Repository 'openbabel_filter'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_filter

Changeset 2:bb3dc83ac131 (2017-05-20)
Previous changeset 1:6fba0f5e89d5 (2017-05-20) Next changeset 3:70b19c4e4eff (2017-05-20)
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 78ac0521d7df684e96c1b9c1ba2a17b02e681608
modified:
__pycache__/cheminfolib.cpython-36.pyc
ob_filter.py
b
diff -r 6fba0f5e89d5 -r bb3dc83ac131 __pycache__/cheminfolib.cpython-36.pyc
b
Binary file __pycache__/cheminfolib.cpython-36.pyc has changed
b
diff -r 6fba0f5e89d5 -r bb3dc83ac131 ob_filter.py
--- a/ob_filter.py Sat May 20 08:59:00 2017 -0400
+++ b/ob_filter.py Sat May 20 20:03:09 2017 -0400
[
@@ -95,7 +95,7 @@
     filters = json.loads((args.filters).replace(' ', '').replace(',}', '}'))
     if args.iformat == 'sdf':
         # Check if the sdf file contains all of the required metadata to invoke the precalculation filtering
-        mol = pybel.readfile('sdf', args.input).next()
+        mol = next(pybel.readfile('sdf', args.input))
         for key, elem in filters.items():
             property = cheminfolib.ColumnNames[key]
             if not property in mol.data: