| Previous changeset 27:eefed7a82001 (2023-08-02) Next changeset 29:53dc6aef5441 (2023-08-03) |
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Commit message:
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty |
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modified:
extract_files_from_re_archive.xml |
| b |
| diff -r eefed7a82001 -r ba970b24e48c extract_files_from_re_archive.xml --- a/extract_files_from_re_archive.xml Wed Aug 02 12:59:29 2023 +0000 +++ b/extract_files_from_re_archive.xml Wed Aug 02 13:09:47 2023 +0000 |
| b |
| @@ -8,24 +8,33 @@ #for $sf in $file: #if $sf == "CLUSTER_TABLE.csv" mkdir -p tempdir + && unzip ${RepeatExplorer_archive} ${sf} -d tempdir + && find tempdir -type f -name "${sf}" -exec cat {} + > ${cluster_table} + && rm -r tempdir ; #end if #if $sf == "COMPARATIVE_ANALYSIS_COUNTS.csv" mkdir -p tempdir + && unzip ${RepeatExplorer_archive} ${sf} -d tempdir + && find tempdir -type f -name "${sf}" -exec cat {} + > ${comparative_analysis_count} + && rm -r tempdir ; #end if #if $sf == "SUPERCLUSTER_TABLE.csv" mkdir -p tempdir + && unzip ${RepeatExplorer_archive} ${sf} -d tempdir + && find tempdir -type f -name "${sf}" -exec cat {} + > ${supercluster_table} + && rm -r tempdir #end if |