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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4 |
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modified:
Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-1.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-2.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-3.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-4.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-1.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-1.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-2.ga Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_1-1,2,3.ga Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga repository_dependencies.xml |
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added:
Galaxy-Workflow-Metavisitor__Spades_test_in_Use_Case_2-2.ga Galaxy-Workflow-Metavisitor__Trinity_test_in_Use_Case_2-2.ga Galaxy-Workflow-Metavisitor__Workflow_for_small_RNA_profiling_of_contigs.ga |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Spades_test_in_Use_Case_2-2.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Metavisitor__Spades_test_in_Use_Case_2-2.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
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| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Trinity_test_in_Use_Case_2-2.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Metavisitor__Trinity_test_in_Use_Case_2-2.ga Thu Nov 17 07:27:04 2016 -0500 |
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| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-1.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-1.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-1.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| b'@@ -107,7 +107,7 @@\n "tool_errors": null, \n "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/0.9.4", \n "tool_shed_repository": {\n- "changeset_revision": "befdb392fece", \n+ "changeset_revision": "a9d8f69d59fb", \n "name": "fetch_fasta_from_ncbi", \n "owner": "drosofff", \n "tool_shed": "toolshed.g2.bx.psu.edu"\n@@ -156,7 +156,7 @@\n "tool_errors": null, \n "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/yac_clipper/yac/1.3.6", \n "tool_shed_repository": {\n- "changeset_revision": "91cce7c1436d", \n+ "changeset_revision": "a18edcf9c7ed", \n "name": "yac_clipper", \n "owner": "drosofff", \n "tool_shed": "toolshed.g2.bx.psu.edu"\n@@ -175,7 +175,7 @@\n }, \n "4": {\n "annotation": "", \n- "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.06", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", \n "id": 4, \n "input_connections": {\n "input_file": 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| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-2.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-2.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-2.ga Thu Nov 17 07:27:04 2016 -0500 |
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| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-3.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-3.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-3.ga Thu Nov 17 07:27:04 2016 -0500 |
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| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-4.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-4.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-4.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -95,7 +95,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/yac_clipper/yac/1.3.6", "tool_shed_repository": { - "changeset_revision": "91cce7c1436d", + "changeset_revision": "a18edcf9c7ed", "name": "yac_clipper", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -196,7 +196,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", "tool_shed_repository": { - "changeset_revision": "330dd8a8c31a", + "changeset_revision": "36388b666bfc", "name": "msp_fasta_tabular_converter", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -242,7 +242,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", "tool_shed_repository": { - "changeset_revision": "330dd8a8c31a", + "changeset_revision": "36388b666bfc", "name": "msp_fasta_tabular_converter", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -261,7 +261,7 @@ }, "6": { "annotation": "", - 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"tool_version": "0.1.06", + "tool_version": "0.1.08", "type": "tool", "uuid": "bf30a0ad-4ef9-49f0-b4c7-4aae52017748", "workflow_outputs": [ @@ -488,7 +488,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", "tool_shed_repository": { - "changeset_revision": "6dfa79a6908a", + "changeset_revision": "1991c830504a", "name": "msp_blastparser_and_hits", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-1.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-1.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-1.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| b'@@ -169,7 +169,7 @@\n }, \n "4": {\n "annotation": "", \n- "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.06", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", \n "id": 4, \n "input_connections": {\n "input_file": {\n@@ -198,15 +198,15 @@\n }\n }, \n "tool_errors": null, \n- "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.06", \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", \n "tool_shed_repository": {\n- "changeset_revision": "577d9c12411a", \n+ "changeset_revision": "3034ce97dd33", \n "name": "ncbi_blast_plus", \n "owner": "devteam", \n "tool_shed": "toolshed.g2.bx.psu.edu"\n }, \n "tool_state": "{\\"__page__\\": 0, \\"mask_data_file\\": \\"null\\", \\"title\\": \\"\\\\\\"DCV NC_001834.1\\\\\\"\\", \\"dbtype\\": \\"\\\\\\"nucl\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"hash_index\\": 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| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -356,7 +356,7 @@ }, "7": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", + "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", "id": 7, "input_connections": { "inputs_0|input": { @@ -379,15 +379,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", + "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", "tool_shed_repository": { - "changeset_revision": "f08d9c814ffb", + "changeset_revision": "dc684e37f668", "name": "msp_oases", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"end_hash_length\": \"\\\"69\\\"\", \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"start_hash_length\": \"\\\"25\\\"\"}", - "tool_version": "1.1.4", + "tool_version": "1.1.5", "type": "tool", "uuid": "98ece8ec-729a-41a1-a61e-f6fcfce0e835", "workflow_outputs": [ @@ -444,7 +444,7 @@ }, "9": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.06", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", "id": 9, "input_connections": { "db_opts|histdb": { @@ -471,15 +471,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.06", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", "tool_shed_repository": { - "changeset_revision": "577d9c12411a", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"query_gencode\": \"\\\"1\\\"\", \"blast_type\": \"\\\"blastx\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", - "tool_version": "0.1.06", + "tool_version": "0.1.08", "type": "tool", "uuid": "b151f8e8-c81b-466a-8a31-d4b42d4b95e9", "workflow_outputs": [ @@ -549,7 +549,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", "tool_shed_repository": { - "changeset_revision": "6dfa79a6908a", + "changeset_revision": "1991c830504a", "name": "msp_blastparser_and_hits", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-1.