| Previous changeset 0:cbd6667ca478 (2016-07-20) Next changeset 2:324f32e70ea4 (2017-10-25) |
|
Commit message:
Update workflows and add dependency info |
|
modified:
RNA-seq_paired_end_with_TopHat_-_hg19.ga RNA-seq_paired_end_with_TopHat_-_mm10.ga RNA-seq_single_end_with_TopHat_-_hg19.ga RNA-seq_single_end_with_TopHat_-_mm10.ga |
|
added:
repository_dependencies.xml |
| b |
| diff -r cbd6667ca478 -r ba1b76257fa5 RNA-seq_paired_end_with_TopHat_-_hg19.ga --- a/RNA-seq_paired_end_with_TopHat_-_hg19.ga Wed Jul 20 16:58:05 2016 -0400 +++ b/RNA-seq_paired_end_with_TopHat_-_hg19.ga Thu Jul 21 11:55:13 2016 -0400 |
| [ |
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| b |
| diff -r cbd6667ca478 -r ba1b76257fa5 RNA-seq_paired_end_with_TopHat_-_mm10.ga --- a/RNA-seq_paired_end_with_TopHat_-_mm10.ga Wed Jul 20 16:58:05 2016 -0400 +++ b/RNA-seq_paired_end_with_TopHat_-_mm10.ga Thu Jul 21 11:55:13 2016 -0400 |
| [ |
| b'@@ -82,7 +82,13 @@\n "post_job_actions": {}, \n "tool_errors": null, \n "tool_id": "toolshed.g2.bx.psu.edu/repos/kevyin/fastq_groomer_parallel/fastq_groomer_parallel/0.3.1", \n- "tool_state": "{\\"__page__\\": 0, \\"input_type\\": \\"\\\\\\"sanger\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"options_type\\": \\"{\\\\\\"options_type_selector\\\\\\": \\\\\\"basic\\\\\\", \\\\\\"__current_case__\\\\\\": 0}\\", \\"input_file\\": \\"null\\"}", \n+ "tool_shed_repository": {\n+ "changeset_revision": "66ca0d174cf2", \n+ "name": "fastq_groomer_parallel", \n+ "owner": "kevyin", \n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"__page__\\": 0, \\"input_type\\": \\"\\\\\\"sanger\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"options_type\\": \\"{\\\\\\"__current_case__\\\\\\": 0, \\\\\\"options_type_selector\\\\\\": \\\\\\"basic\\\\\\"}\\", \\"input_file\\": \\"null\\"}", \n "tool_version": "0.3.1", \n "type": "tool", \n "uuid": 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"tool_state": "{\\"__page__\\": 0, \\"reference_gene_sets_source\\": \\"{\\\\\\"reference_gene_sets\\\\\\": \\\\\\"/mnt/galaxyIndices/gene_annotations/mm10_genes.gtf\\\\\\", \\\\\\"__current_case__\\\\\\": 2, \\\\\\"source_select\\\\\\": \\\\\\"indexed_all\\\\\\"}\\", \\"format\\": \\"\\\\\\"tabdel_short\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"alignments\\": \\"null\\", \\"extended_parameters\\": \\"{\\\\\\"__current_case__\\\\\\": 0, \\\\\\"parameters\\\\\\": \\\\\\"default\\\\\\"}\\"}", \n "tool_version": "1.4.6.p5", \n "type": "tool", \n "uuid": "39697dc6-5c56-4f5c-be9c-354197ee77dd", \n' |
| b |
| diff -r cbd6667ca478 -r ba1b76257fa5 RNA-seq_single_end_with_TopHat_-_hg19.ga --- a/RNA-seq_single_end_with_TopHat_-_hg19.ga Wed Jul 20 16:58:05 2016 -0400 +++ b/RNA-seq_single_end_with_TopHat_-_hg19.ga Thu Jul 21 11:55:13 2016 -0400 |
| [ |
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| b |
| diff -r cbd6667ca478 -r ba1b76257fa5 RNA-seq_single_end_with_TopHat_-_mm10.ga --- a/RNA-seq_single_end_with_TopHat_-_mm10.ga Wed Jul 20 16:58:05 2016 -0400 +++ b/RNA-seq_single_end_with_TopHat_-_mm10.ga Thu Jul 21 11:55:13 2016 -0400 |
| [ |
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| b |
| diff -r cbd6667ca478 -r ba1b76257fa5 repository_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Thu Jul 21 11:55:13 2016 -0400 |
| b |
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