTGGTCACGAAGGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:289:1577/2\n+bbaaaaabaaaabaaaaaaaaaaaa^[[^UUX[_U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:34:1304:1646/2\n+GCTGCGCAGGGCCTCCCAGGTGGCGCTCGGTGGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:34:1304:1646/2\n+bbbbbbaaaaaaaaaaaaa^[Zaaaaaaa^V\\a_P\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:7:1465:1275/2\n+GCGAGGAGCAGTTCTCATTGTTGGTGTAGGTGTTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:7:1465:1275/2\n+aaaaabaaaaaaaW\\aaaa^aa\\aaa^[[]aO^[G\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:86:1572:2023/2\n+GTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:86:1572:2023/2\n+aaaaababaaaaa^a_S]\\aaaaba\\[^[aaURXX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:16:679:1555/2\n+AAGGCGTTGATGAAGTGCGTCCCGACCTGCTCCAT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:16:679:1555/2\n+aaabbaaaaaaaaaaaaaaaaXEKEXaVQUEOUUE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:915:1083/2\n+GTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:915:1083/2\n+bbabaaaabbaaaaaaaa\\aaaaaaa^\\^^ZOZUR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:39:1584:573/2\n+CGTTGATGAAGTGCGTCCCGCCCTGCTCCATGATG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:39:1584:573/2\n+abaababaaabaaaabbaaaaaaaVQ\\a^Q[X[XX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:70:378:1964/2\n+GGCGAGGAGCAGTTCTCATTGTTGGTGTAGGTGTT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:70:378:1964/2\n+bba`[`_U_aaaaaab_Z^aaaaaa_]XUKX]Z_U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:129:1017/2\n+AGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:129:1017/2\n+abaabbaaaaaaaaaaaaaaaaaaaZH[^____aX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:12:365:706/2\n+CTCTCGTGCTGTGCCTGCCAGGAGGGCGAGGAGCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:12:365:706/2\n+bbaabaa^aa\\aaaabaaa^aXEUaa\\_S`[[^[E\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:83:888:907/2\n+GGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:83:888:907/2\n+abaaaaaaa[SS[__aROX`aUaZaXEPQQMRXXG\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:14:649:1237/2\n+AGAAGATCCTAGCCGACAAGGAGGGGAAGCCGCCC\n++PATHBIO-SOLEXA2_'..b'AAXX:7:44:170:547/2\n+GGTCACGAAGGCGTTGATGAAGTGCGTCCCGCCCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:170:547/2\n+aaaaaaaaaaaaaa^a\\aaaaWa[]]Zaaaaaa[M\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:31:327:927/2\n+TGAGGATGGAGGAGCGTGAGGGGCAGCACATGGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:31:327:927/2\n+bbaaabbaaabbbaaabaaaaaa]]`aaaaaaaaK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:11:670:1627/2\n+GCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:11:670:1627/2\n+baaaaabaaaaaaaabaaaaaaaa^S^aaa\\V^aX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:81:159:597/2\n+CGCCGCCCGCCCCCGGGGCCGTCAGCCCCCCCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:81:159:597/2\n+babaWaa_J_aaJa^aaaaZEEUXX[V\\aa^U[HK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:70:1099:1499/2\n+GTGAGGGGCAGCACATGGGTGTGGTCACGAAGGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:70:1099:1499/2\n+aaaaaaaaaabbbabaaaaaaaaaa[[Q[ZaaaUR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:42:354:538/2\n+GTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:42:354:538/2\n+aaa^abba^baaaaaaZaaaaaaaaaaaaaaaXa[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:51:460:769/2\n+GGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:51:460:769/2\n+aaWbaaaaa^aaaaO\\aLaaab\\LZXHUaaUEE[[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:60:609:90/2\n+CCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:60:609:90/2\n+baaaabaWaaaa^aaaZaaba^aa^aaaaaaaaaU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:9:542:343/2\n+GCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:9:542:343/2\n+aaaaabbb\\aZabaaaaaaaabZaaaaaaaaaa[X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:26:1767:531/2\n+GGGGCAGCACATGGGTGTGGTCACGAAGGCGTTGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:26:1767:531/2\n+aaaaaabbaaaaabaaaaaaaaaa[V^aa\\aXa]K\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:20:1032:2010/2\n+GGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:20:1032:2010/2\n+aaaaaaaaabaaaaaa[HSHaaXE[XSaZZUEOXR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:426:623/2\n+GGAGCGTGAGGGGCAGCACATGGGTGTGGTCACGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:426:623/2\n+baaaabababbaaaaaaaaabaaaaa^aaaaaa^M\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:43:525:1541/2\n+CCCTGCTCAATGATGCGCCGGGTCTTGTTCATCAC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:43:525:1541/2\n+bbababbaaaaaaaaaaaaaaaaaaaXaaaaa`]X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:100:373:464/2\n+CCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:100:373:464/2\n+babaaaaaaabbaaaaaabaaa\\aaaa`W_aaaaZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:56:1266:1813/2\n+GTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:56:1266:1813/2\n+aaa\\\\aaaaa]`[a^K^aaWaaRUOa\\aaaXMKZU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:752:1980/2\n+GCCGGGTCTTGTTCATCACCTGCATGGAACCGAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:752:1980/2\n+aa\\\\UaaaaLaaa^V^aabaaa^[^XV^]`_[[[P\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:592:1334/2\n+GTCTTGCTCTGTCATCAGGATGGAGTGCAGTGGCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:592:1334/2\n+abaaaaaaaaaaaaaaaaUEXaZa\\UK[`X`aaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:638:809/2\n+CCCGGGCCCTGGAGAAGAGCCTAGCCGACAAGGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:638:809/2\n+abbbaaabaaaaabaabaLaaaaaaaaaaaa^aaX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:66:513:1615/2\n+GCGGACGTACTTGCCGGTGAGGATGGAGGAGCGTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:66:513:1615/2\n+aL^aaaaaaaaaaLaaaZ\\W^aaa^baa]W[XaJR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:302:1352/2\n+CAGGTGTTGTGGTTGTGGACGTACTTGCCGGTGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:302:1352/2\n+a\\aa\\aabaa^aaaa_WX][Q_ZOR^JH[VVHHPM\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:45:943:526/2\n+GGCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:45:943:526/2\n+aaLaWXaaaaa^aa^aaa^aaXEXaaaaa^a^aWE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:63:849:221/2\n+TGAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:63:849:221/2\n+bbaaaababaaaaaaaaaaaa``^^^aaaaaa`_X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:21:471:627/2\n+CCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:21:471:627/2\n+bbbaaaaaabbaaaaaaaaa^V^aaaaaaaaaaaU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:8:216:1709/2\n+CGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:8:216:1709/2\n+baaaabbbaaaabaaa^S^X]aa\\[^^V[^_[E[E\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:848:276/2\n+CGGTGTGGTCACGAAGGCGTTGATGTAGTGCGTCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:848:276/2\n+aaW^baaabaa^ZaaZa^QU^EEKGMUKEOEMOM[\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/BC035340-MCF2L_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/BC035340-MCF2L_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:73:483:1179/1 +CCTGGATGTCGGCAGCACAGAGCGGGACGATGTCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:73:483:1179/1 +bbbbaaaaaaaaaaaaaaaaaaaaaaaaa\aa\aa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/BC035340-MCF2L_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/BC035340-MCF2L_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:73:483:1179/2 +GCCTCATGTTTGACTGTTGGAGATTTATCCTGTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:73:483:1179/2 +aaababaabaaabaaaabaaaaaabbaaaaa^aU[ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/BCAS4-BCAS3_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/BCAS4-BCAS3_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,964 @@\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:57:1302:766/1\n+TGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:57:1302:766/1\n+aabbbaaa\\aaaabaaaaaaaaaaaaaaaaaa_UX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:32:41:790/1\n+CCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:32:41:790/1\n+aaaWaaaabaab^aaaaaaaabaaaaaaa^H^aZa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:37:1377:1073/1\n+GCTCCATGGAGGACATGTGCCGCAGCCCGAAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:37:1377:1073/1\n+ababbaaabaaaaabaZaaaaaaZXXXX^^\\a^[^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:57:946:2022/1\n+CCCGCACACCTCCAGCAGGGTCACGCTCCTGTCAA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:57:946:2022/1\n+bbbabbabbaababaabaaaabaaaaaaaaaaUXZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:64:290:441/1\n+CGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:64:290:441/1\n+baaabbbbbabbaaabbbbaaaaaaaaaaZaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:76:1184:1673/1\n+ATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:76:1184:1673/1\n+aaaaaaabaaUaaabababaaaaaaLa^baaZHSS\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:254:1175/1\n+CCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:254:1175/1\n+aaaa[H^aa\\abb`]`aaaaa\\\\_Q_aaUK[a^S^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:52:1132:327/1\n+CCCCGGAGGCCCTCCTCCGTGTGCTCCATGGAGGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:52:1132:327/1\n+babbbaaabaaaabbaaaaaXRUaaa_^__[^^aZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:221:1785/1\n+GCGTCGGCAAGTCGCTCCCGGAGGCCCTCCTCCGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:221:1785/1\n+abbaaaaaaaaWaaaaaaaZa^aaa_ZZ_a^aaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:309:789/1\n+AGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:309:789/1\n+aaaaaaaaa^baaaaaaZW^aaaaaZaaaaaaLa]\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:1658:1977/1\n+CGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:1658:1977/1\n+aabaaaaaaaa\\^aaaaaZUZaaa]]Xaa[H^aLa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:1326:1906/1\n+CGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:1326:1906/1\n+abbaaaaaaaaaaaaa^baa\\aaaaabaaaLaUaL\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:38:270:183/1\n+CCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:38:270:183/1\n+abbababaaabbbbbaa^aaaaaaaaa^URXa\\XI\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:31:1692:1137/1\n+CGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:31:1692:1137/1\n+baaaaabbaaaab^aaaaaaaaaaaaa[V^aa_[^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:1237:1905/1\n+CAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:1237:1905/1\n+aaaaabbaaaaaaaba^aaaaUaaaaaabababab\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:14:618:35/1\n+CGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:14:618:35/1\n+aaaaaaaaaa_]_aaaaaaaaaaaaaaa\\[]_a_X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:30:837:629/1\n+CTCCGTGTGCTCCATGGAGGACATGTGCCGCAGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:30:837:629/1\n+abbabaZaaaabbbaaaaaaaabaaaaaaaaaa`_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:1185:804/1\n+CGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:1185:804/1\n+aaabaaaaaaaa_]Saaaaa\\aaaaaaaa[aaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:78:236:1529/1\n+GCCGGAGCCCATGCGCAGCGGGGCGCGCGAGGTCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:78:236:1529/1\n+baaaa^aaaaaaabaaaaaaaaaaaaWaaO\\MJ_W\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:276:1452/1\n+CCCGGAGGCCCTCCTCCGTGTGCTCCATGGAGGAC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:276:1452/1\n+babaa^abaabaaaaaaaaaaaaab_U]a__^aaZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:32:510:1332/1\n+CGCTCCCGGAGGCCCTCCTCCGTGTGCTCCATGGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:32:510:1332/1\n+aabWabaaa^aaa^aaaa\\aaa^QQaaaaaLa\\[I\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:2:963:1089/1\n+GCGTCGGCAAGTCGCTCCCGGAGGCCCTCCTCCGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:2:963:1089/1\n+bbbbbbbaaaaaaaaaaa`Z[Q^aaa[X[^Z[[OO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:44:864:680/1\n+TCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:864:680/1\n+aaabaabbbaaaa^Q[aaaaaaaaaa^XX^XEKU^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:27:1068:808/1\n+CGCACACCTCCAGAAGGGTCACGCTCCTGTCAAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:27:1068:808/1\n+aaaaaaaaaabaaUZa^HJXJ[a\\^aaZaLaLaaV\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:92:694:1379/1\n+GCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTC\n++PATHBIO-SOLEXA2_30LE'..b'1\n+GACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:659:963/1\n+babaaaaaaaabbaabaaaaaaaaaaZZ\\aX^[Z[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:5:1524:224/1\n+ACCAGCCGGACCCCGTCGCCCTCCTGATGCTGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:5:1524:224/1\n+aaaaaaWaWaaaU`ZZ`S\\Z^Z^`]QXEKMOEPEG\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:761:1512/1\n+CTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:761:1512/1\n+bbababbbabbaaaa__`aa_^[_aaaaaaaa_^U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:69:1545:865/1\n+CGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:69:1545:865/1\n+a^aaaa\\aaab_X_aaaa_S`aaWa^aaaaabaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:930:1174/1\n+CGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:930:1174/1\n+aaaaaWa^aaaaaaaaaaaaaWaa^VSSaaaaaba\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:83:718:889/1\n+CGCTCCATGGAGGACATGTGCCGCAGCCCGAAGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:83:718:889/1\n+aabaaaaabaaaaaaaaaaaaaaaaaaaaaaa]_`\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:1417:658/1\n+CACCGGCTAGGTGACTCGGCCATGGCGTCGGCAