| Previous changeset 6:ed3dea19c464 (2021-03-16) Next changeset 8:3a6a5381db36 (2023-10-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02 |
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modified:
hicCompartmentalization.xml macros.xml |
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| diff -r ed3dea19c464 -r bd6e26c47853 hicCompartmentalization.xml --- a/hicCompartmentalization.xml Tue Mar 16 14:56:24 2021 +0000 +++ b/hicCompartmentalization.xml Tue Jan 10 18:48:44 2023 +0000 |
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| @@ -58,18 +58,18 @@ <tests> <test> <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> - <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> + <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" /> <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> </test> <test> <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> - <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> + <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" /> <param name="quantile" value='30' /> <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> </test> <test> <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> - <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> + <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" /> <param name="outliers" value='1.0' /> <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> </test> |
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| diff -r ed3dea19c464 -r bd6e26c47853 macros.xml --- a/macros.xml Tue Mar 16 14:56:24 2021 +0000 +++ b/macros.xml Tue Jan 10 18:48:44 2023 +0000 |
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| @@ -1,7 +1,7 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> <token name="@TOOL_VERSION@">3.6</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $use_range.range_min:$use_range.range_max @@ -333,7 +333,7 @@ <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" /> </xml> <xml name="xMax"> - <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> + <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> </xml> <xml name="filterThreshold"> <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." /> |