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-1.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-1.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -261,7 +261,7 @@ }, "6": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", + "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", "id": 6, "input_connections": { "input": { @@ -313,22 +313,22 @@ } }, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", "tool_shed_repository": { - "changeset_revision": "c1bfa227bbb6", + "changeset_revision": "615d2550977f", "name": "msp_sr_bowtie", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"unal\\\"\", \"v_mismatches\": \"\\\"2\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"indexed\\\", \\\"index\\\": \\\"hg19\\\", \\\"__current_case__\\\": 0}\", \"method\": \"\\\"k_option\\\"\"}", - 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"tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "0e8b01bc-d919-4bc4-ba28-c2fde37de6b6", "workflow_outputs": [ |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-2.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-2.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-2.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -413,7 +413,7 @@ }, "7": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", + "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", "id": 7, "input_connections": { "inputs_0|input": { @@ -436,15 +436,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", + "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", "tool_shed_repository": { - "changeset_revision": "f08d9c814ffb", + "changeset_revision": "dc684e37f668", "name": "msp_oases", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"end_hash_length\": \"\\\"69\\\"\", \"__rerun_remap_job_id__\": null, \"start_hash_length\": \"\\\"13\\\"\"}", - "tool_version": "1.1.4", + "tool_version": "1.1.5", "type": "tool", "uuid": "b525a58a-dd2d-48c4-ac0e-516184a53ced", "workflow_outputs": [ @@ -457,7 +457,7 @@ }, "8": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "id": 8, "input_connections": { "db_opts|histdb": { @@ -484,15 +484,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "tool_shed_repository": { - "changeset_revision": "7f3c448e119b", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", - "tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "da354a9b-03b3-4aa9-b409-0689f6a3e15b", "workflow_outputs": [ |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -228,7 +228,7 @@ }, "4": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", "id": 4, "input_connections": { "input_file": { @@ -251,15 +251,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", "tool_shed_repository": { - "changeset_revision": "7f3c448e119b", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"title\": \"\\\"reference virus blast nucleotide database\\\"\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"input_file\": \"null\", \"parse_seqids\": \"\\\"false\\\"\"}", - 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"tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "6aad301d-b295-43af-ae9b-a1ec6f41da49", "workflow_outputs": [] |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_1-1,2,3.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_1-1,2,3.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_1-1,2,3.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
| @@ -223,7 +223,7 @@ }, "5": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", + "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", "id": 5, "input_connections": { "input": { @@ -276,13 +276,13 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", "tool_shed_repository": { - "changeset_revision": "c1bfa227bbb6", + "changeset_revision": "615d2550977f", "name": "msp_sr_bowtie", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"No\\\"\", \"v_mismatches\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"method\": \"\\\"multiple\\\"\"}", - "tool_version": "1.1.2", + "tool_version": "1.1.2.1", "type": "tool", "uuid": "a9880e4e-f47f-4a21-ad20-5aefb83b57ad", "workflow_outputs": [] @@ -393,7 +393,7 @@ }, "8": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", + "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0", "id": 8, "input_connections": { "refGenomeSource|ownFile": { @@ -447,15 +447,15 @@ } }, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", + "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0", "tool_shed_repository": { - "changeset_revision": "68f58363f1c6", + "changeset_revision": "92898cc3ea19", "name": "msp_sr_readmap_and_size_histograms", "owner": "drosofff", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"minquery\": \"\\\"18\\\"\", \"__page__\": 0, \"rows_per_page\": \"\\\"8\\\"\", \"yrange\": \"\\\"0\\\"\", \"title\": \"\\\"Readmaps and size distributions\\\"\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"series\\\": [{\\\"__index__\\\": 0, \\\"norm\\\": \\\"1.0\\\", \\\"input\\\": null}], \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"maxquery\": \"\\\"30\\\"\", \"xlabel\": \"\\\"Coordinates/read size\\\"\", \"ylabel\": \"\\\"Number of reads\\\"\", \"gff\": \"null\"}", - "tool_version": "1.1.5", + "tool_version": "1.2.0", "type": "tool", "uuid": "ebaf90ab-b8ea-428f-876c-8f9fabd1fbf9", "workflow_outputs": [ |
| b |
| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga --- a/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga Thu Nov 17 07:27:04 2016 -0500 |
| [ |
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| diff -r 48b020a0d2f7 -r ba15c770fd40 Galaxy-Workflow-Metavisitor__Workflow_for_small_RNA_profiling_of_contigs.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_small_RNA_profiling_of_contigs.ga Thu Nov 17 07:27:04 2016 -0500 |
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| diff -r 48b020a0d2f7 -r ba15c770fd40 repository_dependencies.xml --- a/repository_dependencies.xml Fri May 13 05:46:40 2016 -0400 +++ b/repository_dependencies.xml Thu Nov 17 07:27:04 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories description="These workflows require the repository suite_metavisitor_1_2"> - <repository changeset_revision="0f33d75ae19b" name="suite_metavisitor_1_2" owner="drosofff" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9f66ff54d573" name="suite_metavisitor_1_2" owner="drosofff" toolshed="http://toolshed.g2.bx.psu.edu" /> </repositories> |