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:1417:658/1\n+a^aZaaabaWWLaabaX[[ZHPVQ[J[HXWaZXZU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:66:867:1539/1\n+CCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:66:867:1539/1\n+bbaaaaaaaaaa_Z_aaa`_``]_^^^X^XOX^[^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:79:1578:1197/1\n+CCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:79:1578:1197/1\n+babaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:1021:322/1\n+TTCCTCCGTGTGCTCCATGGAGGACATGTGCCGCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:1021:322/1\n+aaaaaaaaWaaaaaabaaaaaWaaa^aaaaaaaZa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:61:1267:1990/1\n+CGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:61:1267:1990/1\n+aaabbaaaaaa`]`aaa`Z`a^V^\\^_UOU^VX[K\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:1242:1241/1\n+CGGCAAGTCGCTCCCGGAGGCCCTCCTCCGTGTGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:1242:1241/1\n+\\aaaaaaaa^U^aW`Z`aaaZaXEZ[[`]aaa_]_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:62:1224:1029/1\n+CCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:62:1224:1029/1\n+aaaabaaabaaaaaaaaaaaZaaaa[HXUaaZ`KO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:38:1108:325/1\n+GAGGACATGTGCCGCAGCCCGAAGCCCTCAGGCCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:38:1108:325/1\n+abbbaabbbbabbaaaaaaaaaaaaa_X^SX^aa^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:970:1046/1\n+CCGGCTAGGTGACTCGGCCATGGCGTCGGCAAGTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:970:1046/1\n+bbabaaaaaaaaaaaaX]Za[X^ZZZZ^ZHOU_PK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:82:1503/1\n+TCCCGGCTAGGTGACTCGGCCATGGCGTCGGCAAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:82:1503/1\n+bbbababa^aaaabaa`]_aaWaaaaaaa]]UGXZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:85:302:1496/1\n+GCCGCAGCCCGAAGCCCTCAGGCCTGCTCCCGCAC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:85:302:1496/1\n+abbaabababaaaababaaaaaabaaaaaaaaZU[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:26:441:786/1\n+CCGGCTAGGTGACTCGGCCATGGCGTCGGCAAGTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:26:441:786/1\n+aaaaabaaaWaa^aaaaaQI\\b^WaLaaaWaaaaW\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:8:434:166/1\n+ATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:8:434:166/1\n+abbaaaaaaaaaaaa___a^\\__`___a_`__[UX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:37:940:1981/1\n+GCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:37:940:1981/1\n+aabaaaaaabaa`_[^__]XVX^Z\\REEEMOGERK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1018:1410/1\n+GTCCCGGCTAGGTGACTCGGCCATGGCGTCGGCAA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1018:1410/1\n+aababbabbbaaWabaaaaaa^QX]]Saa`]]aa^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:1297:1236/1\n+CGTCGCTCCCGGAGGCCCTCCTCCGTGTGCTCCAT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:1297:1236/1\n+aaaabaaaaaaabaaaaaaaaaa^VXa[J^aaZZ^\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:45:1219:280/1\n+TGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:45:1219:280/1\n+baaaaaaaabaaaaXX[aaaaZaaaXEX[`__`a[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:36:1381:1758/1\n+GGAGGACATGTGCCGCAGCCCGAAGCCCTCAGGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:36:1381:1758/1\n+aaaaaaaWaaaaWaaa\\aaa^aaaaaaaaaaaaWa\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:29:27:808/1\n+GCTGGCCAGTCAGAAGCAGGTTGCTGGTACCTACG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:29:27:808/1\n+bbbaabaaaaaaaaaaaaaaaaaaaa[aa_``aaa\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/BCAS4-BCAS3_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/BCAS4-BCAS3_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,964 @@\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:57:1302:766/2\n+CTCGGCCATGGCGTCGGCAAGTCGCTCCCGGAGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:57:1302:766/2\n+bababbaaaaaaaaaaaaa__]_Z`aaa__[^[VO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:32:41:790/2\n+GCTCCATGGAGGACATGTGCCGCAGCCCGAAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:32:41:790/2\n+aaaaaaaaabbaaaaaaaaaaaaaaaaaa\\aaaaX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:37:1377:1073/2\n+CGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:37:1377:1073/2\n+aaaaaaaaaaaaaaaaZaaa`SZaaaV[[Z_[H[H\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:57:946:2022/2\n+CGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:57:946:2022/2\n+bbabbbbbabaaaaaaaaaaaaa^^^aa__]aa\\R\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:64:290:441/2\n+GCTCCATGGAGGACATGTGCCGCAGCCCGAAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:64:290:441/2\n+abaaaaaaabbbaaaaaaaaaaaaaaaaaaUaaa[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:76:1184:1673/2\n+CCACGACGTCCCGGCTAGGTGACTCGGCCACGGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:76:1184:1673/2\n+aaabaaaaWa^aaaZLaaLZaaLUUKRHVZIVaLG\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:254:1175/2\n+CCGTGTGCTCCATGGAGGACATGTGCCGCAGCCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:254:1175/2\n+aaa\\aaaabaaXaaaa^Q[Q[aWaaaaaaaaaZRU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:52:1132:327/2\n+CGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:52:1132:327/2\n+abbbbbbbaaaabbaaaaaaaaaaaa[\\^aa`]`Z\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:221:1785/2\n+GTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:221:1785/2\n+aabbaaa\\abb^aababaaaaaWa^QKSaOEKUaM\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:309:789/2\n+GTGCTCCATGGAGGACATGTGCCGCAGCCCGAAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:309:789/2\n+aZ^a\\^aaa\\aaaWaaaLa\\aaaZUa\\aabaL^aZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:1658:1977/2\n+GGCTAGGTGACTCGGCCACGGCGTCGGCAAGTCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:1658:1977/2\n+aaaabaaaaaaabaZaaXEXa^aWW^aaaW^La_E\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:59:1326:1906/2\n+CGCACACTGCTCTACCCTTTACAAGGTGCTTTCAC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:59:1326:1906/2\n+Za^aaabaaaaaZa^Zaaaa^aaa[UWWaaaaLaE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:38:270:183/2\n+CGCTCCCGGAGGCCCTCCTCCGTGTGCTCCCTGGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:38:270:183/2\n+babbaabababaaaaaabaaa\\\\\\a\\`[_RGRVXR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:31:1692:1137/2\n+CCCCGCACACCTCCAGCAGGGTCACGCTCCTGTCA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:31:1692:1137/2\n+babbbaaabbaaaa\\aa`ZRXaaaaaaaaaaaaaZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:95:1237:1905/2\n+CTCCCGGAGGCCCTCCTCCGTGTGCTCCATGGAGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:95:1237:1905/2\n+baba^abZWaaaaa\\aOaaa`]Maaaa[L^aUEPU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:14:618:35/2\n+GCTCCATGGAGGACATGTGCCGCAGCCCGAAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:14:618:35/2\n+aaaa`]`aaaaaaaaaaaaaaaaZaaaaaa^\\[_X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:30:837:629/2\n+CAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:30:837:629/2\n+aabaabbbbaaaaaaaaaaaaaaaaaaaaaaa__[\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:1185:804/2\n+GCTCCATGGAGGACATGTGCCGCAGCCCGAAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:1185:804/2\n+aaabaaaaaaaaaaaaaa^aaaaZZ\\aaa^aaaaR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:78:236:1529/2\n+CGGCTAGGTGACTCGGCCATGGCGTCGGGAAGGCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:78:236:1529/2\n+bbaaaaa\\\\aaaaaababWaLaaaL^a]UIQVIIU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:18:276:1452/2\n+GGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:18:276:1452/2\n+aaaaabbaaaabaaaaaaaaaaabREX^^V^S_XE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:32:510:1332/2\n+CAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:32:510:1332/2\n+^bbaaaaaaaaa^aaWaaa\\aaabaaLaaZaa\\LU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:2:963:1089/2\n+CTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:2:963:1089/2\n+abaabaaaaaaaaaaa`]`aaaaaaa^[[aaa__U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:44:864:680/2\n+GGCGTCGGCAAGTCGCTCCCGGAGGCCCCCCTCCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:864:680/2\n+aWaaabaaa^aSHXQSaUaUEKGKXSWXQVZQQ^G\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:27:1068:808/2\n+GCCGGAGCCCATGCGCAGCGGGGCGCGCGTGCTCG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:27:1068:808/2\n+H[Waaa^ZaaaWaaZa\\ZZI\\aXHSOa\\EERHQIH\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:92:694:1379/2\n+GTGCTCCATGGAGGACATGTGCCGCAGCCCGAAGC\n++PATHBIO-SOLEXA2_30LE'..b'2\n+TCCTCCGTGTGCTCCATGGAGGACATGTGCCGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:44:659:963/2\n+abababaaaaaaabaaaaaaaaaaaaaaaaaa_]U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:5:1524:224/2\n+ACTCCGTGTGCTCCATGGAGGACATGTGCCGCAGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:5:1524:224/2\n+aaaaaX]N_aaaa^Z^SH^a]ZQUKKXKR[VV[XX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:13:761:1512/2\n+CTCGGCCATGGCGTCGGCAAGTCGCTCCCGGGGGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:13:761:1512/2\n+aaaaaaaaaaaaaaaaa`[^XXUKMVVS[HPEUXK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:69:1545:865/2\n+GCCATGGCGTCGGCAAGTCGCTCCCGGAGGCCCTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:69:1545:865/2\n+aaaaaaaaaa_X[S[a^aa`UGRKXZKRUaW[JHO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:930:1174/2\n+GCCCGAAGCCCTCAGGCCAGCTCCCGCACACCTCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:930:1174/2\n+aaaaaabaa\\aaaa^^aa\\aa^aZaWaaaZaZLaZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:83:718:889/2\n+CCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:83:718:889/2\n+bbaaaaabaaabbbabaaababaaaaaaaaabaaZ\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:1417:658/2\n+GTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:1417:658/2\n+aZaaaOLaa\\aZaaZaaUa\\a\\aaa^aaaaaaLa_\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:66:867:1539/2\n+GGCCATGGCGTCGGCAAGTCGCTCCCGGAGGCCCT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:66:867:1539/2\n+abbbaaaabaaaaaaaaaaaaaaa_^^^[[^\\^^U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:79:1578:1197/2\n+CGGATTCCACGATGTCCCGGCTAGGTGACTCGGCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:79:1578:1197/2\n+baabbbabbaaaaaabaaa\\aaaa\\`S_aa^QV[Z\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:33:1021:322/2\n+ACGGGCTCCCAGGCAGCCTCCGCCAGCCGGAGCCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:33:1021:322/2\n+aaaabaL\\abaaaaaZaa\\a^Q\\a\\aZaWaZJSaX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:61:1267:1990/2\n+GTCGGCAAGTCGCTCCCGGAGGCCCTCCTCCGTGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:61:1267:1990/2\n+baaaaaaaaaaaaaaa`Z]_____a_____`][VR\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:91:1242:1241/2\n+CTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:91:1242:1241/2\n+aaaa\\aaaaaaWaaaa_UMaaaaaLa__]_[^^`U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:62:1224:1029/2\n+CGCTCCCGGAGGCCCTCCTCCGTGTGCTCCATGGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:62:1224:1029/2\n+^aa^aabaa]X_aaaaaa^aaaaaaaa[VV_W_RK\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:38:1108:325/2\n+CCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:38:1108:325/2\n+baaabaaaaaaaaabaaaaabaaaaZERaa\\aaQX\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:49:970:1046/2\n+CTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:49:970:1046/2\n+bbaaaabaaaaaaaaaaaaaaaaaaaa[[[a_OZU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:6:82:1503/2\n+TGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:6:82:1503/2\n+abaaaababaaaWaaaaaaaaaaZaaaa`]`aX[X\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:85:302:1496/2\n+CCGAGGCCCGGGCGCAACCACGGGCTCCCCGGCAG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:85:302:1496/2\n+abaaaaabbaaaaaaWaaaU]J_aaaaa`J]a[HO\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:26:441:786/2\n+CTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:26:441:786/2\n+aaaaabaaZaaaaabaabaaabaaaaaaaaaa\\`E\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:8:434:166/2\n+ACGACGTCCCGGCTAGGTGACTCGGCCATGGCGTC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:8:434:166/2\n+bbabbbaaaaaabbaaa`]_aa[MX_aa[[[\\Z^U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:37:940:1981/2\n+CCCGCACACCTCCAGCAGGGTAACGCTCCTGTCAA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:37:940:1981/2\n+aaaaabbababaaaaaaaaaEZPGU_^[[a_][^U\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1018:1410/2\n+GTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGG\n++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1018:1410/2\n+aaaabaaaaabaaaaaaaaaaa^^QZ^WaZ]_`aU\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:84:1297:1236/2\n+CCCGTCGCCCTCCTGATGCTGCTCGTGGGCGCTGA\n++PATHBIO-SOLEXA2_30LEJAAXX:7:84:1297:1236/2\n+aaaWaa\\aaaZ\\^MVZaIIZ[V^HS[MOEPRaUGP\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:45:1219:280/2\n+CCCGGCTAGGTGACTCGGCCATGGCGTCGGCAAGT\n++PATHBIO-SOLEXA2_30LEJAAXX:7:45:1219:280/2\n+abaaaaaJa\\\\aaa`Q[^aa_V^[a[J`aaWaaXM\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:36:1381:1758/2\n+CACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:36:1381:1758/2\n+aaaaaaZaaaaaWaZaaLbaaWaWWaaL][XaLaE\n+@PATHBIO-SOLEXA2_30LEJAAXX:7:29:27:808/2\n+GGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATC\n++PATHBIO-SOLEXA2_30LEJAAXX:7:29:27:808/2\n+aababbaaaaaaaaaaZaaaaa]JUU_aaa^EEGU\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/CXorf15-SYAP1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/CXorf15-SYAP1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:75:946:1909/1 +GGCGGACGGCGACGTAGCCCGCGGCAGAAGATAAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:75:946:1909/1 +abaabaaabaaaaaaaaaaaaabaVV_Z]aX]X][ +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:1722:953/1 +GCTGTTTCAGCAACTGATTCAGTTATATTTTTTGT ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:1722:953/1 +aaaa^^bbbbaaaaaaaaa\aaXaa`W`a^aa^H^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1450:1241/1 +GGCGACTGAGGCAGGACGGGGCGGACGGCGAGGCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1450:1241/1 +a^\aaaaaa^a^K^WaaLWLaaaaVS[aaLEKU^Z |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/CXorf15-SYAP1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/CXorf15-SYAP1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:75:946:1909/2 +CTTCATCGTTAGTGTCAACCCCTGGGGGCCCAGCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:75:946:1909/2 +abbbaabbbaa\aaaaaaaa^JMUH_aZKEXOKRE +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:1722:953/2 +GAGGAGGCAGCGCGGGGAAGAGGCGGCGGGGGCGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:1722:953/2 +aaaabaabaabbbbabaaaabaaba_S]^K\ILQE +@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1450:1241/2 +CGATTTTTCCTTCTTCTACGGATTTCTTTATTTTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1450:1241/2 +XEKQ[a\\L\aaaaaaaQVXHKa^`MXbXPURE[U |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:59:769:345/1 +ATTTGAAGCAGCCTATGTACTTGGGATTTGAAAAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:59:769:345/1 +aabaaaa^aa^bbbabaaaabaa^\aaaa\aaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:81:220:1548/1 +GTCACTTGAAAGAGCCTCTACTTACATTTCATCTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:81:220:1548/1 +aaaaaabbaaaaaaabaaaaaa`U^U^aa^V^aaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/DEPDC1B-ELOVL7_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:59:769:345/2 +CACAAATACTTCTGGTAGGCTGGCCCCAATGCAGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:59:769:345/2 +babbb^abababa^aaaaabaaaababaaaaaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:81:220:1548/2 +CTTATGTGGATGGCGACAATAACAAACTGGACAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:81:220:1548/2 +abaaabaaaaaabaabaaa_]`a_]`aaaU[Z[VX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/EP300-MRFAP1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/EP300-MRFAP1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,64 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1145:806/1 +GAGATTTCCTGAGGATTCTGGTTTTCCTCGCTTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1145:806/1 +bbbbbbaaaaaaaaaaaaaaaaaa`_]`[Q[`^KU +@PATHBIO-SOLEXA2_30LEJAAXX:7:22:1648:420/1 +GGCCGAGAATGTGGTGGAACCGGGGCCGCCTTCAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:22:1648:420/1 +aaaaaaaaaaaaaaaaZaaaa[S]`aaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:590:1587/1 +AAAAATGGCCGAGAATGTGGTGGAACCGGGGCCGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:590:1587/1 +baaaaaWaa^aaa^aaaaaaaaa\abaaaa`_Xaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:69:578:501/1 +GCATCTCTTCCCACTGCCTCGGAACCGCAATAGCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:69:578:501/1 +W^aaaaaXabZaaaaZaabaaaaa_]`a_W^V[aa +@PATHBIO-SOLEXA2_30LEJAAXX:7:16:987:1601/1 +GTGGAACCGGGGCCGCCTTCAGCCAAGCGGCCTAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:16:987:1601/1 +aaa^aababaaaaaaaabbaaabaaaaabaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:20:1374:264/1 +CCTGGGTGCGGCGCGGGGACCCCGGGCCGAAGAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:20:1374:264/1 +Zaa^aaJaaaWaabaaaaaa\aaaaaZabaWaZaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:88:641:1803/1 +CGACGATGTCCAGGGGCCGCATCTCTTCCCACTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:88:641:1803/1 +baaaaabaabaaaaaabaaaaaaaabbaa_X_a\a +@PATHBIO-SOLEXA2_30LEJAAXX:7:51:1479:654/1 +GTCCTCGCGCATCTCGTTGATGACCGGGAGCAGAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:51:1479:654/1 +aabbbaaababbbbaaaa\a^Q^a^RE[__\^^aZ +@PATHBIO-SOLEXA2_30LEJAAXX:7:63:347:1159/1 +CGGGAATGTGGTGGAACCGGGGCCGCCTTCAGCCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:63:347:1159/1 +aNaaaaaaaaaaaaaaaaaaaaaabaaaaL\a_J] +@PATHBIO-SOLEXA2_30LEJAAXX:7:100:1324:832/1 +CTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:100:1324:832/1 +aaab\^aaaaaaaaaa^baaaaaaaaXS_PEUKMa +@PATHBIO-SOLEXA2_30LEJAAXX:7:35:460:430/1 +AAAGAATTAAAAATGGCCGAGAATGTGGTGGAACC ++PATHBIO-SOLEXA2_30LEJAAXX:7:35:460:430/1 +aaaaaaaaaaaaaaaaabaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:216:472/1 +CGCGGGGACCCCGGGCCGAAGAAGAGATTTCCTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:216:472/1 +aaaaaaa^^aba^aaaaaL\a^Z^aaaaaaabaab +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:935:1284/1 +CGAGAATGTGGTGGAACCGGGGCCGCCTTCAGCCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:935:1284/1 +baaabbbbbbbaaaaaa`Z_aaaa___aa[^^^UX +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:420:2011/1 +GTTGATGACCGGGAGCAGAAACTGCTCGAAATCCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:420:2011/1 +aaaaaababbaaaaaaaaaaaaaaaaaa^aaaa[[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:78:1306:986/1 +GCCTCGCGCATCTCGTTGATGACCGGGAGCAGAAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:78:1306:986/1 +abaabbbaaaaabaZabaaaaaaa^aXKX_`_Z`[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:58:580:1277/1 +CGGGCTCCAGCACCTCCACTTCCTCCGGTTCCGCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:58:580:1277/1 +baaaaaaaaaaaaa^aaaXMPaWaaaaOQS[\VVX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/EP300-MRFAP1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/EP300-MRFAP1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,64 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:17:1145:806/2 +GCCAGCTCGACGATGTCCAGGGGCCGCATCTCTTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:17:1145:806/2 +abaaabbbaaaaaaaaaaa_]_aaa____aaaa^U +@PATHBIO-SOLEXA2_30LEJAAXX:7:22:1648:420/2 +CGGGAGCAGAAACTGCTCGAAATCCTCCTCGGGCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:22:1648:420/2 +babababbabaaaaaaaabaabbbaabaaaaZaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:590:1587/2 +GGCCGCATCTCTTCCCACTGCCTCGGAACCGCAAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:590:1587/2 +babaaa\abaa\aabaMaUaaaaaUMEX]]OaZ[G +@PATHBIO-SOLEXA2_30LEJAAXX:7:69:578:501/2 +CTGGGTGCGGCGCGGGGACCGCGGGCCGAAGAAGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:69:578:501/2 +abaaa^aaaaababaaZaaXH[aVLIULZa[UP[K +@PATHBIO-SOLEXA2_30LEJAAXX:7:16:987:1601/2 +CTCGGTGATGACCGGGAGCAGAAACTGCTCGAAAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:16:987:1601/2 +aZaaaMaa\baabaaaZaaaabaaaaaLUaaa^VP +@PATHBIO-SOLEXA2_30LEJAAXX:7:20:1374:264/2 +CTTCCCACTGCCTCGGAACAGCAATAGCGATGTCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:20:1374:264/2 +aab^aaaaa\aaaaa\aaa\Uaaaaaaaa^WaMaE +@PATHBIO-SOLEXA2_30LEJAAXX:7:88:641:1803/2 +GCTGAGAATGTGGTGGAACCGGGGCCGCCTTCAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:88:641:1803/2 +aaaaaaaaaaaabaaaaaaaaaaabaaaa\X]_aU +@PATHBIO-SOLEXA2_30LEJAAXX:7:51:1479:654/2 +GCCGCCTTCAGCCAAGCGGCCTAAACTCTCATCTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:51:1479:654/2 +abaaaaaaaaaaaaaaaaaaa^V^aa`__aaaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:63:347:1159/2 +TCTCGTTGATGACCGGGAGCAGAAACAGCTCGAAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:63:347:1159/2 +aaaaaaa^aREXaaUaaaUQQVQUaMEOZZaPEUM +@PATHBIO-SOLEXA2_30LEJAAXX:7:100:1324:832/2 +TGCTCGCGCGTCAGCGACGCGATGTCCTCGCGCAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:100:1324:832/2 +aLaaW^aZaZaaaZa^^aaaZ\\^aabOEZabZ]X +@PATHBIO-SOLEXA2_30LEJAAXX:7:35:460:430/2 +CTCGAAATCCTCCTCGGGCTCCAGCACCTCCACTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:35:460:430/2 +aaaaaabaaaZaaaaaaaaaaUEPaaaaaaaa]JK +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:216:472/2 +CGACGATGTCCAGGGGCCGCATCTCTTCCCACTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:216:472/2 +aaaaaba^abba^aaaaaa\aaaaaaWaaaLaa^Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:935:1284/2 +CCGACGATGTCCAGGGGCCGCATCTCTTCCCACTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:935:1284/2 +bbbbbaaabaaaa`]`aaaaaaaaaaaa^\^X^^M +@PATHBIO-SOLEXA2_30LEJAAXX:7:24:420:2011/2 +GGAACCGGGGCCGCCTTCAGCCAAGCGGCCTAAAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:24:420:2011/2 +babaaaabbbaabaabababaaaaaaaaaa[V^\U +@PATHBIO-SOLEXA2_30LEJAAXX:7:78:1306:986/2 +GAACCGGGGCCGCCTTCAGCCAAGCGGCCTAAACT ++PATHBIO-SOLEXA2_30LEJAAXX:7:78:1306:986/2 +baaaaaZ^aaaaaaaa^VVaVQXa^[[a_V[[\UM +@PATHBIO-SOLEXA2_30LEJAAXX:7:58:580:1277/2 +GTTTTCCTCGCTTGTATCTCCGAAAGAATTAAAAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:58:580:1277/2 +babbaaaaaaaa`S[aaaaZ^]]ZK\[ZEZa^aa[ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/EWSR1-TFF1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/EWSR1-TFF1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:43:757:1645/1 +GAAGAGGTGGCCTCATGGATCGTGGTGGTCCCGGT ++PATHBIO-SOLEXA2_30LEJAAXX:7:43:757:1645/1 +abbbaaa^aaa]J`^aaaaaaaaaaaaaUKRXaXE |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/EWSR1-TFF1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/EWSR1-TFF1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:43:757:1645/2 +CGGGCGTGACACCAGGAAAACCACAATTCTGTCTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:43:757:1645/2 +aaaaaaa^aabaaaaaaaaaa^aaaaaaaaaa\aZ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/MYO9B-FCHO1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/MYO9B-FCHO1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,40 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:1384:1511/1 +CGCGTGAACCAGTGCATCGTGATCTCGGGTGAGAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:1384:1511/1 +aaaaaaaaaaaaaaaa^aaaaaaa^aaWaLa^aWa +@PATHBIO-SOLEXA2_30LEJAAXX:7:81:1032:792/1 +TGACGTCAAAGCCCTTGGAGCGGTATGTGCTAGAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:81:1032:792/1 +aaaaaabaaaaaaaaaaaaaaaa^aaaaaaaa^]Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:83:340:930/1 +AGTTCTCGCGGGACTTGGGCAGGAGCTGGCTGACG ++PATHBIO-SOLEXA2_30LEJAAXX:7:83:340:930/1 +aababbbabaaabbbaaaaaaaaaaaaaaaa][V^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:10:418:605/1 +GCGCTGGCCGACGTGGCCTACTACACCATGCTCAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:10:418:605/1 +aaaaabaaaaaaaaaabaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:14:562:448/1 +GGACCATCCTGGGTGCTGGCCCTGTGCTGGAGTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:14:562:448/1 +bbbbbbbbbaaaaaaaaaaaaaaaaaaa_Z_V_Z\ +@PATHBIO-SOLEXA2_30LEJAAXX:7:25:1647:751/1 +CTCGTGGGACTTGGGCAGGAGATGGCTGACGCCCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:25:1647:751/1 +aaaaaaa_X[a^^[aaaaaaUXX][^^aZ[UXU\U +@PATHBIO-SOLEXA2_30LEJAAXX:7:84:437:1347/1 +CCAGTGCATCGTGATCTCGGGTGAGAGCGGCTCCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:84:437:1347/1 +aaaaabaaaaaaaaaabaaaaa\\^`]aaaaaa_Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:696:1167/1 +CTACACCATGCTCAGGAAGCGCGTGAACCAGTGCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:696:1167/1 +abbabaaaaaabbbaaaaababaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:95:842:1694/1 +CACCTGCACAGCATCCAAGGTGCTCACCACTTCCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:95:842:1694/1 +aaabaaaaaaaaaab^U[^[^aaaaaaaa`_]aaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:49:555:429/1 +GCCGCTCCTGGTCCATGCGACGGTTCAGGTAGTTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:49:555:429/1 +aabaaaaaabbW^aLa\aa^REXLa[Z^[IKVHX[ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/MYO9B-FCHO1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/MYO9B-FCHO1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,40 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:1384:1511/2 +CAGGAGCTGGCTGACGCCCGAGAGTACCTGAACAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:1384:1511/2 +aabaa^aaaaaaaaaaaaa^^ab\WaaaaQQVaaR +@PATHBIO-SOLEXA2_30LEJAAXX:7:81:1032:792/2 +CTTGGCCATGGTAGACAACCTGCAGGGGGACTCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:81:1032:792/2 +bbaaaaaaaaaaaaaaaaaa[ZZ_Zaaa_UZa^_U +@PATHBIO-SOLEXA2_30LEJAAXX:7:83:340:930/2 +CGCCCTCAGCCAGAAGGGCTACGCCAGCGGCGTCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:83:340:930/2 +aaabbaaaaaaabaaaabbabaaa_U^aaaaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:10:418:605/2 +GCCGCCTTCTTGGTTTTAGTCTCCGCCTCCAGCAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:10:418:605/2 +aaabaaaaaabaaaaaa^[[bab^H[aaaaaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:14:562:448/2 +CGCGGGACTTGGGCAGGAGCTGGCTGACGCCCGAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:14:562:448/2 +aaaabaaaaaaaaaaaaaaaaaaaa\^[[[^ZRRX +@PATHBIO-SOLEXA2_30LEJAAXX:7:25:1647:751/2 +CGTGATCTCGGGTGAGAGCGGCTCCGGCAAGACCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:25:1647:751/2 +baaaaLbaaaaa``____aa^^^XE[aUEU[VURX +@PATHBIO-SOLEXA2_30LEJAAXX:7:84:437:1347/2 +CGCGGGACTTGGGCAGGAGCTGGCTGACGCCCGAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:84:437:1347/2 +babbaaaaaaaaaa^aaaaaaaaaaaaaaaaa[VR +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:696:1167/2 +CCCGAGAGTACCTGCACAGCATCCAAGGTGCTCAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:696:1167/2 +abbabaabaabaaaaaaaa^QXaaU\ZaLaZa[JU +@PATHBIO-SOLEXA2_30LEJAAXX:7:95:842:1694/2 +CGCTGGCCGACGTGGCCTACTACACCATGCTCAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:95:842:1694/2 +bbaaaaabbabaaaaaaaaaaaaaaaaaaaaaaa[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:49:555:429/2 +CCCAGAGCACCAACTTCCTCATCCACTGCCTCACC ++PATHBIO-SOLEXA2_30LEJAAXX:7:49:555:429/2 +aaaaa\abbaaaab\baa^aaaa\\aaabaaa^aX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/NAV1-GPR37L1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/NAV1-GPR37L1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,20 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:72:139:396/1 +CGGGTGTCCCCGGGTGTCAGGCGAGAGCGGTCCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:72:139:396/1 +bbabbbbbbbaaaaaaaaa_]`aaaa`]__]_aaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:74:1328:1715/1 +CGGTGAATGGCCGCCTGAGCCGGGGAAGATGCTTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:74:1328:1715/1 +aaaLaabaaabaaaaaaaaaaaaaaaaaaaaaaa\ +@PATHBIO-SOLEXA2_30LEJAAXX:7:34:988:884/1 +CTCCGCGTGGCCCACAGCTCATACCTTTTCGGGTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:34:988:884/1 +abbabaaabbbabaa^aabaaaaaaaaabaWS[aU +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:728:1661/1 +CTCATGGGCAAGACCATGACGGAGGATGATGACAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:728:1661/1 +baaaaaaababaaabaaaaaaaaaaaaaaaa]_]a +@PATHBIO-SOLEXA2_30LEJAAXX:7:16:1595:2032/1 +GGCACAGAGGCTGAAAGTCGTGACTCCCAGCGAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:16:1595:2032/1 +a\aaaabaaaaaaLaZaaaa^aZaaaaa^^Q^^aX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/NAV1-GPR37L1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/NAV1-GPR37L1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,20 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:72:139:396/2 +ATGGGCCTCACCTTGGGCAGGGTGCTGGTGGCCAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:72:139:396/2 +babbbbbbaaabaaaaaaaaaaaaaaaaaaaa[[U +@PATHBIO-SOLEXA2_30LEJAAXX:7:74:1328:1715/2 +AGATGACAGCCAACTTGGCCAGGATGGATTGGCAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:74:1328:1715/2 +aaaaaabaaaaaaaZRUUaa\aaa___ZaUEMJaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:34:988:884/2 +GGCGCAGAGGCTGAAAGTCGTGACTCCCAGAGAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:34:988:884/2 +aaaaaaaaaaabaaaabaaabaaaaaaaaaX_]aU +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:728:1661/2 +GGCACAGAGGCTGAAAGTCGTGACTCCCAGAGAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:728:1661/2 +aabaabbaaaaababaaaaaaaaaaaaZKUUVV[X +@PATHBIO-SOLEXA2_30LEJAAXX:7:16:1595:2032/2 +GGTTTCCGACCCTCCGCGTGGCCCACAGCTCATAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:16:1595:2032/2 +baaaaaaaaaaaaaaaaba\aaaaaaL^a\aWbaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/PAPOLA-AK7_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/PAPOLA-AK7_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:69:384:648/1 +GGAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:69:384:648/1 +baaaaababbaaaaaabaaaaa[HXH^[J^KX^XM +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:1726:1492/1 +CGTGTGTAACATGCCTCCTTCCGCTCCATACTTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:1726:1492/1 +URKQ^aaaaaa[ERS^aaaaaaaaaa^^^^aZEEE |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/PAPOLA-AK7_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/PAPOLA-AK7_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:69:384:648/2 +GCCTCCTTCCGCTCCATACTGGAGTCCAGCCGCAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:69:384:648/2 +aabababaabaaaaa^aVZZaUKRZZ_XZZ^ZVKU +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:1726:1492/2 +GAGCGCTTAAAGCGGCGGCAGCGGTGCGGGAGAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:1726:1492/2 +ab\ababaaaaaaaaa[UEEZLaaSREXXQH^JSU |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/RPS6KB1-TMEM49_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/RPS6KB1-TMEM49_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,124 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:10:1274:1893/1 +GGCAGGAGTGTTTGACATAGACCTGGACCAGCCAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:10:1274:1893/1 +aaaaaaaaaaaabbaaabaaaaaaaa`]_aaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:100:634:300/1 +CCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:100:634:300/1 +ZaabaZaaaaaaZaaaaa^a^aaLaababaaaa^a +@PATHBIO-SOLEXA2_30LEJAAXX:7:14:202:351/1 +CAAAGAAGGTCCAAAAACGCACCAGAAAGTGTCCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:14:202:351/1 +aaaaaabaaaaaaaWa^IZWaaaaaaaa^JJ^a_M +@PATHBIO-SOLEXA2_30LEJAAXX:7:2:225:1594/1 +CTTCTGCAGAGATGGACCTATGCCGGGGACAGCAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:2:225:1594/1 +abababaaa^aabaaaabbaaaabaaaaaaaa^[U +@PATHBIO-SOLEXA2_30LEJAAXX:7:30:864:1299/1 +GTGCCCATTTCGCTTTTGTGGTGAAGCTTCTGCCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:30:864:1299/1 +aaaaaaaaaababaaa^Z\Z\RKU[KX^SVUEUZa +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:1461:970/1 +CTGCAGAGATGGACCTATGCCGGGGACAGCAAGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:1461:970/1 +bbbbaaaaaaaaaaaaa^X^`]`aaa^^^`^^^a_ +@PATHBIO-SOLEXA2_30LEJAAXX:7:50:550:1851/1 +GCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:50:550:1851/1 +baaababababbbaaabaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:39:1115:223/1 +GACGGCTTTTACCCAGCCCCGGACTTCCGAGACAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:39:1115:223/1 +aaaaa\baaZaaaabaaUab\aH[^a^ab^[HZKM +@PATHBIO-SOLEXA2_30LEJAAXX:7:90:883:1309/1 +GGCTTCTGCAGAGATGGACCTATGCCGGGGACAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:90:883:1309/1 +b^^VbaaLaaaWaa^abWaba^aVVXaaa^aaaa] +@PATHBIO-SOLEXA2_30LEJAAXX:7:48:1382:1277/1 +GCCCATTTCGCTTTTGTGGTGAAGCTTCTGCCGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:48:1382:1277/1 +baaaaaabaaaababa`UXa^ZVQaaaaaXaaXa_ +@PATHBIO-SOLEXA2_30LEJAAXX:7:41:1024:486/1 +GAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:41:1024:486/1 +aaaaaaOZaaaaaa[aaa]__aa[Q^aXEUMXW[] +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:502:1712/1 +GAAGCTTCTGCCGTTGAGCCTCCAGGTACTCCTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:502:1712/1 +bbaabbabaaaaaa]W`aaaaaaaa_U_aaaa^S^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:1040:80/1 +CAGTTAAATGAAAGCATGGACCATGGGGGAGTTGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:1040:80/1 +aaa\baaaaaabaabaaaaaaaaaaaaaaZX[[\a +@PATHBIO-SOLEXA2_30LEJAAXX:7:83:418:1017/1 +GGCTTCTGCAGAGATGGACCTATGCCGGGGACAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:83:418:1017/1 +babbbbaaaaaaaaaaaaaaaaaaaaaaa``_aaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:329:1148/1 +CAGAGAGTGAAGCAAGCAGCATGGCCCACAGTCTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:329:1148/1 +a^aaaabLa^abaaaaaaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:12:40:1105/1 +GACGGCTTTTACCCAGCCCCGGACTTCCGAGACAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:12:40:1105/1 +abaaaabaabaaaaaaaaaUZQ\aaaaaa^aa^V^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:43:1027:1268/1 +TTCGCTTTTGTGGTGAAGCTTCTGCCGTTGAGCCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:43:1027:1268/1 +aaaaaaaabaLLW^aaaaabaW_[WXEX[ERGXa\ +@PATHBIO-SOLEXA2_30LEJAAXX:7:77:269:664/1 +GGCTTCTGCAGAGATGGACCTATGCCGCGGACAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:77:269:664/1 +aabbababbaaababaaaaabaaaaa\I^aaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:27:1158:1997/1 +CGACGAAGGAGGCGGGACGGGTTTTACCCAGCCCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:27:1158:1997/1 +baaaaaaaaa^\aaabaaaOEUaaaaaXEKJZa^b +@PATHBIO-SOLEXA2_30LEJAAXX:7:62:348:653/1 +GCCCATGAGGCGACGAAGGAGGCGGGAGGGCTGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:62:348:653/1 +aaaaZa[QHbaZaaa\a^K[aWaaaaHEUaa^QVX +@PATHBIO-SOLEXA2_30LEJAAXX:7:94:413:35/1 +TGGTGAAGCTTCTGCCGTTGAGCCTCCAGGTACTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:94:413:35/1 +aaaaaaa^aaaa^Q^aaaaaaWaaa\ZUEPS^U_a +@PATHBIO-SOLEXA2_30LEJAAXX:7:96:1411:1152/1 +ATAGGATGAAGTAACACACCATGACAACGACCAAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:96:1411:1152/1 +bbbbabaaaaaaaaaaaabbaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:468:704/1 +GAAGCTTCTGCCGTTGAGCCTCCAGGTACTCCTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:468:704/1 +aaaaaaZaaaaaaaaaLaaXaaaaa[V\aaaaa[X +@PATHBIO-SOLEXA2_30LEJAAXX:7:78:390:343/1 +GCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:78:390:343/1 +aaaaaaabbaaaabbaaabaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:80:168:362/1 +CCGAGACAGGGAAGCTGAGGACATGGCAGGGGTGT ++PATHBIO-SOLEXA2_30LEJAAXX:7:80:168:362/1 +aaaWaaaaZab\aaaabZaaaaaaaaa^aa\aXaL +@PATHBIO-SOLEXA2_30LEJAAXX:7:38:257:225/1 +GCCCATTTCGCTTTTGTGGTGAAGCTTCTGCCGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:38:257:225/1 +bbbaaabbbaaaa\aa`[X_Z[^aaaaaaXaaaa^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:15:300:871/1 +CTGCCGTTGAGCCTCCAGGTACTCCTGAAATGGCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:15:300:871/1 +baaaaaaaaaaaaaaaaaa_]`aaa_VXUXa^Z^a +@PATHBIO-SOLEXA2_30LEJAAXX:7:96:705:1693/1 +ACCCATTTCGCTTTTGTGGTGAAGCTTCTGCCGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:96:705:1693/1 +ababaaaabababb`W`aa_ZZaaabbbaaaaaa^ +@PATHBIO-SOLEXA2_30LEJAAXX:7:56:488:257/1 +TGAAATGGCTTCTGCAGAGATGGACCTATGCCGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:56:488:257/1 +baaaaababbbaaaa]_]`]`aaaaaaa_V_^V[O +@PATHBIO-SOLEXA2_30LEJAAXX:7:33:364:81/1 +GCCAACTTTTCAAACATCCAGGACAACCAGTTTTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:33:364:81/1 +aab^abbbaaabbbaaabbaaaaaaaaaaaaabaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:55:572:1065/1 +GTTAATGATAGATAGGATGAAGTAACACACCATGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:55:572:1065/1 +bbbbbaaabaaaaaaaaaaaaaaaaaaaaa`_`__ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/RPS6KB1-TMEM49_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/RPS6KB1-TMEM49_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,124 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:10:1274:1893/2 +GCCCATTTCGCTTTTGTGGTGAAGCTTCTTCCGTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:10:1274:1893/2 +bbaa^abaaabbbaaaaa\aSX`Uaa`JXEUJ`aX +@PATHBIO-SOLEXA2_30LEJAAXX:7:100:634:300/2 +CCCATTTCGCTTTTGTGGTGAAGCTTCTGCCGTTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:100:634:300/2 +QZaa^aW^aaaaaa^WJMUEMbWaaaaEKXEE^ZE +@PATHBIO-SOLEXA2_30LEJAAXX:7:14:202:351/2 +GTTTGACATAGACATGGACCAGCCAGAGGACGCGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:14:202:351/2 +_JJ`baaabaabXE[aaaabaaZaaaaaaa\IK_Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:2:225:1594/2 +CGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:2:225:1594/2 +aabbaababaa^\aaaaZaaaaaaaaZaaa^aa^U +@PATHBIO-SOLEXA2_30LEJAAXX:7:30:864:1299/2 +GGGAAGCTGAGGACATGGCAGGAGTGTTTGACATA ++PATHBIO-SOLEXA2_30LEJAAXX:7:30:864:1299/2 +baaaaaaabaaaaaaabaaaZ`]a[a^aa^_^\^P +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:1461:970/2 +GGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:1461:970/2 +aabbbaaaaaaaaaaaaaaaa_[_aa[Z\]_aa[U +@PATHBIO-SOLEXA2_30LEJAAXX:7:50:550:1851/2 +GGCTTCTGCAGAGATGGACCTATGCCGGGGACAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:50:550:1851/2 +ababbaaaaaaaaaaaaaaaaaaaaaaa^`RMU[K +@PATHBIO-SOLEXA2_30LEJAAXX:7:39:1115:223/2 +GCCTCCAGGTACTCCTGAATTGGCTTCTGCAGAGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:39:1115:223/2 +baaaaaL\aWbaaa\aLa[H[WWaaaaREXaaUEX +@PATHBIO-SOLEXA2_30LEJAAXX:7:90:883:1309/2 +GGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTT ++PATHBIO-SOLEXA2_30LEJAAXX:7:90:883:1309/2 +aaWaaaaaaLaaaaabaaaZaabWaaaEEOaZW^U +@PATHBIO-SOLEXA2_30LEJAAXX:7:48:1382:1277/2 +TGGCAGGAGTGTTTGACATAGACCTGGACCAGCCA ++PATHBIO-SOLEXA2_30LEJAAXX:7:48:1382:1277/2 +aaaaaaaaaaababaaaabaaaaaaaaaaaaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:41:1024:486/2 +TTCGCTTTTGTGGTGAAGCTTCTGCCGTTTAGCCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:41:1024:486/2 +aaa[H[aaPEUOEUE[[Q[aUUZGEUUaXEEEKZE +@PATHBIO-SOLEXA2_30LEJAAXX:7:45:502:1712/2 +CGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:45:502:1712/2 +aaaababaaaabaaaaaba[X^aaa^I^Z^aaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:1040:80/2 +GAAGCTTCTGCCGTTGAGCCTCCAGGTACTCCTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:1040:80/2 +aaaaaaabaaa_S`_S^Z[aaaaXRUaaaaaa_QU +@PATHBIO-SOLEXA2_30LEJAAXX:7:83:418:1017/2 +GGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:83:418:1017/2 +baabbaabbaaaabaaaaa[V^aaaa[V^aaaaXE +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:329:1148/2 +GTTTGGGGCTGGAATGAAAGGCCATGAATCTGGAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:329:1148/2 +aaaaaab^aa^W^aabaaaaaaaaaaa^aaa\aaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:12:40:1105/2 +TGGTGAAGCTTCTGCCGTTGAGCCTCCAGGTACTC ++PATHBIO-SOLEXA2_30LEJAAXX:7:12:40:1105/2 +Oaaaaaaaaabaaa\abaab^^aaaaa^aaLaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:43:1027:1268/2 +GGAAGCTGAGGACATGGCAGGAGTGTTTGACATAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:43:1027:1268/2 +aaaaaaaaaWbaaaaaa\abaWa\aa^^aZWa^^Z +@PATHBIO-SOLEXA2_30LEJAAXX:7:77:269:664/2 +GACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:77:269:664/2 +baaba^aaaaaaaaa\aaa\aaaaaaaaaaaaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:27:1158:1997/2 +CTGAAATGGCTTCTGCAGAGATGGACCTATGCCGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:27:1158:1997/2 +abaaaaaaaaababab\aaaa\aaWaaSQ[ZHSSR +@PATHBIO-SOLEXA2_30LEJAAXX:7:62:348:653/2 +CTTATGCAGAGAGGGACCTATGCCGGGGACAGCAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:62:348:653/2 +aa^H[baXEUZQUXH[[EZaIZZ`ZZaaZJ__[^K +@PATHBIO-SOLEXA2_30LEJAAXX:7:94:413:35/2 +CCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGT ++PATHBIO-SOLEXA2_30LEJAAXX:7:94:413:35/2 +aaaababaaaaaaaaaaaaaaa^baaaaaaaa\aX +@PATHBIO-SOLEXA2_30LEJAAXX:7:96:1411:1152/2 +GTTAAATGAAAGCATGGACCATGGGGGAGTTGGAC ++PATHBIO-SOLEXA2_30LEJAAXX:7:96:1411:1152/2 +bbbbbbaaabaaaaaaaaaaaaaaa^aaaaaaaaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:68:468:704/2 +TTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:68:468:704/2 +babbaaab^a^aWaaaaaa^aaa\``_Za\a^QXH +@PATHBIO-SOLEXA2_30LEJAAXX:7:78:390:343/2 +CAACGACCAACTTTTCAAACATCCAGGACAACCAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:78:390:343/2 +aaaaaaaaWabaaaaaZaabaaaaOEU`aUa\aQU +@PATHBIO-SOLEXA2_30LEJAAXX:7:80:168:362/2 +GAAGCTTCTGCCGTTGAGCCTCCAGGTACTCCTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:80:168:362/2 +aaaaaaaababaaba^baabaaaaaaabbbaa\\X +@PATHBIO-SOLEXA2_30LEJAAXX:7:38:257:225/2 +GGAGTGTTTGACATAGACCTGGACCAGCCAGAGGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:38:257:225/2 +aa\aabbbbaabba^aaaaaaaaaaaaa_^QaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:15:300:871/2 +CTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:15:300:871/2 +bbbbaaabaaaabb`]_]`aaa^VV^^^[^_^^^` +@PATHBIO-SOLEXA2_30LEJAAXX:7:96:705:1693/2 +GGAGTGTTTGACATAGACCTGGACCAGCCAGAGGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:96:705:1693/2 +abaaaaabaaababbaaabaaaaaaaaabaaabaX +@PATHBIO-SOLEXA2_30LEJAAXX:7:56:488:257/2 +CTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:56:488:257/2 +bbabaaabaaaabbaaaWaaaaaa[]]_]`][PMX +@PATHBIO-SOLEXA2_30LEJAAXX:7:33:364:81/2 +GAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:33:364:81/2 +aaaaaaaaabaaaaaaaab^aaaaaaaabaaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:55:572:1065/2 +TGAAAGCATGGACCATGGGGGAGTTGGACCATATG ++PATHBIO-SOLEXA2_30LEJAAXX:7:55:572:1065/2 +baaaaaabbababaaaaaaaaaaaaaaaa`^H^^U |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/STK11-MIDN_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/STK11-MIDN_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,40 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:902:1724/1 +GAGCTTGCATCACGGACTGCTCCGGCCTTGAGGCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:902:1724/1 +bbabbabaaaabbaaaaaaabbaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:70:727:1607/1 +CTGGGCGTGGCAGCGGAGCTGGGCCAGCGAAGGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:70:727:1607/1 +baaabaaabbaaaaaa\aaaaaa\aaaaa]X`aaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:85:1254:2020/1 +AGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:85:1254:2020/1 +ababababababaabaaaaaZaaaaaUaaaaaaa_ +@PATHBIO-SOLEXA2_30LEJAAXX:7:92:651:457/1 +AGCGGGCCAAGCTCATCGGCAAGTACCTGATGGGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:92:651:457/1 +aaaaabbaaaaabaaaaaaaaaaaaaaa]]`^S^_ +@PATHBIO-SOLEXA2_30LEJAAXX:7:30:916:209/1 +CGGTGGGTACCAAGGTCAGCTTGCTGCCATCACCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:30:916:209/1 +aWaa^Wa^Waaaaaa^aZa\a]J_[SVVQ[\^_aa +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:886:1490/1 +CTGGACTCGGAGACGCTGTGCAGGAGGGCCGTCAA ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:886:1490/1 +bbbaabbaaaaaabbaaaaa[X[_aaa^X[^[RU[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:51:1121:401/1 +GTCAGCTTGCTGCCATCACCCACGCCGAACTCCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:51:1121:401/1 +baaaabaaaaaaabbaaaabaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:94:660:647/1 +CTGCCATCACCCACGCCGAACTCCTGCAGCTTCCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:94:660:647/1 +bbabbabbbbbaaaaaaaaaaaaaaa_V^aaaaaa +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:565:460/1 +GCCCGCTTCCACGGTGGGTACCAAGGTCAGCTTGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:565:460/1 +aabb^aaaaaaaa^aZ\a^aaaaaaaa^^^aaZX] +@PATHBIO-SOLEXA2_30LEJAAXX:7:5:1206:149/1 +GCTGGACTCGGAGACGCTGTGCAGGAGGGCCGTGA ++PATHBIO-SOLEXA2_30LEJAAXX:7:5:1206:149/1 +L]S]La\a_Z`aaaaaaaaaaWaVXUX]`GRUKEX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/STK11-MIDN_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/STK11-MIDN_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,40 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:91:902:1724/2 +GTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAG ++PATHBIO-SOLEXA2_30LEJAAXX:7:91:902:1724/2 +abbaaaaaabaaaabbabbbaaaaaaaaaaa^MUX +@PATHBIO-SOLEXA2_30LEJAAXX:7:70:727:1607/2 +CCCGGGGCGCCCGCGAGTGAGGCGCGGGGCGGCGG ++PATHBIO-SOLEXA2_30LEJAAXX:7:70:727:1607/2 +aabaaaaaaaaaaa]S_aa[X`a^V[]aaZaaJUK +@PATHBIO-SOLEXA2_30LEJAAXX:7:85:1254:2020/2 +GCCATCACCCACGCCGAACTCCTGCAGCTTCCCCG ++PATHBIO-SOLEXA2_30LEJAAXX:7:85:1254:2020/2 +baaaabaaaa^a\b_[[aaaaaZaaaaaaaaabaP +@PATHBIO-SOLEXA2_30LEJAAXX:7:92:651:457/2 +GCTGCCATCACCCACGCCGAACTCCTGCAGCTTCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:92:651:457/2 +bbabbaaaaaaaaaaaaaaaaaaaaaa^Z_aaaa[ +@PATHBIO-SOLEXA2_30LEJAAXX:7:30:916:209/2 +TCTGGACTCGGAGACGCTGTGCAGGAGGGCCGTCT ++PATHBIO-SOLEXA2_30LEJAAXX:7:30:916:209/2 +abbaabaaLaWaaabbLWaUEER]aa]JM\UUEEK +@PATHBIO-SOLEXA2_30LEJAAXX:7:86:886:1490/2 +GTCAGCTTGCTGCCATCACCCACGCCGAACTCCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:86:886:1490/2 +abbaaaababaaabbaaaaa^V^aaa\^^aaaa[P +@PATHBIO-SOLEXA2_30LEJAAXX:7:51:1121:401/2 +AGGTGCTGGACTCGGAGACGCTGTGCAGGAGGGCC ++PATHBIO-SOLEXA2_30LEJAAXX:7:51:1121:401/2 +aaaaabbbaaabbaaaabbaabaaaaaaaaaaaaU +@PATHBIO-SOLEXA2_30LEJAAXX:7:94:660:647/2 +CGCAAGCGGGCCAAGCTCATCGGCAAGTACCTGAT ++PATHBIO-SOLEXA2_30LEJAAXX:7:94:660:647/2 +aaaaaaaaaaaaaaaaa`X`aaa`__aaaaaaa_X +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:565:460/2 +GCAAGTACCTGATGGGGGACCTGCTGGGGGAAGGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:565:460/2 +baaaaabbaaaaaaZaabaaaababa^aaaaaa]U +@PATHBIO-SOLEXA2_30LEJAAXX:7:5:1206:149/2 +GCTTGCATCACGGACTGTTCCGGCCTTGAGGCCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:5:1206:149/2 +E[aaaaaaaaaaWabaXaaa_X_aaa^H^QUaa]K |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/SULF2-PRICKLE2_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/SULF2-PRICKLE2_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:1112:1028/1 +CGCCGAGGGCGAGCAGGAGCGAGAGTGTGTCGAGC ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:1112:1028/1 +bbbaaUaaaaaaabWbaaaaaabbaZaaaaZaZaZ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/mcf7_pe_35bp/SULF2-PRICKLE2_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/mcf7_pe_35bp/SULF2-PRICKLE2_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30LEJAAXX:7:28:1112:1028/2 +CCATCTCCTGGTACTGCTGGGCAGAGAGCAGGCTG ++PATHBIO-SOLEXA2_30LEJAAXX:7:28:1112:1028/2 +ZbaZabaaaaaaaaaaa`Z]V^Zaaa^aaaaaaaU |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/APP-AR_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/APP-AR_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:970:1315/1 +TTTGTGTGTTGCCCACTGGCTGAAGAAAGTGACAATGTGGATTCTGCTGATGC ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:970:1315/1 +ababbbaababaaba^aaaaaaabbabaaaaaaaaaaaaaabbbaaabaaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/APP-AR_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/APP-AR_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:970:1315/2 +GGACGGCGGCCGAGGGTAGACCCTTCCCAGCCCTAACTGCACTTCCATCCTTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:970:1315/2 +aaabaaaaabaaaaaaaaaabbaaabbbaaaaaaaaaaaabaaaaaaaaaaa^ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/BC018860-NDRG1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/BC018860-NDRG1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:321:939/1 +TGTGGACCACTTCCACGTTACTCTGCATTTCTTCCTTCCCAAAAAGGTGGGAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:321:939/1 +aaaaaaaaaababaaaaaaa^K\baaaaaaa[E[aa\aaaaaaaaaaa^X[b] |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/BC018860-NDRG1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/BC018860-NDRG1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:321:939/2 +TGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAAGC ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:321:939/2 +baaaaabaaaabbaaaaabbaba^abbbabbbbaaabbaaabaaaaWaaZ\^` |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/BC021729-FRY_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/BC021729-FRY_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:40:1302:1557/1 +CGCGATTTTGGCTCACGGCAAGCTCCACCTCCTAAATGGCTCACGCCATTCTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:40:1302:1557/1 +abaaaaabaaaababaaaaabababaaaaabaaaabaaaaaaaa^ba^a\aa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:91:975:1707/1 +GGAAATGACATTAGAGGAACACTTCAAAGAAACATTAAGAACTTGGATCCCAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:91:975:1707/1 +aOa\aa[SZX`aaaaUaaaJaaaa[K[aZZX]UaaaaaZ^a_[QX_\aabaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:77:805:952/1 +AATGATTATAAATCATCAAGAAGGAGTAGCCTGCCACCTGAACTACTCATAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:77:805:952/1 +abaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_[`aaaaaaaa_]` |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/BC021729-FRY_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/BC021729-FRY_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:40:1302:1557/2 +TCCAAGGCAGGCAGATCAGGAGGTCAGGAGATCGAGACCATCCTGGCTAACAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:40:1302:1557/2 +aabaaaaaWaabaaaaabaaaabababaaaabaaaaaabaaaaabaa^aaa^b +@PATHBIO-SOLEXA2_30TUEAAXX:3:91:975:1707/2 +TCTGGGCCCACATTGATGGGTAGCATGGTTGGCGGCCCTTTCTCCCTGTGCGT ++PATHBIO-SOLEXA2_30TUEAAXX:3:91:975:1707/2 +XaaaaaM[aa`X`aab^HXbaaaaWaaaaaaaaaaaa^^SVabaZababaaaX +@PATHBIO-SOLEXA2_30TUEAAXX:3:77:805:952/2 +CGGCCCTTTCTCCCTGTGCGTGCCAGAAGCAGGTGGAACCGGAGGCTTGATGT ++PATHBIO-SOLEXA2_30TUEAAXX:3:77:805:952/2 +aaaabaaabaaabbaaaaaaaaaaaaaaaaaaaaaaaaaaa_^_aaa`]]_Z^ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/HJURP-EIF4E2_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/HJURP-EIF4E2_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,24 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:72:1274:1895/1 +ACGAGGGACCATCAGTTCCCTGCAAAAAGACCCAGGCGATCAGAACCCCAGGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:72:1274:1895/1 +bbbaaaabbbbbaaaaaaaaabbaaaaaaaaabaaa[Q^abbaaaaaaaa``` +@PATHBIO-SOLEXA2_30TUEAAXX:3:37:371:2034/1 +GTTTTTTCCTTCTCACCATCTTTCTGTGTGCTGTTTTCTTCATTCTGATCATG ++PATHBIO-SOLEXA2_30TUEAAXX:3:37:371:2034/1 +bbbbbbbbbbbbbbabbbbbbbbbbaabaabbbaaabaaaabbaabbaabab^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:96:73:466/1 +TTTTTTCCTTCTCACCATCTTTCTGTGTGCTGTTTTCTTCATTCTGATCATGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:96:73:466/1 +abbaaababbbbabbbaabbaabbbbabbb_X_aaabaaaabbabbbabbbaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:54:166:83/1 +TGTTTTCTTCATTCTGATCATGGTCCCCACTGTCATCATCTTTCAAACTCTCT ++PATHBIO-SOLEXA2_30TUEAAXX:3:54:166:83/1 +baaaabaa\bbaaaaaaaaaZaaa^aaabaabaaZabZaaaaaaaaaaaaaWa +@PATHBIO-SOLEXA2_30TUEAAXX:3:98:145:271/1 +TTTTCTTCATTCTGATCATGGTCCCCACTGTCATCATCTTTCAAACTCTCTTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:98:145:271/1 +aaabababbaabbaabbabbaaabbbbaaaabbbabbabbabaaabaabaaba +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:1745:1639/1 +GTTTTTTCCTTCTCACCATCTTTCTGTGTGCTGTTTTCTTCATTCTGATCATG ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:1745:1639/1 +babbbbbaaababbabaaaaaabaabaaaaaaaMaaaaaaaaabaaaaaaaa[ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/HJURP-EIF4E2_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/HJURP-EIF4E2_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,24 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:72:1274:1895/2 +TGCTGTTTTCTTCATTCTGATCATGGTCCCCACTGTCATCATCTTTCAAACTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:72:1274:1895/2 +bbbaaabbbbbbaaabbbbbbaaaaaabbbaaabaaaaaaaabaaaa`]]aba +@PATHBIO-SOLEXA2_30TUEAAXX:3:37:371:2034/2 +GAGGGACCATCAGTTCCCTGCAAAAAGACCCAGGCTATCAGAACCCCAGGGCT ++PATHBIO-SOLEXA2_30TUEAAXX:3:37:371:2034/2 +babbaaaaaaaaaaabbbbbaaaaaaaaabaaaaaaaaaaaaaaab`U``aaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:96:73:466/2 +AGTTCCCTGCAAAAAGACCCAGGCTATCAGAACCCCAGGGCTCCGGACGCCAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:96:73:466/2 +[ZQ\`aaaaa\aaaaaabbaaaabaaaaa_X]abaaaaaaaaaaaaaaaaaXX +@PATHBIO-SOLEXA2_30TUEAAXX:3:54:166:83/2 +CCATCACGAGGGATGGCACGAGGGACCATCAGTTCCCTGCAAAAAGACCCAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:54:166:83/2 +aaaaaaaaaZaa\aaaababaaaaaabaaaaaaaaaaabaaaMUWaaaaaUaZ +@PATHBIO-SOLEXA2_30TUEAAXX:3:98:145:271/2 +CTCGTGCCATCACGAGGGATGGCACGAGGGACCATCAGTTCCCTGCAAAAAGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:98:145:271/2 +aabaa^abbaaaaabaaaaaaababaaaaaabaaaaXabbbbbabaa^W___a +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:1745:1639/2 +AGGGACCATCAGTTCCCTGCAAAAAGACCCAGGCTATCAGAACCCCAGGGCTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:1745:1639/2 +aaaaaaaaUaaaaaaaaaaaaZaa\_Z_aaaaaa`X`aaaRXR^aXG[V^[V^ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/INPP4A-HJURP_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/INPP4A-HJURP_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:46:530:1413/1 +TCTTCCATACTGTAAGACGTGTTCTCTCCTCTGCGCATGCACTCCAGGGCCTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:46:530:1413/1 +baaa_S_a\ab^Z^aaab^JVVaaa[aW^V_^abLaaaaaabaaaaaa_SZaJ +@PATHBIO-SOLEXA2_30TUEAAXX:3:36:797:1728/1 +AAATAACCTAGCTACACACTTTTAGTTTCCAATTTTTCTAGCATGAAATCACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:36:797:1728/1 +ababaabbbabbbbbbbbbbabbababbbaabbbababaaabbabaaaababa +@PATHBIO-SOLEXA2_30TUEAAXX:3:73:1113:793/1 +GAAATAACCTAGCTACACACTTTTAGTTTCCAATTTTTCTAGCATGAAATCAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:73:1113:793/1 +aaaaabbbbbaaabbbbbbbbbbbaaaaabaaaaaabbabaaabbbaaaaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/INPP4A-HJURP_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/INPP4A-HJURP_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:46:530:1413/2 +ATGCCCGGAAGAATAAGAACGTCGACATTATCTGGCAAGCTGCTGAGAGCTGC ++PATHBIO-SOLEXA2_30TUEAAXX:3:46:530:1413/2 +[aLabbbaaaa_V^aaaaaQU^aLa^Z_^J^aa^S^aaWaaaXa[E[Uaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:36:797:1728/2 +TCACCAGCTGCAAGAGCGCTAAGGACCGTACAGCCATGTCGGTGACACTGGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:36:797:1728/2 +baaaaaabaaaaaaaaaabaaaaaaabbabaaaaaaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:73:1113:793/2 +GCTAAGGACCGTACAGCCATGTCGGTGACACTGGAGCAGTGCCTGATCCTGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:73:1113:793/2 +aabbbaaaabbaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaa`_`aaaa`\ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/PIK3C2A-TEAD1_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/PIK3C2A-TEAD1_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,16 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:48:1022:1308/1 +TTGGAATGAAAATCACGAGATTTCCTTCTGGCAAGAACCTGAATGTGACTAGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:48:1022:1308/1 +bbbbabbabbaaababbbbaabbbbbbbaaaaaaaaaaaaaaaaaabaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:36:333:663/1 +CCGAGACGATCTGGGCTGAGGACATGGCCGCCATGTGCTGCAGGGCCTTATCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:36:333:663/1 +baaaaaaaabbaaaaaaaaaaaaaaaababbaaaaaaaaa_]`aaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:74:156:525/1 +GAAGCTTTCGGCGGCGGCTGAGCCAGCTGAGGGGAAAAATGGCTCGGACTGTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:74:156:525/1 +baaaababaaaaaaaaa^a`__aaZa]_X_`aa^X[aa_O[ZPX[R[KK_[MR +@PATHBIO-SOLEXA2_30TUEAAXX:3:3:1578:1127/1 +CGGACTGTGGCGGCTTCGGCGGCTCAGGGTGTGGTAGAGGGGGAGGCTCAAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:3:1578:1127/1 +aabaaaaaaaaaa^aaaaa]__JXUER]S_OEE[OKUEEUER[[^^HOEEEUE |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/PIK3C2A-TEAD1_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/PIK3C2A-TEAD1_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,16 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:48:1022:1308/2 +TTTCGGCGGCGGCTGAGCCAGCTGAGGGGAAAAATGGCTCGGACTGTGGCGGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:48:1022:1308/2 +bbbbaaaaaaaaaaaaaaaaaaa[^^aa^S^aaa^V_aa`Z[GU]^Z^^V[[G +@PATHBIO-SOLEXA2_30TUEAAXX:3:36:333:663/2 +TTGTGGTAGAGGCGGAGGCTCAGGCAGCTTGAGGTAGGAATGAATTGATAGCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:36:333:663/2 +baaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa`_`a_``aaaaaaaa[ +@PATHBIO-SOLEXA2_30TUEAAXX:3:74:156:525/2 +TGGAATGAAAATCACGAGGCTTCCTTCTGGCAAGAACCTGAATGTGACTAGAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:74:156:525/2 +bbbaaaaaaaaababbaXGXaabbabaaaaaaaaaabbaaaaaaaaaaaaaa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:3:1578:1127/2 +CGCCATGTGCTGCAGGGCCTTATCCTTTGCAGTCTGATCCTTTAGCTTGGAAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:3:1578:1127/2 +aaaabbbaaaaaaaaaabbaaaaaaaabaaaaaaabbaaaaaaaaaaaaaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/RANBP17-DOCK2_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/RANBP17-DOCK2_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,16 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:93:1666:460/1 +GAAGGTCTCAATGTAGAAGGAGTAGTGCTGGTCACCCATCTGGTTTAAGATGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:93:1666:460/1 +aaaaaaaabaaababaabaaaaaaabaaaaaaaaaaaaaaaaaaaaaaabaa_ +@PATHBIO-SOLEXA2_30TUEAAXX:3:4:124:1495/1 +TTGTCTTTGAAGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:4:124:1495/1 +ababbbbbaaaaaabaaaaaaaa_X_^aaaaZ^IZaaaaaaaaaaaba^Z\ba +@PATHBIO-SOLEXA2_30TUEAAXX:3:46:889:124/1 +GCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAGGCCTTCACCTACCACCATA ++PATHBIO-SOLEXA2_30TUEAAXX:3:46:889:124/1 +aaaaaaaa[U^aabbaaaaaaaa][`a_S]_`[XEMGZaaa\[^aaa^S^^JU +@PATHBIO-SOLEXA2_30TUEAAXX:3:35:1057:977/1 +TGCTGGTCACCCATCTGGTTTAAGATGGCTGTCATACATGCCACAAAGTGACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:35:1057:977/1 +aabbbb^baabbbbaaaaabbbbbbbbaaaaaaaaaaaaaaaaaaa]]Zaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/RANBP17-DOCK2_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/RANBP17-DOCK2_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,16 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:93:1666:460/2 +TCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAGGCCTTCAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:93:1666:460/2 +baaaaaaabaaaaaaaaaaaaaaaaabaaaaaaaa`__aaaaa]]`aaaaZaR +@PATHBIO-SOLEXA2_30TUEAAXX:3:4:124:1495/2 +TGCTGGTCACCCATCTGGTTTAAGATGGCTGTCATACATGCCACAAAGTGACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:4:124:1495/2 +UUaaaaaa^aa_U_aWaabba][]aaaabaaaaa^aUKU^bXEXERJ\Uaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:46:889:124/2 +TGGAAGGTCTCAATGTAGAAGGAGTAGTGATGGTCACCCATCTGGTTTAAGAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:46:889:124/2 +aaUaa\HKRGOaaaXGU`_]a`_^Q^W^\Q_a_Z_`[_a^V^aaaaUGRQV_a +@PATHBIO-SOLEXA2_30TUEAAXX:3:35:1057:977/2 +ACCATTGTCTTTGAAGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCT ++PATHBIO-SOLEXA2_30TUEAAXX:3:35:1057:977/2 +aabaabaaaaaaaaabababbaaaaaababaaaaaaaaaaabaaaaaaaaaba |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/RC3H2-RGS3_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/RC3H2-RGS3_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,24 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:37:646:111/1 +AAGGACTCAGATACCCTTTGAAGTCCCACAGTACCCACAGACAGAAGGCAGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:37:646:111/1 +abbaaaaaaaabaaaabbaaabaaabbaaabaaa^babaaaabbbbaabba^b +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:1283:1650/1 +CAGCACACTCTCTTCTTCTGCTCCTGCGAGTGCGCTTCCAAAGTGAATAAGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:1283:1650/1 +aaabaaabababbaabbbaababbabbaaaaaaaaaabaaa^a^aaaaaaaba +@PATHBIO-SOLEXA2_30TUEAAXX:3:17:1054:638/1 +GGTGATGCTGCCAGCTGTTGCTGCTTGGCGATGTTCTCCGACAGGCACCAGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:17:1054:638/1 +abbbbbbbaaaaaaaaaaaaaaaaaaaaa^\^_]`__]`^[^^^^]___[[^[ +@PATHBIO-SOLEXA2_30TUEAAXX:3:51:540:507/1 +TGGCATTGGTTGAGTTGACCGGCCCCATCTCCTGCTGGAGAGAGCCGAAAGGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:51:540:507/1 +aababbbaaaaaaaabababaaaabaaaaabaabaaaaaaaaaaaba\aaaaX +@PATHBIO-SOLEXA2_30TUEAAXX:3:84:152:1144/1 +AAAAATCCAGCCCATTTCTAACTAGAGGACCAGTATATCCTCCGCATTCTGAA ++PATHBIO-SOLEXA2_30TUEAAXX:3:84:152:1144/1 +baaaaaaaaaaaa\aaaabbabaaaaaOaaaaaaaaaaaabaaXEOWaaaZaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:96:1139:137/1 +CTTCTATCCTGGGTGGCATTGGTTGAGTTGACCGGCCCCATCTCCTGCTGGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:96:1139:137/1 +bbbaaaabbaaaaaaaabbaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaZ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/RC3H2-RGS3_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/RC3H2-RGS3_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,24 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:37:646:111/2 +ATTGGTTGAGTTGACCGGCCCCATCTCCTGCTGGAGAGAGCCGAAAGGGTGGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:37:646:111/2 +aaabaababaaababaaabbaaaaaabaaabaabaabaaaaaaaaWaaa^aba +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:1283:1650/2 +AGAGCTGAATTCTGTGCCTCAAAAATCCAGCCCATTTCTAACTAGAGTACCAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:1283:1650/2 +aaaabaaaabbaabbaabbaaaaa^aaaZababaaaabaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:17:1054:638/2 +CTAACTAGAGTACCAGTATATCCTCCGCATTCTGAAAACATTTAGTATTTTCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:17:1054:638/2 +baaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa^Z_aaaaaa_``aaaa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:51:540:507/2 +GCTGCTGGGCCCTCTGCAGATTCTGTAACTGAAAAAAGGCAGAGTGCTTATTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:51:540:507/2 +bbaabaaaabbbaabbaaaaaabbbaaabbaaaaaaaaaaaaaaaaaaaaab_ +@PATHBIO-SOLEXA2_30TUEAAXX:3:84:152:1144/2 +CGGGGGTGATGCTGCCAGCTGTTGCTGCTTGGCGGGGTGCTCCGACCGGCACC ++PATHBIO-SOLEXA2_30TUEAAXX:3:84:152:1144/2 +a^V_aaLaaabaLaaba\a[QK^aa`UIQ^baaa\IZUJ]aaaaZ^HH[aaa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:96:1139:137/2 +TCAGATACCCTTTGAAGTCCCACAGTACCCACAGACAGAAGGCAGAGTGCTTA ++PATHBIO-SOLEXA2_30TUEAAXX:3:96:1139:137/2 +aaaaaabbbabbaaaaaaaabaaaaaaaaabaaaaaaaaaaaaaaaaaaaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/TMPRSS2-ERG_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/TMPRSS2-ERG_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,744 @@\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:70:760:740/1\n+CGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:70:760:740/1\n+aaaZLXXa_[_aaaaWaaaaa^aaaa_]`aaaaaZaaa`]_aaaaaaaaaUGR\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:93:627:338/1\n+TGACCCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:93:627:338/1\n+aaabbabbbbaaaaabaaaaaaaaaaaaaaaaaaaaa`Z_aaaaaaaaaaaa`\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:80:610:176/1\n+AGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:80:610:176/1\n+aaaababbaaaabaaaaaaaaaaaaaaaaaaaaaaa^Z\\aaaaaaa_Z]aaa]\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:66:533:945/1\n+GAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCTT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:66:533:945/1\n+baaabaaaabbaaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaa__]`Z\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:52:63:295/1\n+GGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:52:63:295/1\n+aa\\Laaaaaaaaaaaaabaaaaa^aaXaaaabZ\\^WaaaaaaaZ\\WZ]_a^QQ\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:9:249:1837/1\n+GGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:9:249:1837/1\n+baZaabaaaababaaaaaababa_V\\aaabbaa\\a^Q^aa`_`\\V[UMK^a\\U\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:50:1383:772/1\n+GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:50:1383:772/1\n+aaaaabababaaaaabaaaaaaaaaaaaaaaabaaaaaaabbaaaaaaaaaaX\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:75:1678:1421/1\n+CTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:75:1678:1421/1\n+abaaaaaaa\\aaaaaaaaaaaaaaaabaaW^aaaaW\\baa^aaaaaa][Saaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:15:885:1025/1\n+GGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:15:885:1025/1\n+aaaaaaaaaaabaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:6:362:672/1\n+GCGTTCCGTAGGCACACTCAAACAACGACTGGTCCTCACTCACAACTGATAAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:6:362:672/1\n+aababbbbaaaaabbbaaaaaaaaaaaaaaa```aaaaaaaaaaaaa_]_aa^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:64:1391:490/1\n+CAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:64:1391:490/1\n+abab\\aaaaabaaaabaaabaaaaaaabaaaaaab\\aaLZaa^^aaaaLaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:38:116:785/1\n+GGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCATGAAGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:38:116:785/1\n+a_UUabaaaaaaaZabbbaaaaaaabaaaabbaLaaaWaabaaaaZa[aa\\a_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:4:1499:269/1\n+CGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:4:1499:269/1\n+aabbaaaaaaa\\baMaaaaaaaaaaa_]_aaaaaaaaaaaaaaa\\aZ\\QZ]^Q\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:1:216:647/1\n+GCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGTA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:1:216:647/1\n+bbaa[Z^aXa^Q^aaaaaaaXNaaaaa^QXa\\_UX]aaaMHQ^aaaHJ[S^QH\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:64:863:109/1\n+CTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:64:863:109/1\n+bbbbbbaaaaaaaaaaaaaaaaaaaaaa``_aaaaaaaaaaaaaaaaaaa^[_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:50:1646:1212/1\n+GCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:50:1646:1212/1\n+aaaaaaaaaaaaaaaaaaaaaaaaa`_]aaaaaa__`aaaaa__`\\__^W`RR\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:35:479:925/1\n+GAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:35:479:925/1\n+bbaabbaaaaabaaaabbbaabaabaaaaaaaaaabaaaaabaabaabaaa^Q\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:45:229:1247/1\n+CTAAGCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:45:229:1247/1\n+aaaaababa^aaabaaabaaaa^abaaaaabaaX[`WaaaaaaaU[aaaaaZO\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:36:356:614/1\n+CCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:36:356:614/1\n+abaabbabaaaababbabbbbaaaaabbaabaaaaaaaaaaaaaabaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:40:1488:108/1\n+CGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:40:1488:108/1\n+bbbaaaaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa[X[`X[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:89:524:344/1\n+GGAGG'..b'aaaaaaLW^aaaaaaLaaaaaaZaaaaaaaaaaaaaaaXE\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:9:701:1223/1\n+GTTGAGACAGCCAATCCTGCTGAGGGACGCGAGGGCTCATCTTGGAAGTCTGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:9:701:1223/1\n+aaaaaaaaba^VXabbaaaaaa^V[a`J`bUEX`_`aaaa[JS]WSaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:27:1728:775/1\n+GTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:27:1728:775/1\n+aUaaaaa\\aaaWaaab`KHQVQ\\_S_aa_JXSa[[`aaaaaaXXaaa]Z_^Q[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:38:616:1973/1\n+GCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:38:616:1973/1\n+aaaaaaaaaaaabaaaaaaaaaaaaaaaaaaaa___aa_[]]__\\Za^Q_aZa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:45:1687:1005/1\n+GAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCTT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:45:1687:1005/1\n+abbabaaababbaaaaaaaaaabbaaa^a_[[aaaaaaaaaaaaa_J_^[Va[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:4:1196:1118/1\n+TTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:4:1196:1118/1\n+bbabbaaaaabbbbbaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:41:1537:842/1\n+TAAGCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGCGCGCTGCGTG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:41:1537:842/1\n+aaaaUXLaa^aaaXZaWaOaaaaaWaUEUU_a^Waa^baOaLaLaLOLOaLLL\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:60:936:619/1\n+TGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTAGGAAGTCTGTCC