| Previous changeset 4:019864881779 (2021-02-01) Next changeset 6:cda49fede0c2 (2021-03-28) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40" |
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modified:
humann2.xml humann2_macros.xml |
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| diff -r 019864881779 -r bb13650e8115 humann2.xml --- a/humann2.xml Mon Feb 01 18:17:35 2021 +0000 +++ b/humann2.xml Fri Feb 05 18:28:51 2021 +0000 |
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| @@ -1,12 +1,10 @@ -<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.1"> +<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.2"> <description>to profile presence/absence and abundance of microbial pathways and gene families</description> <macros> <import>humann2_macros.xml</import> </macros> - <stdio> - <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> - </stdio> - <expand macro="requirements"> + <expand macro="stdio"/> + <expand macro="requirements"> <requirement type="package" version="2.3.0">bowtie2</requirement> <requirement type="package" version="2.6.0">metaphlan2</requirement> <requirement type="package" version="0.8.24">diamond</requirement> |
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| diff -r 019864881779 -r bb13650e8115 humann2_macros.xml --- a/humann2_macros.xml Mon Feb 01 18:17:35 2021 +0000 +++ b/humann2_macros.xml Fri Feb 05 18:28:51 2021 +0000 |
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| @@ -7,6 +7,13 @@ <yield/> </requirements> </xml> + + <xml name="stdio"> + <stdio> + <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + </stdio> + </xml> <xml name="version"> <version_command>humann2 --version</version_command> </xml> |