| Previous changeset 0:bf836aaeca19 (2024-02-22) Next changeset 2:b566b27247f7 (2024-03-08) |
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Commit message:
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/qcxms commit b33d814384657d9ff2357f86529e9cad49a6c2f9 |
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modified:
qcxms_prod_run.xml |
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| diff -r bf836aaeca19 -r bc099c440016 qcxms_prod_run.xml --- a/qcxms_prod_run.xml Thu Feb 22 08:41:32 2024 +0000 +++ b/qcxms_prod_run.xml Tue Feb 27 16:20:31 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="qcxms_production_run" name="QCxMS production run" version="@TOOL_VERSION@+galaxy0" profile="21.05"> +<tool id="qcxms_production_run" name="QCxMS production run" version="@TOOL_VERSION@+galaxy1" profile="21.05"> <description>Production run to obtain a QCxMS simulated mass spectrum</description> <macros> @@ -10,7 +10,7 @@ <command detect_errors="exit_code"><![CDATA[ python3 '${create_folder_structure}' && - find TMPQCXMS/*/ -type d | xargs -I {} -P ${GALAXY_SLOTS} sh -c 'cd {} && /qcxms_bin/qcxms --prod >> $log' && + find TMPQCXMS/*/ -type d | xargs -I {} -P \${GALAXY_SLOTS:-1} sh -c 'cd {} && /qcxms_bin/qcxms --prod >> $log' && /qcxms_bin/getres && /plotms_bin/PlotMS.v.6.2.0/plotms && sh ${__tool_directory__}/msp_out.sh @@ -84,4 +84,4 @@ <citation type="doi">10.1255/ejms.1313</citation> <citation type="doi">10.1021/acs.jpca.6b02907</citation> </citations> -</tool> \ No newline at end of file +</tool> |