| Previous changeset 43:0be8011b3d98 (2017-12-01) Next changeset 45:ffc66227835f (2017-12-01) |
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Commit message:
Uploaded |
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modified:
bin/align.pm |
| b |
| diff -r 0be8011b3d98 -r bd4b30bff219 bin/align.pm --- a/bin/align.pm Fri Dec 01 08:01:45 2017 -0500 +++ b/bin/align.pm Fri Dec 01 08:02:00 2017 -0500 |
| b |
| @@ -40,11 +40,11 @@ sub get_unique { - my ( $sam, $s_uni, $prefix, $details, $report ) = @_; + my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_; - my $fout = $prefix.'all.fastq'; - my $funi = $prefix.'unique.fastq'; - my $frej = $prefix.'rejected.fastq'; + my $fout = $col_prefix.'all_mappers.fastq'; + my $funi = $col_prefix.'unique_mappers.fastq'; + my $frej = $col_prefix.'unmapped.fastq'; my $repartition = $prefix.'distribution.txt'; my $png_rep = $prefix.'distribution.png'; |