| Previous changeset 2:d7c01f81739b (2021-06-18) Next changeset 4:11fc6218365d (2021-10-05) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit ec5db8349483b2cd46f9da23abe6cefcf65bc714" |
|
modified:
hyphy_summary.xml scripts/hyphy_summary.py test-data/summary/ORF6-segment.json test-data/summary/merged-segment.json test-data/summary/merged-site.json test-data/summary/nsp7-segment.json test-data/summary/nsp8-segment.json test-data/summary/nsp8-site.json |
| b |
| diff -r d7c01f81739b -r bd90215b7d15 hyphy_summary.xml --- a/hyphy_summary.xml Fri Jun 18 15:37:03 2021 +0000 +++ b/hyphy_summary.xml Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="hyphy_summary" version="1.1.0" name="HyPhy-Summary" profile="21.01"> +<tool id="hyphy_summary" version="1.2.0" name="HyPhy-Summary" profile="21.01"> <description>generate summary report of HyPhy analyses</description> <requirements> - <requirement type="package" version="0.19.7">python-bioext</requirement> + <requirement type="package" version="0.20.1">python-bioext</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/scripts/hyphy_summary.py' @@ -97,19 +97,19 @@ <param argument="--bgm" type="data" format="json,hyphy_results.json" optional="true" label="HyPhy-BGM output dataset" /> </when> <when value="merge"> - <param argument="--summary-inputs" type="data" format="hyphy_results.json" multiple="true" label="Segment annotations to merge" /> - <param argument="--annotation-inputs" type="data" format="hyphy_results.json" multiple="true" label="Site annotations to merge" /> + <param argument="--summary-inputs" type="data" format="hyphy_results.json" multiple="true" label="Summaries to merge" /> + <param argument="--annotation-inputs" type="data" format="hyphy_results.json" multiple="true" label="Annotations to merge" /> </when> </conditional> </inputs> <outputs> - <data name="summary" format="hyphy_results.json" label="${tool.name} on ${on_string} - Segment annotations" /> - <data name="annotation" format="hyphy_results.json" label="${tool.name} on ${on_string} - Site annotations" /> + <data name="summary" format="hyphy_results.json" label="${tool.name} on ${on_string} - Summary" /> + <data name="annotation" format="hyphy_results.json" label="${tool.name} on ${on_string} - Annotation" /> </outputs> <tests> <test> <param name="mode" value="summary" /> - <param name="name" value="epi_isl_1009769" /> + <param name="name" value="REFERENCE" /> <param name="gene" value="nsp8" /> <param name="combined" value="summary/nsp8.combined.fas" /> <param name="fade" value="summary/nsp8.FADE.json" /> @@ -128,7 +128,7 @@ </test> <test> <param name="mode" value="summary" /> - <param name="name" value="epi_isl_1009769" /> + <param name="name" value="REFERENCE" /> <param name="gene" value="ORF6" /> <param name="combined" value="summary/ORF6.combined.fas" /> <param name="fade" value="summary/ORF6.FADE.json" /> @@ -140,7 +140,7 @@ </test> <test> <param name="mode" value="summary" /> - <param name="name" value="epi_isl_1009769" /> + <param name="name" value="REFERENCE" /> <param name="gene" value="nsp7" /> <param name="combined" value="summary/nsp7.combined.fas" /> <param name="fade" value="summary/nsp7.FADE.json" /> |
| b |
| diff -r d7c01f81739b -r bd90215b7d15 scripts/hyphy_summary.py --- a/scripts/hyphy_summary.py Fri Jun 18 15:37:03 2021 +0000 +++ b/scripts/hyphy_summary.py Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| b'@@ -107,7 +107,7 @@\n if self.cfel is None:\n return\n node_tags = {}\n- _ = self._newick_parser(self.cfel[\'input\'][\'trees\'][\'0\'], False, node_tags, self.cfel)[\'json\']\n+ _ = newick_parser(self.cfel[\'input\'][\'trees\'][\'0\'], False, node_tags, self.cfel, self.arguments, self.labels)[\'json\']\n if self.summary_json is not None:\n omegas = {}\n T = {}\n@@ -191,7 +191,7 @@\n return defaultdict(int)\n compressed_subs = {}\n node_tags = {}\n- the_tree = self._newick_parser(self.slac[\'input\'][\'trees\'][\'0\'], False, node_tags, self.slac)[\'json\']\n+ the_tree = newick_parser(self.slac[\'input\'][\'trees\'][\'0\'], False, node_tags, self.slac, self.arguments, self.labels)\n root_node = None\n if self.summary_json is not None:\n for branch, info in self.slac[\'branch attributes\'][\'0\'].items():\n@@ -210,9 +210,9 @@\n if gs[0] >= 0:\n self.labels[root_node] = self.slac[\'branch attributes\'][\'0\'][root_node][\'codon\'][0][i]\n try:\n- self._traverse_tree_in_order(the_tree, self.slac[\'branch attributes\'][\'0\'], i, None, root_node)\n+ traverse_tree_in_order(the_tree, self.labels, self.slac[\'branch attributes\'][\'0\'], i, None, root_node)\n except Exception:\n- raise\n+ pass\n compressed_subs[gs[0]] = self.labels\n for k in set([k[0] for k in node_tags.values()]):\n if len(k):\n@@ -433,195 +433,201 @@\n gene_name = \'N/A\'\n return (genomic_site_coord, gene_name, gene_site)\n \n- def _traverse_tree_in_order(self, node, slac_data, i, parent_tag, root):\n- node_tag = None\n- if node is None:\n- return\n- try:\n- nn = root if node[\'name\'] == \'root\' else node[\'name\']\n- except Exception:\n- raise\n- if nn in slac_data:\n- node_tag = slac_data[nn][\'codon\'][0][i]\n- if (parent_tag != node_tag):\n- self.labels[nn] = node_tag\n- self.labels[node[\'name\']] = node_tag\n- if \'children\' in node:\n- for c in node[\'children\']:\n- if c is not None:\n- if \'name\' in c:\n- self._traverse_tree_in_order(c, slac_data, i, node_tag, root)\n-\n- def _match_node_names(self, qry_node, ref_node, mapping):\n- if \'children\' in qry_node and \'children\' in ref_node:\n- mapping[ref_node[\'name\']] = qry_node[\'name\']\n- if len(qry_node[\'children\']) != len(ref_node[\'children\']):\n- raise Exception(\'Internal topology mismatch\')\n- for i, n in enumerate(ref_node[\'children\']):\n- self._match_node_names(qry_node[\'children\'][i], n, mapping)\n- elif \'children\' in qry_node:\n- raise Exception(\'Topology mismatch\')\n- elif \'children\' in ref_node:\n- raise Exception(\'Topology mismatch\')\n- else:\n- if qry_node[\'name\'] != ref_node[\'name\']:\n- raise Exception(\'Leaf name mismatch\')\n-\n def _get_incoming_labels(self):\n json_data = self._load_json(self.arguments.labels)\n self.incoming_labels = json_data\n \n- def _newick_parser(self, nwk_str, bootstrap_values, track_tags, json_map):\n- clade_stack = []\n- automaton_state = 0\n- current_node_name = \'\'\n- current_node_attribute = \'\'\n- current_node_annotation = \'\'\n- quote_delimiter = None\n- name_quotes = {"\'": 1, \'"\': 1}\n \n- def add_new_tree_level():\n- new_level = {\'name\': None}\n- the_parent = clade_stack[len(clade_stack) - 1]\n- if (\'children\' not in the_parent):\n- the_parent[\'children\'] = []\n- clade_stack.append(new_level)\n- the_parent[\'children\'].append(clade_stack[len(clade_st'..b' automaton_state = 4\n else:\n- if (current_char == \'[\'):\n- if len(current_node_annotation):\n- return generate_error(char_index)\n- else:\n- automaton_state = 4\n+ if (automaton_state == 3):\n+ current_node_attribute += current_char\n else:\n- if (automaton_state == 3):\n- current_node_attribute += current_char\n- else:\n- if (space.search(current_char)):\n- continue\n- if (current_char == \';\'):\n- char_index = len(nwk_str)\n- break\n- current_node_name += current_char\n- elif automaton_state == 2:\n- # inside a quoted expression\n- if (current_char == quote_delimiter):\n- if (char_index < len(nwk_str - 1)):\n- if (nwk_str[char_index + 1] == quote_delimiter):\n- char_index += 1\n- current_node_name += quote_delimiter\n+ if (space.search(current_char)):\n continue\n- quote_delimiter = 0\n- automaton_state = 1\n+ if (current_char == ""):\n+ char_index = len(nwk_str)\n+ break\n+ current_node_name += current_char\n+ elif automaton_state == 2:\n+ # inside a quoted expression\n+ if (current_char == quote_delimiter):\n+ if (char_index < len(nwk_str - 1)):\n+ if (nwk_str[char_index + 1] == quote_delimiter):\n+ char_index += 1\n+ current_node_name += quote_delimiter\n continue\n- else:\n- current_node_name += current_char\n- elif automaton_state == 4:\n- # inside a comment / attribute\n- if (current_char == \']\'):\n- automaton_state = 3\n- else:\n- if (current_char == \'[\'):\n- return generate_error(char_index)\n- current_node_annotation += current_char\n- except Exception:\n- return generate_error(char_index)\n \n- if (len(clade_stack) != 1):\n- return generate_error(len(nwk_str) - 1)\n+ quote_delimiter = 0\n+ automaton_state = 1\n+ continue\n+ else:\n+ current_node_name += current_char\n+ elif automaton_state == 4:\n+ # inside a comment / attribute\n+ if (current_char == "]"):\n+ automaton_state = 3\n+ else:\n+ if (current_char == "["):\n+ return generate_error(char_index)\n+ current_node_annotation += current_char\n+ except Exception as e:\n+ return generate_error(char_index)\n+ print(e)\n \n- if (len(current_node_name)):\n- tree_json[\'name\'] = current_node_name\n+ if (len(clade_stack) != 1):\n+ return generate_error(len(nwk_str) - 1)\n \n- return {\n- \'json\': tree_json,\n- \'error\': None\n- }\n+ if (len(current_node_name)):\n+ tree_json[\'name\'] = current_node_name\n+\n+ return {\n+ \'json\': tree_json,\n+ \'error\': None\n+ }\n \n \n if __name__ == \'__main__\':\n' |
| b |
| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/ORF6-segment.json --- a/test-data/summary/ORF6-segment.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/ORF6-segment.json Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| b'@@ -1,7 +1,1135 @@\n {\n "ORF6": {\n- "map": [],\n+ "map": [\n+ 27201,\n+ 27204,\n+ 27207,\n+ 27210,\n+ 27213,\n+ 27216,\n+ 27219,\n+ 27222,\n+ 27225,\n+ 27228,\n+ 27231,\n+ 27234,\n+ 27237,\n+ 27240,\n+ 27243,\n+ 27246,\n+ 27249,\n+ 27252,\n+ 27255,\n+ 27258,\n+ 27261,\n+ 27264,\n+ 27267,\n+ 27270,\n+ 27273,\n+ 27276,\n+ 27279,\n+ 27282,\n+ 27285,\n+ 27288,\n+ 27291,\n+ 27294,\n+ 27297,\n+ 27300,\n+ 27303,\n+ 27306,\n+ 27309,\n+ 27312,\n+ 27315,\n+ 27318,\n+ 27321,\n+ 27324,\n+ 27327,\n+ 27330,\n+ 27333,\n+ 27336,\n+ 27339,\n+ 27342,\n+ 27345,\n+ 27348,\n+ 27351,\n+ 27354,\n+ 27357,\n+ 27360,\n+ 27363,\n+ 27366,\n+ 27369,\n+ 27372,\n+ 27375,\n+ 27378,\n+ 27381\n+ ],\n "tree": "(REFERENCE,(gb_MW505295_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_TX_QDX_3142_2021_Segment_null_Host_Human,gb_MW586274_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_TX_CDC_STM_000005611_2021_Segment_null_Host_Human)Node184,epi_isl_1533799_hCoV_19_India_MH_NCCS_9947_2021,gb_MW155738_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC11358_2020_Segment_null_Host_Human,gb_MW064840_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_QDX_825_2020_Segment_null_Host_Human,(gb_MW545306_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3723_2021_Segment_null_Host_Human,gb_MW547503_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_EGY_CUNCI_HGC09I039_2020_Segment_null_Host_Human)Node194,(epi_isl_1543980_hCoV_19_Singapore_490_2021,gb_MW565832_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0724_2021_Segment_null_Host_Human)Node198,(gb_MW093451_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_TX_DSHS_0533_2020_Segment_null_Host_Human,gb_MT449654_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1063_2020_Segment_null_Host_Human)Node201,(gb_MW586846_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NY_QDX_4256_2021_Segment_null_Host_Human,gb_MW156732_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC10631_2020_Segment_null_Host_Human)Node206,epi_isl_1631286_hCoV_19_England_CAMC_14E7527_2021,gb_MW486406_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2638_2020_Segment_null_Host_Human,gb_MW035934_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_2214_2020_Segment_null_Host_Human,gb_MW586670_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_CDC_STM_000003618_2021_Segment_null_Host_Human,gb_MW154411_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC6964_2020_Segment_null_Host_Human,gb_LC571023_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_DP0724_Segment_null_Host_Human,gb_MW134116_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_3258_2020_Segment_null_Host_Human,(gb_MW549937_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3900_2021_Segment_null_Host_Human,gb_MW549223_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S3727_2020_Segment_null_Host_Human)Node226,((gb_MW545248_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3654_2021_Segment_null_Host_Human,gb_MW578246_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0808_2021_Segment_null_Host_Human)Node231,gb_MW549830_Organism_Severe_acute_respiratory_syndrome_'..b' "gb_MW064863_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_QDX_779_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005652737786801275\n+ ],\n+ "gb_MW155278_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC12385_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.00557872293700733\n+ ],\n+ "epi_isl_1442952_hCoV_19_Singapore_321_2021": [\n+ "Reference",\n+ false,\n+ 0.00557872293700733\n+ ],\n+ "gb_MW193966_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_nimh_12171_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005612858460151898\n+ ],\n+ "gb_MW462661_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2263_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005587511279835753\n+ ],\n+ "epi_isl_1516887_hCoV_19_Australia_QLD1826_2021": [\n+ "Reference",\n+ false,\n+ 0.005608121500950802\n+ ],\n+ "gb_MW521810_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_TX_QDX_3530_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005660233852045118\n+ ],\n+ "gb_MW490888_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_2295_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005585751083177282\n+ ],\n+ "gb_MW155642_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC13394_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.00559169913114487\n+ ],\n+ "gb_MT847221_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_283_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005610880832638092\n+ ],\n+ "gb_MW592637_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01774_2021_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005650956888864765\n+ ],\n+ "gb_MW578233_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0795_2021_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005579409632217661\n+ ],\n+ "gb_MT447156_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_THA_SI200383_NT_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005586721466300974\n+ ],\n+ "gb_MW543030_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AZ_CDC_IR9A_6594_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005610810413765556\n+ ],\n+ "gb_MW545207_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3609_2021_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005615097964869044\n+ ],\n+ "gb_MT873189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_DPH_00301_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005615096261285128\n+ ],\n+ "gb_MW564882_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14886_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0\n+ ],\n+ "gb_MT811295_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SEARCH_0657_IPL_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005592899537321293\n+ ],\n+ "Node100": [\n+ "Reference",\n+ true,\n+ 0.005590443923023665\n+ ],\n+ "gb_MT811511_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SEARCH_1079_SAN_2020_Segment_null_Host_Human": [\n+ "Reference",\n+ false,\n+ 0.005587435112002911\n+ ]\n+ }\n }\n }\n\\ No newline at end of file\n' |
| b |
| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/merged-segment.json --- a/test-data/summary/merged-segment.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/merged-segment.json Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| b'@@ -1,11 +1,1460 @@\n {\n "nsp7": {\n- "map": [],\n+ "map": [\n+ 11842,\n+ 11845,\n+ 11848,\n+ 11851,\n+ 11854,\n+ 11857,\n+ 11860,\n+ 11863,\n+ 11866,\n+ 11869,\n+ 11872,\n+ 11875,\n+ 11878,\n+ 11881,\n+ 11884,\n+ 11887,\n+ 11890,\n+ 11893,\n+ 11896,\n+ 11899,\n+ 11902,\n+ 11905,\n+ 11908,\n+ 11911,\n+ 11914,\n+ 11917,\n+ 11920,\n+ 11923,\n+ 11926,\n+ 11929,\n+ 11932,\n+ 11935,\n+ 11938,\n+ 11941,\n+ 11944,\n+ 11947,\n+ 11950,\n+ 11953,\n+ 11956,\n+ 11959,\n+ 11962,\n+ 11965,\n+ 11968,\n+ 11971,\n+ 11974,\n+ 11977,\n+ 11980,\n+ 11983,\n+ 11986,\n+ 11989,\n+ 11992,\n+ 11995,\n+ 11998,\n+ 12001,\n+ 12004,\n+ 12007,\n+ 12010,\n+ 12013,\n+ 12016,\n+ 12019,\n+ 12022,\n+ 12025,\n+ 12028,\n+ 12031,\n+ 12034,\n+ 12037,\n+ 12040,\n+ 12043,\n+ 12046,\n+ 12049,\n+ 12052,\n+ 12055,\n+ 12058,\n+ 12061,\n+ 12064,\n+ 12067,\n+ 12070,\n+ 12073,\n+ 12076,\n+ 12079,\n+ 12082,\n+ 12085,\n+ 12088\n+ ],\n "tree": 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| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/merged-site.json --- a/test-data/summary/merged-site.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/merged-site.json Sat Jul 03 08:53:45 2021 +0000 |
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| b |
| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/nsp7-segment.json --- a/test-data/summary/nsp7-segment.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/nsp7-segment.json Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| b'@@ -1,7 +1,1257 @@\n {\n "nsp7": {\n- "map": [],\n+ "map": [\n+ 11842,\n+ 11845,\n+ 11848,\n+ 11851,\n+ 11854,\n+ 11857,\n+ 11860,\n+ 11863,\n+ 11866,\n+ 11869,\n+ 11872,\n+ 11875,\n+ 11878,\n+ 11881,\n+ 11884,\n+ 11887,\n+ 11890,\n+ 11893,\n+ 11896,\n+ 11899,\n+ 11902,\n+ 11905,\n+ 11908,\n+ 11911,\n+ 11914,\n+ 11917,\n+ 11920,\n+ 11923,\n+ 11926,\n+ 11929,\n+ 11932,\n+ 11935,\n+ 11938,\n+ 11941,\n+ 11944,\n+ 11947,\n+ 11950,\n+ 11953,\n+ 11956,\n+ 11959,\n+ 11962,\n+ 11965,\n+ 11968,\n+ 11971,\n+ 11974,\n+ 11977,\n+ 11980,\n+ 11983,\n+ 11986,\n+ 11989,\n+ 11992,\n+ 11995,\n+ 11998,\n+ 12001,\n+ 12004,\n+ 12007,\n+ 12010,\n+ 12013,\n+ 12016,\n+ 12019,\n+ 12022,\n+ 12025,\n+ 12028,\n+ 12031,\n+ 12034,\n+ 12037,\n+ 12040,\n+ 12043,\n+ 12046,\n+ 12049,\n+ 12052,\n+ 12055,\n+ 12058,\n+ 12061,\n+ 12064,\n+ 12067,\n+ 12070,\n+ 12073,\n+ 12076,\n+ 12079,\n+ 12082,\n+ 12085,\n+ 12088\n+ ],\n "tree": 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| b |
| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/nsp8-segment.json --- a/test-data/summary/nsp8-segment.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/nsp8-segment.json Sat Jul 03 08:53:45 2021 +0000 |
| [ |
| b'@@ -1,6 +1,205 @@\n {\n "nsp8": {\n- "map": [],\n+ "map": [\n+ 12091,\n+ 12094,\n+ 12097,\n+ 12100,\n+ 12103,\n+ 12106,\n+ 12109,\n+ 12112,\n+ 12115,\n+ 12118,\n+ 12121,\n+ 12124,\n+ 12127,\n+ 12130,\n+ 12133,\n+ 12136,\n+ 12139,\n+ 12142,\n+ 12145,\n+ 12148,\n+ 12151,\n+ 12154,\n+ 12157,\n+ 12160,\n+ 12163,\n+ 12166,\n+ 12169,\n+ 12172,\n+ 12175,\n+ 12178,\n+ 12181,\n+ 12184,\n+ 12187,\n+ 12190,\n+ 12193,\n+ 12196,\n+ 12199,\n+ 12202,\n+ 12205,\n+ 12208,\n+ 12211,\n+ 12214,\n+ 12217,\n+ 12220,\n+ 12223,\n+ 12226,\n+ 12229,\n+ 12232,\n+ 12235,\n+ 12238,\n+ 12241,\n+ 12244,\n+ 12247,\n+ 12250,\n+ 12253,\n+ 12256,\n+ 12259,\n+ 12262,\n+ 12265,\n+ 12268,\n+ 12271,\n+ 12274,\n+ 12277,\n+ 12280,\n+ 12283,\n+ 12286,\n+ 12289,\n+ 12292,\n+ 12295,\n+ 12298,\n+ 12301,\n+ 12304,\n+ 12307,\n+ 12310,\n+ 12313,\n+ 12316,\n+ 12319,\n+ 12322,\n+ 12325,\n+ 12328,\n+ 12331,\n+ 12334,\n+ 12337,\n+ 12340,\n+ 12343,\n+ 12346,\n+ 12349,\n+ 12352,\n+ 12355,\n+ 12358,\n+ 12361,\n+ 12364,\n+ 12367,\n+ 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| diff -r d7c01f81739b -r bd90215b7d15 test-data/summary/nsp8-site.json --- a/test-data/summary/nsp8-site.json Fri Jun 18 15:37:03 2021 +0000 +++ b/test-data/summary/nsp8-site.json Sat Jul 03 08:53:45 2021 +0000 |
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