Repository 'ensembl_get_sequences'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_sequences

Changeset 3:bce784076824 (2017-03-24)
Previous changeset 2:4b7261f484bb (2016-12-21) Next changeset 4:3b686142e9c2 (2018-04-13)
Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
modified:
get_sequences.xml
b
diff -r 4b7261f484bb -r bce784076824 get_sequences.xml
--- a/get_sequences.xml Wed Dec 21 15:16:49 2016 -0500
+++ b/get_sequences.xml Fri Mar 24 11:57:48 2017 -0400
[
@@ -4,15 +4,15 @@
         <requirement type="package" version="2.12.4">requests</requirement>
         <requirement type="package" version="1.10.0">six</requirement>
     </requirements>
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
-python $__tool_directory__/get_sequences.py
+python '$__tool_directory__/get_sequences.py'
 -s $species_selector
 --expand_3prime $expand_3prime
 --expand_5prime $expand_5prime
 -t $type_selector
--i "$input"
-> "$output"
+-i '$input'
+> '$output'
 ]]>
     </command>