| Previous changeset 13:850f3679b9b4 (2019-08-30) Next changeset 15:5ec75f5dae3c (2020-08-05) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e" |
|
modified:
macros.xml tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| b |
| diff -r 850f3679b9b4 -r b9e04854e2bb macros.xml --- a/macros.xml Fri Aug 30 08:09:05 2019 -0400 +++ b/macros.xml Thu Nov 28 15:56:07 2019 -0500 |
| b |
| @@ -1,8 +1,9 @@ <macros> <!-- REMEMBER to bump the version of rna_star_index_builder_data_manager whenever you make changes to the following two version tokens! - The data manager uses a symlink to this macro file to keep the versions in - sync. --> + The data manager uses a symlink to this macro file to keep the STAR and + the index versions in sync, but you should manually adjust the +galaxy + version number. --> <!-- STAR version to be used --> <token name="@VERSION@">2.7.2b</token> <!-- STAR index version compatible with this version of STAR @@ -18,6 +19,7 @@ <requirements> <requirement type="package" version="@VERSION@">star</requirement> <requirement type="package" version="1.9">samtools</requirement> + <yield /> </requirements> </xml> |
| b |
| diff -r 850f3679b9b4 -r b9e04854e2bb tool_data_table_conf.xml.sample --- a/tool_data_table_conf.xml.sample Fri Aug 30 08:09:05 2019 -0400 +++ b/tool_data_table_conf.xml.sample Thu Nov 28 15:56:07 2019 -0500 |
| b |
| @@ -1,6 +1,6 @@ <tables> <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> - <columns>value, dbkey, name, path, with-gtf, version</columns> + <columns>value, dbkey, name, path, with_gene_model, version</columns> <file path="tool-data/rnastar_index2_versioned.loc" /> </table> </tables> |
| b |
| diff -r 850f3679b9b4 -r b9e04854e2bb tool_data_table_conf.xml.test --- a/tool_data_table_conf.xml.test Fri Aug 30 08:09:05 2019 -0400 +++ b/tool_data_table_conf.xml.test Thu Nov 28 15:56:07 2019 -0500 |
| b |
| @@ -1,7 +1,7 @@ <tables> <!-- Location of rnastar indexes for testing --> <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> - <columns>value, dbkey, name, path, with-gtf, version</columns> + <columns>value, dbkey, name, path, with_gene_model, version</columns> <file path="${__HERE__}/test-data/rnastar_index2_versioned.loc" /> </table> </tables> |