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Commit message:
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit bb28dd21d9b6016b1e25bc1c63e266dd8372af21" |
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added:
repository_dependencies.xml |
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| diff -r 000000000000 -r bc72925159fc repository_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Wed Jun 09 22:16:42 2021 +0000 |
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| @@ -0,0 +1,22 @@ +<?xml version="1.0" ?> +<repositories description="A suite of tools associated with SNVphyl pipeline"> + <repository name="regex_find_replace" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae8c4b2488e7"/> + <repository name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef2c525bd8cd"/> + <repository name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0dbff46d5a1b"/> + <repository name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="98d5499ead46"/> + <repository name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="072f606e2e69"/> + <repository name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2bf47d57ebb5"/> + <repository name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ba47ab90254"/> + <repository name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48922d9ca355"/> + <repository name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d3e3d7aa0c4"/> + <repository name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7e6be57de1a0"/> + <repository name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2096d0c149e"/> + <repository name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4c249c0aebad"/> + <repository name="bundle_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="705ebd286b57"/> + <repository name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="80b7566e62ec"/> + <repository name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2fbea749a1d1"/> + <repository name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9a43abcd993"/> + <repository name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="90981f86000f"/> + <repository name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cf81ca17e9d"/> + <repository name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dc704146cc6"/> +</repositories> \ No newline at end of file |