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:60:936:619/1\n+bbaaa_Z_[[aaU[U_aaaaaaaaabLaaLaaaaXKX`[`JaXMGKV_aa^[K\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:22:1310:1233/1\n+CCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:22:1310:1233/1\n+bbaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_`_a^X[^__`aaaa[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:86:917:29/1\n+GGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:86:917:29/1\n+aaabaaaaaaaaabaaaaaaaaaaaaaaaaaaa]``aaaaaaaaaaaaaa_\\^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:72:1178:1343/1\n+CACACTCAAACAACGACTGGTCCTCACTCACAACTGATAAGGCTTCCTGCCGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:72:1178:1343/1\n+KZ\\\\a^aa[GXaaaaaa`Z`ZaaaaaaaabLVQVaaaaZaaaaZEURER\\^aW\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:79:1659:1749/1\n+AAGCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:79:1659:1749/1\n+aabaaaaaaaaaabaaaaaaaaaaaaaaaaaaaaa`__aaaa]__\\a_JZ^_^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:24:1462:302/1\n+CGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:24:1462:302/1\n+aaaaabbaaaabbbbbaaaabaabaaabbbbaaaaaaaaaa_[`aaa_V^aaX\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:28:1231:968/1\n+GGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:28:1231:968/1\n+bbaabbaaaabbaaaaaaabbaaaaabaaaaaaaaaaabaaaaaaaaaaaaa_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:55:369:1726/1\n+TTACATTCCATTTTGATGGTGACCCTGGCTGGGGGTTGAGACAGCCAATCCTG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:55:369:1726/1\n+aaa^aa^ababaaabaa^QZaabaa]__aaaaaaMaaaaaa[[H`_[aaa^__\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:7:1368:717/1\n+CGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCTTATCA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:7:1368:717/1\n+aaaaaaabaaaaaaaaaa^_^aaaaaaaaaaaaaaaaZaaaaaaaaURZ[[a^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:48:1643:1117/1\n+CTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:48:1643:1117/1\n+aaaaaaaaaaaaaaaaaaaaaaaaaaaa`__]]aaaaaaaaaaaaaaa`_`_^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:8:1732:1312/1\n+GAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:8:1732:1312/1\n+aaaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaa^_]]aaaa_]`aaaaU\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:12:1770:1382/1\n+CGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:12:1770:1382/1\n+aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_]_aaaa`[]aaXXUaaaaaX]_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:85:88:633/1\n+TTTTGATGGTGACCCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:85:88:633/1\n+aababbbbabaaababbbababbaaaaaaabaaaaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:81:768:1069/1\n+TTCAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGACTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:81:768:1069/1\n+aUG[S`aUKXaaaZaaaZaaa^aaaaWOKG\\QQ^]Xaa^Q\\]aWaaXGMaaL[\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/TMPRSS2-ERG_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/TMPRSS2-ERG_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| b'@@ -0,0 +1,744 @@\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:70:760:740/2\n+TTGAGACAGCCAATCCTGCCGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:70:760:740/2\n+aaaaaaaaaaaaaaab_J_aaaaababbaaaaaaaaaa^[_aaaaaaLaa^a_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:93:627:338/2\n+AGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:93:627:338/2\n+bbbaaaabbbabaaaabbaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaa^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:80:610:176/2\n+GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGA\n++PATHBIO-SOLEXA2_30TUEAAXX:3:80:610:176/2\n+bbbbbaaaabaaabaababbbbbaaaaaaaaaaababaaaaaaaaaaaaaaaU\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:66:533:945/2\n+TGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:66:533:945/2\n+bbaaaaaaaaabaaabaaaaaaaaabaaaaaaaaaaa^[^aaaaaaaaaaaa_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:52:63:295/2\n+GCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGACTGGCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:52:63:295/2\n+aaaaaaaZaa\\VZWa\\WbaWaaQUIUUKU^ZaZWaaWZRKXaEEUaaaHHEPK\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:9:249:1837/2\n+TTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGCAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:9:249:1837/2\n+baaa_U^V^b^JQ[aaaabb^Z^a^L_aaaaaab^V[EU^aaa[EM_\\aa^X^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:50:1383:772/2\n+CGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:50:1383:772/2\n+aaaabbaaaaaaaaaaaababaabbbaaabbaaababbaaaaaaaaaaaaKE[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:75:1678:1421/2\n+GGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:75:1678:1421/2\n+aaaaaaaaaaaaaaaaaaaaaabaabaaa^aaabaaaaaaaaa\\aaaZaaaa\\\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:15:885:1025/2\n+TGGCTGGGGGTTCAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:15:885:1025/2\n+aaabaaaaaaaZEXaaaaabaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaa_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:6:362:672/2\n+CGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGTAAAC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:6:362:672/2\n+aaaaaaaaaaaaabaaaaaabaaaaaaaaaaaa`__^^^aaaaa[KXERKX^K\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:64:1391:490/2\n+CCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTCCATAGTCGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:64:1391:490/2\n+aaaa^bbaaababaaaaabaaWabZaaaaaabaaa\\aaaaaZ^aaaabbaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:38:116:785/2\n+CCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:38:116:785/2\n+a^V^aaaaaaaa`S_]_aa\\aaa_[Mabaaaa\\aaaaaaaaabaaaaVHX[aa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:4:1499:269/2\n+TGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:4:1499:269/2\n+aaaaaaaaaabaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_]]aa^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:1:216:647/2\n+GGTTGAGACAGCCAATCCTGCTGAGGGACGCGTCGGCTCATCTTGGAAGTCTG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:1:216:647/2\n+X_aaLWaabZaaaa^aaaabbabaaa``_aaaVHXabaaaaWaaa[Q^XG[aV\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:64:863:109/2\n+GCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:64:863:109/2\n+aaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaa`_`aaaaaZ\\^[K[^[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:50:1646:1212/2\n+TGACCCTGGCTGGGGGTTGAGACAGCCAATCCTGCCGAGGGACGCGTGGGCTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:50:1646:1212/2\n+aaabbaaaaaaaaaaaaaaaaaaaaaaaaaaa_[_a`_`a^^_aa_^_a^[[X\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:35:479:925/2\n+GCACACTCAAACAACGACTGGTCCTCACTCACAACTGATAAGGCTTCCTGCCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:35:479:925/2\n+bbbaaabbaaaaaaaaaaaaaaaabaaaaaaaaabaaaa\\aaaaaaba\\aabb\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:45:229:1247/2\n+GGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:45:229:1247/2\n+bbbb^H[abaaaabaaaaabaaaaaaaaaaababaaaaababaaabVQ__]]a\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:36:356:614/2\n+GGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:36:356:614/2\n+aaaaaababababaaaaaababaaaaaaabaaaaaaaaaaaaaababaa^aaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:40:1488:108/2\n+CGATGGTGACCCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:40:1488:108/2\n+bbbabaaaaaaaaaaaaaaaaaabaaaaaaabaaaaaaaaaa`_]aaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:89:524:344/2\n+TTGAG'..b'aa\\a^abbbaaaaaaaaababaaaaaaaaaaaaaaaaa[H\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:9:701:1223/2\n+CAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:9:701:1223/2\n+aaaa^aaaaZaabaaaaaaaaaaZaabaaaaUabaaaaaa\\[H^aba__]_`V\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:27:1728:775/2\n+CTAAGCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:27:1728:775/2\n+aZaaaa^aaaabaaaZaaaaabaa^a^a\\aaaaaaaaaLaa\\_JUUZIQbWOM\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:38:616:1973/2\n+GTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:38:616:1973/2\n+aaaaaaababaaaaZabbaaa^aaaaaabbbaaaaaaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:45:1687:1005/2\n+CCCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:45:1687:1005/2\n+abbaababaaaabbaaaaaaabbaaabaaaaabbabaaaaaaaaaaaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:4:1196:1118/2\n+CGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:4:1196:1118/2\n+aabaaaaaaabaaaabaaaaaaaaaaaaabaZaaaaaa^ZMXaaaaaZaa[V[\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:41:1537:842/2\n+GTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:41:1537:842/2\n+aMabaaaW^abaaaa\\aaabbbbabbabaa^aaa^`J_^bWaaa^\\ba\\aaZL\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:60:936:619/2\n+TAAGCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:60:936:619/2\n+aaaaaabaa]M`aaaaaaaaaaaaaa^aa\\a_]`aaaaa`S`a[ZVaaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:22:1310:1233/2\n+AGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:22:1310:1233/2\n+aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa^V[aaaaaa^Z\\XOX]X\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:86:917:29/2\n+GGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:86:917:29/2\n+aaaaaaaaaaaaaaaaabbaaaaaaaaaa_[_a_Z`aaaaa\\^^aaaaa^V^U\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:72:1178:1343/2\n+CGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCCGGTGCGCGGCGCC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:72:1178:1343/2\n+aaaaaZaa[QXaaa[KKaaaaaa^aaaZaaaaZa^^aL[HV_JRKUaaWaUSS\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:79:1659:1749/2\n+TTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:79:1659:1749/2\n+aaaaaaaaabbaaabbaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa__`aaa_\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:24:1462:302/2\n+TGACCCTGGCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:24:1462:302/2\n+abbbabbbabbabbbaabbb_[_^abaXaaaaaaaaaaaaaaaaaaX_`aaaX\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:28:1231:968/2\n+CGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:28:1231:968/2\n+aaaaabababaaaaaaaabaaaaaaaaaaa_^^aaaaaaaaa_M_aabaa[]`\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:55:369:1726/2\n+GGAGGCGGAGGGCGAGGGGCGGCGAGCGCCGCCTGGAGCGCGGCAGGGAGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:55:369:1726/2\n+aaaababaaabbb^Q^baa[Uaab\\ZZUaaaaZ]_]]VQ^_Z^_Q^XERaa^E\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:7:1368:717/2\n+TTGAGACAGCCAATCCTGCTGAGTGACGCGTGGGCTCATCTTGGAAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:7:1368:717/2\n+aaaaaaaaaaaaaaabbbaaaa^Q^aaaaaaaaaaaaaaaaaa[^^aaaaaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:48:1643:1117/2\n+GAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:48:1643:1117/2\n+aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa__`aaaaaaaU_ZR[aaaa\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:8:1732:1312/2\n+TTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTC\n++PATHBIO-SOLEXA2_30TUEAAXX:3:8:1732:1312/2\n+aaaabaaabbaabbaaaaaaaaaaaaaaaaaaa^aaaaababaa^[^__aa\\\\\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:12:1770:1382/2\n+GGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:12:1770:1382/2\n+aaaaaaaaaabaaabaaaaaaaaaaaaaaaaaaaaaaaaaa__`aaaa^[^XU\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:85:88:633/2\n+GGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAGGAAGCCTTATCAG\n++PATHBIO-SOLEXA2_30TUEAAXX:3:85:88:633/2\n+aa^aaabaaabaabaaaaaaabbbabbaaaaaaaaaa__`aaa_]_a_\\^aa^\n+@PATHBIO-SOLEXA2_30TUEAAXX:3:81:768:1069/2\n+CTAAGCAGTAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCT\n++PATHBIO-SOLEXA2_30TUEAAXX:3:81:768:1069/2\n+aa^KV[aaPE[aaaUERaaaZH[aaLUPERH^^GGK[UV^[^a_^V[]aaaaa\n' |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/TYMP-SCO2_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/TYMP-SCO2_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:63:1353:655/1 +CTGGCCCTGCCCACCTGTCTCTGCAGGGCCCTGCCTTGACAAAAGCCAGGACC ++PATHBIO-SOLEXA2_30TUEAAXX:3:63:1353:655/1 +aaaaaaaabaaaaaabbababa\^aaaaabbaaaaaabaaaaaaaaabaa^aZ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/TYMP-SCO2_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/TYMP-SCO2_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,4 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:63:1353:655/2 +GCGCCCGGGAGCAGGAGGAGCTGCTGGCGCCCGCAGATGGAGCATCAGATCCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:63:1353:655/2 +aaa^aaXEXaaaaaaa^aaaaaaabaa^abbaaaWaWaZXGXaaaaaaZaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/USP10-ZDHHC7_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/USP10-ZDHHC7_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:1485:1153/1 +GCAGCCGTCACGGATGAACCAGACCCGGTCAGCCACGTCAGCCTCGGAGGAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:1485:1153/1 +aaaaabaaaaaaaaaaaaaa``_aa``^^^_^^`]_```_^\^^[^XEZXOXZ +@PATHBIO-SOLEXA2_30TUEAAXX:3:84:1623:1043/1 +AGCCGTCACGGATGAACCAGACCCGGTCAGCCACGTCAGCCTCGGAGGAGGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:84:1623:1043/1 +abaaaaabbaaaaaaaaaaaaaaaaaaaaaa^aaaZ^aa^XRXaaaaUa[IZU +@PATHBIO-SOLEXA2_30TUEAAXX:3:94:1029:1011/1 +GGCGGGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:94:1029:1011/1 +aaaaaaa`Z`aaaaaaaaaaaaaaaaaaa`[__\\^^VXEU_`_RMXX\ZHXX |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/USP10-ZDHHC7_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/USP10-ZDHHC7_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,12 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:1485:1153/2 +CAGCCGGAGGATCGCGGAGTCCCAATGAAACGGGCAGCCATGGCCCTCCACCG ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:1485:1153/2 +aaaaaaaaaaaaaaaaaaaaaaaaaaa_``_``^RRXUXZ[X[[[XOX[ERER +@PATHBIO-SOLEXA2_30TUEAAXX:3:84:1623:1043/2 +GGCGGGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:84:1623:1043/2 +baaaaaba\aaaaaaaaaaabaWa[V^^aaL^aaaaa\_]Xa]__XV^aa^aa +@PATHBIO-SOLEXA2_30TUEAAXX:3:94:1029:1011/2 +TCGGAGGAGGAGGACGATGAAGAGTCATAGTTGTCATTTTCAGCCAGGAGAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:94:1029:1011/2 +baaaaaaaaaaaaaaaaaaaaaaabaaaaaaaaaaaaaaaaaaa_\^_^_aaZ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/VWA2-PRKCH_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/VWA2-PRKCH_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| b |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:43:285:459/1 +TCCCACGTGGCAGCCGCGCCCCGGGCGCCCCTCCTGTGATCCCGTAGCGCCCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:43:285:459/1 +aaababaaaabaaaaa_Z`bbaaaaaaaaaaaabaaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:13:1139:1547/1 +AGCGCCCCCTGGCCCGAGCCGCGCCCGGGTCTGTGAGTAGAGCCGCCCGGGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:13:1139:1547/1 +aaaabaaabba\aaaaa^\aaaaaaaaabaaaWUaaa\abaaaaa\Z^aaaaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/VWA2-PRKCH_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/VWA2-PRKCH_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,8 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:43:285:459/2 +TAAAATGTTTGAAGATCCGGTCTCTCTGGAGAGTAGCTCTGGAAAACAGGAAA ++PATHBIO-SOLEXA2_30TUEAAXX:3:43:285:459/2 +baaa^baabaababbbbbababbabbaaabaaabbabbabaaaaaaaaaaaa_ +@PATHBIO-SOLEXA2_30TUEAAXX:3:13:1139:1547/2 +ATTGATCTGGTGGACTCGCCTTCGCATAGCCCTTTGGCGCTTCCTGGTAAAAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:13:1139:1547/2 +Wabba\aaa^H^aaabaaaaaaaaaa_J_aNZ^[[_ZZaXJH^Q^\IVH[aZ[ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/ZDHHC7-ABCB9_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/ZDHHC7-ABCB9_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,64 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:573:1783/1 +CTGCGGCATGATCTGTGCTGTCATGACGTGGCTTCTGGTCGCCTATGCAGACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:573:1783/1 +aaaaaaa\aaaabaaaaaaaaa^aaaaaaaaaaaZXXXEXX]aaaaaZS]a\U +@PATHBIO-SOLEXA2_30TUEAAXX:3:13:326:121/1 +GGCTGCGGCATGATCTGTGCTGTCATGACGTGGCTTCTGGTCGCCTATGCAGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:13:326:121/1 +bbbbaaaabbaaaaaaaaaaaaaaaaaaa`__aaaaaaa^^_aa^Q^_]_Z^[ +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:576:1681/1 +CGCTGCGCCGCTGCAAGGTCGGAGCTGAGACTGGCGTGCCTTGAGACAGGCTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:576:1681/1 +aababaaabbaaaabaaaaaaaaaaaaaaaaaaaaaa^^[aaaaaaaaa^X^X +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:668:1831/1 +TGCTGTCATGACGTGGCTTCTGGTCGCCTATGCAGACTTCGTGGTGACTTTCG ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:668:1831/1 +aaaaaaaaaaaabbaaaaa__]`]`aa^S^aaXEX_`aaaaaa^[[[^__a]U +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:1105:1973/1 +CGGTCCAGGTGGCTGAAGATATAGATGGCCGTGGTCACGCAGATGTCCACACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:1105:1973/1 +bbabbaaaaaaaaaaaaa_V^aabbaaaaaaaaaaaaaaaaa__]a[[[^^a^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:647:325/1 +GCAGACTTCGTGGTGACTTTCGTCATGCTGCTGCCTTCCAAAGACTTCTGGTA ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:647:325/1 +aaaaaabbaaaaaabaababababaaaaaaaababaaaabbaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:512:1173/1 +CAGGTTGTAGCTCACGGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:512:1173/1 +aaaaaabaaaabaaaabaaabaababaaaa\aababababaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:89:1268:572/1 +TCGCCTATGCAGACTTCGTGGTGACTTTCGTCATGCTGCTGCCTTCCAAAGAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:89:1268:572/1 +aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa``_Z_aaaaaaaaaa_^^aaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:38:1633:1991/1 +GGTGACTTTCGTCATGCTGCTGCCTTCCAAAGACTTCTGGTACTCTGTGGTCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:38:1633:1991/1 +bbaaabbbbaaabaaaaaaaaaaaaaaaaaaaaaaaa___aaaaaaaaaa_^X +@PATHBIO-SOLEXA2_30TUEAAXX:3:76:1226:1886/1 +TGGAGGTGGGCGGGTGCTGAAGGCCAGGTTGTAGCTCACGGGGGCAAGGCCAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:76:1226:1886/1 +aaaaaa^aZaabbaa\aabaaaaaaaa^H^aaaaabaaaaaXa^aaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:74:1204:1439/1 +CATGATCTGTGCTGTCATGACGTGGCTTCTGGTCGCCTATGCAGACTTCGTGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:74:1204:1439/1 +babbabbbbaabbabaaaabaaabbaaaaZaaaaaaaaaaaaaaaaaaaaaa` +@PATHBIO-SOLEXA2_30TUEAAXX:3:58:213:1628/1 +TGGGCGGGTGCTGAAGGCCAGGTTGTAGCTCACGGGGGCAAGGCCATCATCAT ++PATHBIO-SOLEXA2_30TUEAAXX:3:58:213:1628/1 +ababbaaaaabbaaaaaabaaaaaaaaabbaaaaaaaaaaaaaaaaaaaaaa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:2:627:209/1 +TTCGTCATGCTGCTGCCTTCCAAAGACTTCTGGTACTCTGTGGTCAACGGGGT ++PATHBIO-SOLEXA2_30TUEAAXX:3:2:627:209/1 +bbaaabbaaaaaaaaaaaaaaaa__`aaaaaaaaaaaaaaa__`_````_^^[ +@PATHBIO-SOLEXA2_30TUEAAXX:3:20:978:442/1 +CCTGCACAGTGAAAACTGGGCTGGACCCAACCCTTGTGGGCATTTGTGGTGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:20:978:442/1 +aaabaabaaaabaabaaaaaabaaaabbbabaaaaaaaaaaaaaaaaaaaaab +@PATHBIO-SOLEXA2_30TUEAAXX:3:85:572:390/1 +CAGGTTGTAGCTCACGGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:85:572:390/1 +aaaaaaaababbaabaaaaaabaabbaabaaababaaaaaaaaabbaaaabaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:73:901:1886/1 +CTATGCAGACTTCGTGGTGACTTTCGTCATGCTGCTGCCTTCCAAAGACTTCT ++PATHBIO-SOLEXA2_30TUEAAXX:3:73:901:1886/1 +babaaaaaaabaaaaaaabbaaabaaaaaaaaaaaaaaaaaaaaaaaaabbaa |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/ZDHHC7-ABCB9_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/ZDHHC7-ABCB9_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,64 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:573:1783/2 +GGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGGCAGGGTCGGTGAGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:573:1783/2 +aaaaa_KQ\aaaaaaaa`U`b`]_S_````]_aa^Q[`^V[a_]_a]SZHX[G +@PATHBIO-SOLEXA2_30TUEAAXX:3:13:326:121/2 +GGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGGCAGGGTCGGTGAGCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:13:326:121/2 +aaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa^[[a[R[U[XO +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:576:1681/2 +TCTGTGGTCAACGGGGTCATCTTTAACTGCTTGGCCGTGCTTGCCCTGTCATC ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:576:1681/2 +baaaaaaaaaaaaaaaaaaaaaaaaaaaabaaaaaaaaaaaaaaaaaaaa_]` +@PATHBIO-SOLEXA2_30TUEAAXX:3:1:668:1831/2 +CAGGTTGTAGCTCACGGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:1:668:1831/2 +aZaaaaaaaaaa_Z_aaaaaaaaaab^Q^`]_^V[_[GZEUX[a[MHX^XEUK +@PATHBIO-SOLEXA2_30TUEAAXX:3:33:1105:1973/2 +CCCTGTCATCCCACCTGAGAACCATGCTCACCGACCCTGCCTGGCCTCGCCCT ++PATHBIO-SOLEXA2_30TUEAAXX:3:33:1105:1973/2 +bbbbbbbaaabaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa_Z^aaaaaaaa_ +@PATHBIO-SOLEXA2_30TUEAAXX:3:7:647:325/2 +CCGCATCCTGCTGGTTGGAGGTGGGCGGGTGCTGAAGGCCAGGTTGTAGCTCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:7:647:325/2 +aaaaaabaaaaaaaaabaabaabaaaabbaaaaaaabaaaa[aaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:512:1173/2 +ATGATCTGTGCTGTCATGACGTGGCTTCTGGTCGCCTATGCAGACTTCGTGGT ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:512:1173/2 +aaaaaaaaaabaaaaaaaabababaaaaaaaababaaaaaaaaaabbaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:89:1268:572/2 +CGCATCCTGCTGGTTGGAGGTGGGCGGGTGCTGAAGGCCAGGTTGTAGCTCAC ++PATHBIO-SOLEXA2_30TUEAAXX:3:89:1268:572/2 +aaaaaabaaaaaaaaaaaaaaaaaaaaaaaa`[^^aaa_^__^^__``_`_`` +@PATHBIO-SOLEXA2_30TUEAAXX:3:38:1633:1991/2 +GAAGGCCAGGTTGTAGCTCACGGGGGCAAGGCCATCATCATCCACAGGGCGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:38:1633:1991/2 +bbabbbaaaaaaaaaaaaaaaaaaaa`Z`aaaaa_`_aa`_`^V^Z__^V[M[ +@PATHBIO-SOLEXA2_30TUEAAXX:3:76:1226:1886/2 +AGACTTCGTGGTGACTTTCGTCATGCTGCTGCCTTCCAAAGACTTCTGGTACT ++PATHBIO-SOLEXA2_30TUEAAXX:3:76:1226:1886/2 +aaabbabaaabaaaaabaaaaaaaabaaaaabbaaabaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:74:1204:1439/2 +TTGTAGCTCACGGGGGCAAGGCCATCATCATCCACAGGGCGAGGCCAGGCAGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:74:1204:1439/2 +aaaaaabbabaaaaaabbbbabaaabaaababaaaaaabbaaaabaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:58:213:1628/2 +TGGCTTCTGGTCGCCTATGCAGACTTCGTGGTGACTTTCGTCATGCTGCTGCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:58:213:1628/2 +aabbaaaaaa^aaaa\aabaaaaaabbaaaaaaaaaaaaaa_S_aaWaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:2:627:209/2 +CCGCTGCAAGGTCGGAGCTGAGACTGGCGTGCCTTGAGACAGGCTGGGGGAAA ++PATHBIO-SOLEXA2_30TUEAAXX:3:2:627:209/2 +aaaaaaaaaa```a`__`aaaaa```a`^[^^^^_XU[XXU[^XUPEXXEKXU +@PATHBIO-SOLEXA2_30TUEAAXX:3:20:978:442/2 +TCCCACCCGCGCTGCGCCGCTGCAAGGTCGGAGCTGAGACTGGCGTGCCTTGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:20:978:442/2 +baaaabbaaaaaaabbaaaaabaaaaa^aaaaaabb^bababbaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:85:572:390/2 +TGCTGTCATGACGTGGCTTCTGGCCGCCTATGCAGACTTCGTGGTGACTTTCG ++PATHBIO-SOLEXA2_30TUEAAXX:3:85:572:390/2 +a^a\\Wa^baaaaaaaaaaaabZI\aaaaaaaaaaaaaaaa^aa\aaaaaaa^ +@PATHBIO-SOLEXA2_30TUEAAXX:3:73:901:1886/2 +GTTGGAGGTGGGCGGGTGCTGAAGGCCAGGTTGTAGCTCACGGGGGCAAGGCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:73:901:1886/2 +baaaaaaaaaaaaaaaaaabaaaaaaaaaaaaaaaaaaaaaaaaaaa`]]aa^ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/ZNF649-ZNF577_1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/ZNF649-ZNF577_1.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,36 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:1636:1302/1 +AGGTACTTCTTACTCCACAGTCCATACACTTGCCACCTGGCTAAAATTATTTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:1636:1302/1 +abaaaaaabaaabababaabbbaababaaaaabaabaaababaaa^aaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:89:916:968/1 +GCTAGCAACTCTAGTATGTTCTCTCTCTTCTGTCTATTCTGGGCCTTCCCAGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:89:916:968/1 +abaaabaaabaabbaabaab^aabaaabbaabbabaabbababbaaaaaaaLa +@PATHBIO-SOLEXA2_30TUEAAXX:3:79:83:1163/1 +CTCATTGTACATCACAGAACTCACACGGGAGAGAGACCCTATGGCTGTGATGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:79:83:1163/1 +baaabbbbbaaaaaaaaaaabbbbbabaababbaaaabaaaaaaaa`UZU]Z\ +@PATHBIO-SOLEXA2_30TUEAAXX:3:30:232:643/1 +TCTCAGGTCAAGCTACCACTGGAAATGATGATCTTCCCCAGCCTGGAAGCTCC ++PATHBIO-SOLEXA2_30TUEAAXX:3:30:232:643/1 +abbbaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:20:1494:1497/1 +TCTGTCTATTCTGGGCCTTCCCAGAAGTGGTGGTCAGGTATCATCTCAGGTCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:20:1494:1497/1 +aaaaa^aaaaUaZSV^aa\aaZ_W`^VS[aaa[GUKU[KUXER[[M_[[XMXX +@PATHBIO-SOLEXA2_30TUEAAXX:3:51:343:357/1 +TCTCTTCTGTCTATTCTGGGCCTTCCCAGAAGTGGTGGTCAGGTATCATCTCA ++PATHBIO-SOLEXA2_30TUEAAXX:3:51:343:357/1 +aaaaaabbbabb]U]aaaaaaaaaaaaaaaa^H^aVV[Wa\aa_S]aaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:85:776:696/1 +CTCATTGTACATCACAGAACTCACACGGGAGAGAGACCCTATGGCTGTGATGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:85:776:696/1 +abaaabbbbaaaaaaaaaaaabbaaaaaaaaaaaaaaaaaaaaaaa[KZQ[XV +@PATHBIO-SOLEXA2_30TUEAAXX:3:88:32:1594/1 +TGGGAAAGCCTTCCTTACAAAGACAATGCTCATTGTACATCACAGAACTCACA ++PATHBIO-SOLEXA2_30TUEAAXX:3:88:32:1594/1 +bbaaaaaabbabbbaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa` +@PATHBIO-SOLEXA2_30TUEAAXX:3:35:417:135/1 +AACCCTATAAATGCAGTGACTGTGGGAAAGCCTTCCTTACAAAGACAATGCTC ++PATHBIO-SOLEXA2_30TUEAAXX:3:35:417:135/1 +aaaabbaaaaabbaaaabbabaaaaaabaaaaaaaaaaaaaaaaaaaaaaaa_ |
| b |
| diff -r d85dea371064 -r b9877fa1159a tests/vcap_pe_53bp/ZNF649-ZNF577_2.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/vcap_pe_53bp/ZNF649-ZNF577_2.fq Tue Sep 12 13:57:02 2017 -0400 |
| [ |
| @@ -0,0 +1,36 @@ +@PATHBIO-SOLEXA2_30TUEAAXX:3:92:1636:1302/2 +CAGAAGTCAGGACTCATTAGACATCAGAAAATTCACTCAGGAGAGAAACCCTA ++PATHBIO-SOLEXA2_30TUEAAXX:3:92:1636:1302/2 +aaaaaaOaabaaaaaaaaaaaaaaaaaababaaabaaaaaaaaabaZaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:89:916:968/2 +ACAATGCTCATTGTACATCACAGAACTCACACGGGAGAGAGACCCTATGGCTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:89:916:968/2 +aaabaaaaaaa\aWaababaaaabaaababbaabaaaaaaWaaaaaaaWabaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:79:83:1163/2 +GCAACTCTAGTATGTTCTCTCTCTTCTGTCTATTCTGGGCCTTCCCAGAAGTG ++PATHBIO-SOLEXA2_30TUEAAXX:3:79:83:1163/2 +aaaaaabaaaaaaaaabbbabbbbbbbbbbb^abbaaaabbbbbaaaaaaaaa +@PATHBIO-SOLEXA2_30TUEAAXX:3:30:232:643/2 +AGACATCAGAAAATTCACTCAGGAGAGAAACCCTATAAATGCAGTGACTGTGG ++PATHBIO-SOLEXA2_30TUEAAXX:3:30:232:643/2 +aaaaaaaaaaaaaaaaaabaaaaaaaaaaaabbaaaaaaaaaaaaaaaaaaa` +@PATHBIO-SOLEXA2_30TUEAAXX:3:20:1494:1497/2 +CATGATGCCCTCACCAAGTTGGAACAAGGAGAACCACTATGGACACTAGAAGA ++PATHBIO-SOLEXA2_30TUEAAXX:3:20:1494:1497/2 +[EOaaaZaaaZaa_Q_aaaaaXaaaaaa\a_X`^^QX_aaa_]]aa^^^V[_Z +@PATHBIO-SOLEXA2_30TUEAAXX:3:51:343:357/2 +TTCCTTACAAAGACAATGCTCATTGTACATCACAGAACTCACACGGGAGAGAG ++PATHBIO-SOLEXA2_30TUEAAXX:3:51:343:357/2 +aaaaaaaaaaaaa`U]aabbaaaaa_Z_aaaaaa`S]aa[Z^aaaaaaaa_XS +@PATHBIO-SOLEXA2_30TUEAAXX:3:85:776:696/2 +AGCAACTCTAGTATGTTCTCTCTCTTCTGTCTATTCTGGGCCTTCCCAGAAGT ++PATHBIO-SOLEXA2_30TUEAAXX:3:85:776:696/2 +aaaaaabbaaaaaaaabbbbbbbbbbbbbbbaaabbaaaaaaaaabaa^Z^aa +@PATHBIO-SOLEXA2_30TUEAAXX:3:88:32:1594/2 +CTCTCTCTTCTGTCTATTCTGGGCCTTCCCAGAAGTGGTGGTCAGGTATCATC ++PATHBIO-SOLEXA2_30TUEAAXX:3:88:32:1594/2 +bbbabbbbbbbbbbaaabbaaaaaaaabb`X^MEZaaaaa^XXG[[MRXXEXX +@PATHBIO-SOLEXA2_30TUEAAXX:3:35:417:135/2 +TCCTTCTTCCATTACTGAAAATGTCTTGTTCCTATAGGCCAGAACCTCAAATA ++PATHBIO-SOLEXA2_30TUEAAXX:3:35:417:135/2 +aabbbaaaaaabbaaaaaaaaaaabbbbbaaba^aaabbaaaaaaaaa_[`aa |