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removed:
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| diff -r b4d956eab58d -r bf01a06508a8 test-data/ego.txt --- a/test-data/ego.txt Sun Apr 28 07:28:12 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,1272 +0,0 @@\n-"ID" "Description" "GeneRatio" "BgRatio" "pvalue" "p.adjust" "qvalue" "geneID" "Count"\n-"GO:0090662" "GO:0090662" "ATP hydrolysis coupled transmembrane transport" "39/743" "75/17381" 1.16446168869279e-33 6.02608923898516e-30 3.6159599806776e-30 "ATP6V1C1/ATP5F1/ATP12A/ATP1B3/ATP5C1/ATP5G1/ATP6V1B2/ATP2B1/ATP2A2/ATP5E/ATP6V0A1/ATP1A3/ATP2B4/ATP1B2/ATP1A1/ATP5O/ATP7A/ATP6V1B1/FXYD2/ATP6V1A/ATP5G3/ATP2B3/ATP1A2/ATP6AP1/ATP4A/ATP5D/ATP6V0C/ABCC6/ATP2A3/ATP6V0B/ATP1A4/ATP2A1/ATP1B1/ATP6V1E1/ATP2B2/ATP7B/ATP5G2/ATP5B/ATP5A1" 39\n-"GO:0099132" "GO:0099132" "ATP hydrolysis coupled cation transmembrane transport" "32/743" "57/17381" 2.9113643244268e-29 7.53315518945435e-26 4.52027618792583e-26 "ATP6V1C1/ATP5F1/ATP12A/ATP5C1/ATP5G1/ATP6V1B2/ATP2B1/ATP2A2/ATP5E/ATP6V0A1/ATP2B4/ATP5O/ATP7A/ATP6V1B1/ATP6V1A/ATP5G3/ATP2B3/ATP1A2/ATP6AP1/ATP4A/ATP5D/ATP6V0C/ATP2A3/ATP6V0B/ATP1A4/ATP2A1/ATP6V1E1/ATP2B2/ATP7B/ATP5G2/ATP5B/ATP5A1" 32\n-"GO:0099131" "GO:0099131" "ATP hydrolysis coupled ion transmembrane transport" "33/743" "69/17381" 4.07645049844851e-27 7.03187710982369e-24 4.21948384927127e-24 "ATP6V1C1/ATP5F1/ATP12A/ATP5C1/ATP5G1/ATP6V1B2/ATP2B1/ATP2A2/ATP5E/ATP6V0A1/ATP2B4/ATP5O/ATP7A/ATP6V1B1/ATP6V1A/ATP5G3/ATP2B3/ATP1A2/ATP6AP1/ATP4A/ATP5D/ATP6V0C/ABCC6/ATP2A3/ATP6V0B/ATP1A4/ATP2A1/ATP6V1E1/ATP2B2/ATP7B/ATP5G2/ATP5B/ATP5A1" 33\n-"GO:1903522" "GO:1903522" "regulation of blood circulation" "62/743" "289/17381" 1.33489686824835e-26 1.7270228232963e-23 1.03630151614016e-23 "BDKRB2/CASQ1/CALM1/CACNB4/ADM/CACNA1C/CACNG1/AVPR1A/CALM3/AGT/ATP1B3/AVPR1B/CALCA/AKT1/ATP2B1/ASIC2/ATP2A2/ASPH/ADRA1D/ADRA1A/ATP1A3/ATP2B4/ATP1B2/ATP1A1/ADRA2B/ADORA3/CAMK2D/CAV3/ADRA2C/CALM2/CASR/BMPR2/CACNA1F/CACNA2D1/FXYD2/AGTR1/ADRA1B/ADA/ATP2B3/ADRA2A/ATP1A2/ADRB1/CACNA1S/CAV1/ATP2A3/CD38/CACNA1B/CACNA1D/ATP1A4/ATP2A1/ATP1B1/CACNB1/AGTR2/CASQ2/ATP2B2/GRK2/ANK2/AVPR2/AVP/CACNB2/CACNB3/ADORA1" 62\n-"GO:0010038" "GO:0010038" "response to metal ion" "63/743" "327/17381" 2.60830375607504e-24 2.69959438753766e-21 1.61989391166765e-21 "APP/CDKN1B/ATF1/CALM1/C1QA/AQP2/CDK1/CDK4/CASP9/CALM3/FAS/ADCY1/CCNB1/AKT1/ACTA1/TSPO/BAD/BGLAP/ANXA7/AOC1/ADD1/CAMK2D/ACO1/ASCL1/BSG/ENTPD6/CALM2/CASR/ATP7A/CAPN3/ALAD/CAT/ALOX15/ATP5D/CASP8/CAV1/BCL2/AQP3/ABAT/AQP9/BRAF/ANK3/APBB1/CD14/CALR/AQP1/PARP1/CASQ2/BMP6/APOBEC1/CDH1/ATP7B/CASP3/CA2/ALOX5AP/ARG1/AANAT/BNIP3/CCND1/ATF4/ANXA11/CD86/B2M" 63\n-"GO:0006164" "GO:0006164" "purine nucleotide biosynthetic process" "56/743" "260/17381" 3.30220867429573e-24 2.84815498158006e-21 1.70903782266182e-21 "ATP5F1/ALDOA/CALM1/ADM/ADRB2/ADK/CALM3/ACAT1/ADCY1/CALCA/ATP5C1/ATP5G1/ATP5E/ADCY6/ATP6V0A1/APOE/AMPD3/ADCY5/ADCY9/ADCY7/ADORA3/ATP5I/AMPD1/CALM2/ADRB3/ABCA1/ATP5O/CALCR/APLP1/ATIC/ATP5G3/ADCYAP1R1/ADA/ADRA2A/ADRB1/ATP5D/ATP5J/ADORA2B/APRT/ACR/AMPD2/AQP1/ADCY8/PARP1/ADCY3/ADCYAP1/ADORA2A/ATP5G2/AVPR2/AVP/AK2/ATP5B/ATP5A1/ADSL/ADCY2/ADSS" 