| Previous changeset 2:7a12314c5b64 (2015-11-19) Next changeset 4:531ff1d417b6 (2018-09-07) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 4f3b019991c8a322870d1130a7c0a34d5c09758f |
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modified:
art_454.xml art_illumina.xml art_solid.xml macros.xml |
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| diff -r 7a12314c5b64 -r bb7e0ccc0029 art_454.xml --- a/art_454.xml Thu Nov 19 12:32:17 2015 -0500 +++ b/art_454.xml Tue Jun 28 11:32:19 2016 -0400 |
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| @@ -110,7 +110,7 @@ <param name="input_seq_file" value="input.fa" /> <param name="fold_coverage" value="20" /> <param name="choice" value="single_end" /> - <output name="output_fq1_single" file="art.454.01.fq" /> + <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" /> </test> <test> <param name="rndSeed" value="42" /> @@ -118,8 +118,8 @@ <param name="fold_coverage" value="20" /> <param name="choice" value="single_end" /> <param name="sam" value="True" /> - <output name="output_fq1_single" file="art.454.01.fq" /> - <output name="output_sam" file="art.454.01.sam" lines_diff="2"/> + <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" /> + <output name="output_sam" file="art.454.01.sam" compare="sim_size" delta="5000"/> </test> <!-- Paired End tests --> <test> @@ -130,9 +130,9 @@ <param name="fragment_size" value="105" /> <param name="fragment_sd" value="5" /> <param name="sam" value="True" /> - <output name="output_fq1_paired" file="art.454.021.fq" /> - <output name="output_fq2_paired" file="art.454.022.fq" /> - <output name="output_sam" file="art.454.02.sam" lines_diff="2"/> + <output name="output_fq1_paired" file="art.454.021.fq" compare="sim_size" delta="5000" /> + <output name="output_fq2_paired" file="art.454.022.fq" compare="sim_size" delta="5000" /> + <output name="output_sam" file="art.454.02.sam" compare="sim_size" delta="5000"/> </test> </tests> <help><![CDATA[ |
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| diff -r 7a12314c5b64 -r bb7e0ccc0029 art_illumina.xml --- a/art_illumina.xml Thu Nov 19 12:32:17 2015 -0500 +++ b/art_illumina.xml Tue Jun 28 11:32:19 2016 -0400 |
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| @@ -116,9 +116,9 @@ <param name="aln" value="True" /> <param name="sam" value="True" /> - <output name="output_fq1_single" file="art.illumina.01.fq" /> - <output name="output_aln1_single" file="art.illumina.01.aln" lines_diff="2"/> - <output name="output_sam" file="art.illumina.01.sam" lines_diff="2"/> + <output name="output_fq1_single" file="art.illumina.01.fq" compare="sim_size" delta="5000" /> + <output name="output_aln1_single" file="art.illumina.01.aln" compare="sim_size" delta="5000"/> + <output name="output_sam" file="art.illumina.01.sam" compare="sim_size" delta="5000"/> </test> <test> <param name="rndSeed" value="42" /> @@ -131,11 +131,11 @@ <param name="aln" value="True" /> <param name="sam" value="True" /> - <output name="output_fq1_paired" file="art.illumina.021.fq" /> - <output name="output_fq2_paired" file="art.illumina.022.fq" /> - <output name="output_aln1_paired" file="art.illumina.021.aln" lines_diff="2"/> - <output name="output_aln2_paired" file="art.illumina.022.aln" lines_diff="2"/> - <output name="output_sam" file="art.illumina.02.sam" lines_diff="2"/> + <output name="output_fq1_paired" file="art.illumina.021.fq" compare="sim_size" delta="5000" /> + <output name="output_fq2_paired" file="art.illumina.022.fq" compare="sim_size" delta="5000" /> + <output name="output_aln1_paired" file="art.illumina.021.aln" compare="sim_size" delta="5000"/> + <output name="output_aln2_paired" file="art.illumina.022.aln" compare="sim_size" delta="5000"/> + <output name="output_sam" file="art.illumina.02.sam" compare="sim_size" delta="5000"/> </test> </tests> <help><![CDATA[ |
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| diff -r 7a12314c5b64 -r bb7e0ccc0029 art_solid.xml --- a/art_solid.xml Thu Nov 19 12:32:17 2015 -0500 +++ b/art_solid.xml Tue Jun 28 11:32:19 2016 -0400 |
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| @@ -123,7 +123,7 @@ <param name="choice" value="single_end" /> <param name="sam" value="False" /> - <output name="output_fq1_single" file="art.solid.01.fq" /> + <output name="output_fq1_single" file="art.solid.01.fq" compare="sim_size" delta="5000" /> </test> <test> <param name="rndSeed" value="42" /> @@ -136,9 +136,9 @@ <param name="fragment_sd" value="10" /> <param name="sam" value="True" /> - <output name="output_fq1_paired" file="art.solid.02_F3.fq" /> - <output name="output_fq2_paired" file="art.solid.02_F5.fq" /> - <output name="output_sam" file="art.solid.02.sam" lines_diff="2"/> + <output name="output_fq1_paired" file="art.solid.02_F3.fq" compare="sim_size" delta="5000" /> + <output name="output_fq2_paired" file="art.solid.02_F5.fq" compare="sim_size" delta="5000" /> + <output name="output_sam" file="art.solid.02.sam" compare="sim_size" delta="5000"/> </test> </tests> <help><![CDATA[ |
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| diff -r 7a12314c5b64 -r bb7e0ccc0029 macros.xml --- a/macros.xml Thu Nov 19 12:32:17 2015 -0500 +++ b/macros.xml Tue Jun 28 11:32:19 2016 -0400 |
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| @@ -1,9 +1,9 @@ <macros> - <token name="@WRAPPER_VERSION@">2014.11.03.0</token> + <token name="@WRAPPER_VERSION@">3.19.15</token> <xml name="requirements"> <requirements> - <requirement type="package" version="2014_11_03">art</requirement> + <requirement type="package" version="3.19.15">art</requirement> <yield/> </requirements> </xml> |