Previous changeset 6:7dacba909bb6 (2016-04-04) Next changeset 8:c2be3b890724 (2017-06-06) |
Commit message:
planemo upload commit 0278da78e2822e80025c39b1bc1cd71bc4b0860f |
modified:
abims_anova.xml tool_dependencies.xml |
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diff -r 7dacba909bb6 -r bcd05315efc5 abims_anova.xml --- a/abims_anova.xml Mon Apr 04 08:38:43 2016 -0400 +++ b/abims_anova.xml Mon Apr 04 08:46:20 2016 -0400 |
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@@ -11,7 +11,7 @@ <exit_code range="1:" level="fatal" /> </stdio> - <command interpreter="Rscript"><![CDATA[ + <command interpreter="Rscript"> abims_anova.r file "$input" sampleinfo "$sampleinfo" mode "$mode" condition "c('$condition_1' #for $i, $s in enumerate( $conditions ) @@ -19,7 +19,7 @@ #end for )" interaction $interaction method $method threshold $threshold selection_method $selection_method sep "$sep" dec "$dec" outputdatapvalue $dataMatrixPValue outputdatafiltered $dataMatrixFiltered - ]]></command> + </command> <inputs> <param name="input" type="data" label="Data Matrix file" format="tabular" help="Matrix of numeric data with headers." /> @@ -92,7 +92,7 @@ </test> </tests> - <help><![CDATA[ + <help> .. class:: infomark @@ -248,7 +248,7 @@ .. image:: anova_workflow.png - ]]></help> + </help> <citations> <citation>Ronald A. Fisher in the 1930s</citation> |
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diff -r 7dacba909bb6 -r bcd05315efc5 tool_dependencies.xml --- a/tool_dependencies.xml Mon Apr 04 08:38:43 2016 -0400 +++ b/tool_dependencies.xml Mon Apr 04 08:46:20 2016 -0400 |
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@@ -3,7 +3,7 @@ <package name="R" version="3.1.2"> <repository changeset_revision="c987143177d4" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="batch" version="1.1_4"> - <repository changeset_revision="82494b082f2f" name="package_r_batch_1_1_4" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="r-batch" version="1.1_4"> + <repository changeset_revision="e8a964ca8656" name="package_r_batch_1_1_4" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |