| Next changeset 1:89a36b0f718c (2015-07-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_kraken_0_10_5/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09 |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r bafddeadd6aa tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 19 14:59:03 2015 -0400 |
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| @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="kraken" version="0.10.5"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/kraken/kraken-0.10.5-beta-Linux_x86_64.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions> + <action type="download_by_url">https://ccb.jhu.edu/software/kraken/dl/kraken-0.10.5-beta.tgz</action> + <action type="shell_command">install_kraken.sh $INSTALL_DIR/bin</action> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme> +<![CDATA[ +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained +through metagenomic studies. Previous attempts by other bioinformatics software to accomplish +this task have often used sequence alignment or machine learning techniques that were quite +slow, leading to the development of less sensitive but much faster abundance estimation programs. +Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers +and a novel classification algorithm. +]]> + </readme> + </package> +</tool_dependency> |