| Previous changeset 0:25da76152cf2 (2015-12-15) Next changeset 2:2fe97192eb4b (2015-12-18) |
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Commit message:
planemo upload commit 5e6b76536ce524b849abf98220dcb1ec77570813-dirty |
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modified:
mrbayes.xml tool_dependencies.xml |
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| diff -r 25da76152cf2 -r bd36a094f934 mrbayes.xml --- a/mrbayes.xml Tue Dec 15 14:26:53 2015 -0500 +++ b/mrbayes.xml Tue Dec 15 16:22:56 2015 -0500 |
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| @@ -1,9 +1,12 @@ <?xml version="1.0"?> -<tool id="mrbayes" name="MrBayes" version="1.0.0"> +<tool id="mrbayes" name="MrBayes" version="1.0.1"> <description>with options and commands</description> <requirements> <requirement type="package" version="3.2.6">mrbayes</requirement> </requirements> + <stdio> + <exit_code range="1:" level="fatal" description="Unknown error has occurred"/> + </stdio> <command> mb $command_file > $outfile ## print list of avaialble variables #silent sys.stderr.write("\n \n \n ======== Cheetah template variables ========\n") @@ -15,7 +18,8 @@ <configfiles> <configfile name="command_file"> begin mrbayes; - set seed=$seed; + set Seed=$seed; + set Swapseed=$swapseed; set quitonerror=no; execute $data; outgroup $outgroup; @@ -106,6 +110,10 @@ help="Specify a seed with which to run the job."> <validator type="in_range" min="1" max="inf" message="Must be greater than or equal to 1"/> </param> + <param name="swapseed" type="integer" label="<hr>Swap Seed" optional="false" value="5" + help="Specify a swap seed with which to run the job."> + <validator type="in_range" min="1" max="inf" message="Must be greater than or equal to 1"/> + </param> </inputs> <outputs> <data name="outfile" format="txt"/> |
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| diff -r 25da76152cf2 -r bd36a094f934 tool_dependencies.xml --- a/tool_dependencies.xml Tue Dec 15 14:26:53 2015 -0500 +++ b/tool_dependencies.xml Tue Dec 15 16:22:56 2015 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="mrbayes" version="3.2.6"> - <repository changeset_revision="7954c50fe0a8" name="package_mrbayes_3_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="424f2b598610" name="package_mrbayes_3_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |