| Next changeset 1:0bf2b08766d9 (2018-08-14) |
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Commit message:
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac |
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added:
Galaxy-Workflow-SNiPlay.ga repository_dependencies.xml |
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| diff -r 000000000000 -r b9f2901a4b00 Galaxy-Workflow-SNiPlay.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-SNiPlay.ga Mon Apr 16 09:36:25 2018 -0400 |
| [ |
| b'@@ -0,0 +1,888 @@\n+{\n+ "a_galaxy_workflow": "true", \n+ "annotation": "", \n+ "format-version": "0.1", \n+ "name": "SNiPlay Workflow", \n+ "steps": {\n+ "0": {\n+ "annotation": "", \n+ "content_id": null, \n+ "errors": null, \n+ "id": 0, \n+ "input_connections": {}, \n+ "inputs": [], \n+ "label": null, \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 200, \n+ "top": 273\n+ }, \n+ "tool_id": null, \n+ "tool_state": "{}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "uuid": "6cadf2e0-c934-40e9-b7da-6617917bad24", \n+ "workflow_outputs": []\n+ }, \n+ "1": {\n+ "annotation": "", \n+ "content_id": null, \n+ "errors": null, \n+ "id": 1, \n+ "input_connections": {}, \n+ "inputs": [], \n+ "label": null, \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 201, \n+ "top": 360\n+ }, \n+ "tool_id": null, \n+ "tool_state": "{}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "uuid": 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\\\\\\"false\\\\\\", \\\\\\"__current_case__\\\\\\": 0}\\", \\"treeRefinement\\": \\"\\\\\\"--spr\\\\\\"\\", \\"gammaChoice\\": \\"{\\\\\\"__current_case__\\\\\\": 1, \\\\\\"gamma\\\\\\": \\\\\\"false\\\\\\"}\\", \\"fileout_label\\": \\"\\\\\\"Newick tree\\\\\\"\\", \\"input\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"typeChoice\\": \\"{\\\\\\"datatype\\\\\\": \\\\\\"d\\\\\\", \\\\\\"modeldna\\\\\\": \\\\\\"4\\\\\\", \\\\\\"__current_case__\\\\\\": 0}\\", \\"removeGap\\": \\"\\\\\\"\\\\\\"\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "uuid": "74189f4d-bd98-46fc-9778-b8e9a698a539", \n+ "workflow_outputs": []\n+ }, \n+ "17": {\n+ "annotation": "", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_rooting/2.0.0", \n+ "errors": null, \n+ "id": 17, \n+ "input_connections": {\n+ "filein": {\n+ "id": 16, \n+ "output_name": "outputTree"\n+ }\n+ }, \n+ "inputs": [], \n+ "label": null, \n+ "name": "Rooting", \n+ "outputs": [\n+ {\n+ "name": "fileout_log", \n+ "type": "txt"\n+ }, \n+ {\n+ "name": "fileout", \n+ "type": "nwk,nhx"\n+ }\n+ ], \n+ "position": {\n+ "left": 1296, \n+ "top": 798\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_rooting/2.0.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": null, \n+ "name": "sniplay", \n+ "owner": "dereeper", \n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"fileout_label\\": \\"\\\\\\"out tree\\\\\\"\\", \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null, \\"filein\\": \\"{\\\\\\"values\\\\\\": [{\\\\\\"src\\\\\\": \\\\\\"hda\\\\\\", \\\\\\"id\\\\\\": 36319}]}\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "uuid": "ded86308-97bc-4580-adf1-23b1cc86c302", \n+ "workflow_outputs": []\n+ }\n+ }, \n+ "tags": [], \n+ "uuid": "f3ca58e0-87e5-4314-906e-9d2d34f95dc8"\n+}\n' |
| b |
| diff -r 000000000000 -r b9f2901a4b00 repository_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Mon Apr 16 09:36:25 2018 -0400 |
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| @@ -0,0 +1,13 @@ +<?xml version="1.0"?> +<repositories description="SNiPlay3 complete workflow: exploration and large scale analyses of genomic variations"> + <repository changeset_revision="c6640c49fd01" name="sniplay" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="e119d00db28c" name="fastme" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="b04635ebfab0" name="snpsift" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="225031d5c818" name="readseq" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="7130bd0d2a83" name="vcftools_filter_stats_diversity" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="633d264f8888" name="snpeff_from_gff_vcf" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0ba60156e25f" name="snmf" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f733bf4f49ca" name="plink" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="652aafd88060" name="tassel5" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="380b364980f9" name="mlmm" owner="dereeper" toolshed="http://toolshed.g2.bx.psu.edu" /> +</repositories> |