56\n-"GO:0072522" "GO:0072522" "purine-containing compound biosynthetic process" "57/743" "273/17381" 6.63681802678279e-24 4.90650475551442e-21 2.94415235774575e-21 "ATP5F1/ALDOA/CALM1/ADM/ADRB2/ADK/CALM3/ACAT1/ADCY1/CALCA/ATP5C1/ATP5G1/ATP5E/ADCY6/ATP6V0A1/APOE/AMPD3/ADCY5/ADCY9/ADCY7/ADORA3/ATP5I/AMPD1/CALM2/AMD1/ADRB3/ABCA1/ATP5O/CALCR/APLP1/ATIC/ATP5G3/ADCYAP1R1/ADA/ADRA2A/ADRB1/ATP5D/ATP5J/ADORA2B/APRT/ACR/AMPD2/AQP1/ADCY8/PARP1/ADCY3/ADCYAP1/ADORA2A/ATP5G2/AVPR2/AVP/AK2/ATP5B/ATP5A1/ADSL/ADCY2/ADSS" 57\n-"GO:0009152" "GO:0009152" "purine ribonucleotide biosynthetic process" "55/743" "257/17381" 1.19262814877841e-23 7.71481333741034e-21 4.62928031433725e-21 "ATP5F1/ALDOA/CALM1/ADM/ADRB2/ADK/CALM3/ACAT1/ADCY1/CALCA/ATP5C1/ATP5G1/ATP5E/ADCY6/ATP6V0A1/APOE/AMPD3/ADCY5/ADCY9/ADCY7/ADORA3/ATP5I/AMPD1/CALM2/ADRB3/ABCA1/ATP5O/CALCR/APLP1/ATIC/ATP5G3/ADCYAP1R1/ADRA2A/ADRB1/ATP5D/ATP5J/ADORA2B/APRT/ACR/AMPD2/AQP1/ADCY8/PARP1/ADCY3/ADCYAP1/ADORA2A/ATP5G2/AVPR2/AVP/AK2/ATP5B/ATP5A1/ADSL/ADCY2/ADSS" 55\n-"GO:0009260" "GO:0009260" "ribonucleotide biosynthetic process" "56/743" "270/17381" 2.36392621096328e-23 1'..b' 0.00880315501458506 0.00528234066473957 "CD6/AHCY/BTK/SERPINC1/C3/ADCYAP1/CD28" 7\n-"GO:0043268" "GO:0043268" "positive regulation of potassium ion transport" "7/743" "43/17381" 0.00213146922382127 0.00880315501458506 0.00528234066473957 "ATP1B3/ACTN2/ATP1B2/ADRA2A/ATP1B1/ANK2/ADORA1" 7\n-"GO:0034612" "GO:0034612" "response to tumor necrosis factor" "24/743" "297/17381" 0.0021802803644224 0.00899039911225969 0.0053946966450376 "BIRC2/CASP1/CASP4/FAS/CALCA/AKT1/CD27/APOA1/TNFRSF8/ZFP36L2/CASP8/TNFSF8/CD40/CD14/BIRC3/ZFP36L1/CASP3/BRCA1/CD58/APOB/ADAM10/CD40LG/TNFRSF17/CD70" 24\n-"GO:0051170" "GO:0051170" "nuclear import" "24/743" "297/17381" 0.0021802803644224 0.00899039911225969 0.0053946966450376 "APP/CDK1/AGT/AKT1/BMPR1A/AGER/RERE/CD27/CD36/CBLB/BMP7/CDKN1A/BCL6/RHOA/BCL3/AGTR2/PARP1/ARNTL/BMP6/CDH1/APOD/BMP4/PTTG1IP/ANGPT1" 24\n-"GO:0022600" "GO:0022600" "digestive system process" "11/743" "94/17381" 0.00221072001916424 0.00910865931462974 0.0054656587801999 "SCARB1/APOA4/SERPINA3/ACO1/CD36/APOA1/ADRA2A/CCKBR/APOA2/AQP1/AQP5" 11\n-"GO:0043900" "GO:0043900" "regulation of multi-organism process" "29/743" "385/17381" 0.00232744190368524 0.00958195055813135 0.00574965759399695 "BIRC2/ANXA2/CD4/ARG2/CD74/ACVR1B/APOE/BAD/CCNT1/CRISP1/ADAR/CD36/PRDM1/CDK9/ADA/ADARB1/CAMP/CAV1/BCL2/CALR/BST2/BIRC3/BMP6/CAV2/ARG1/CD28/APCS/ARHGDIB/C1QBP" 29\n-"GO:0051851" "GO:0051851" "modification by host of symbiont morphology or physiology" "9/743" "68/17381" 0.00233877722671352 0.00959818820817529 0.00575940100973651 "ANXA2/AZU1/APOE/CCNT1/CAMP/AQP1/CAV2/ARG1/APCS" 9\n-"GO:0002829" "GO:0002829" "negative regulation of type 2 immune response" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "ANXA1/ARG2/BCL6/ARG1" 4\n-"GO:0006534" "GO:0006534" "cysteine metabolic process" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "CDO1/AHCY/CBS/AGXT" 4\n-"GO:0010663" "GO:0010663" "positive regulation of striated muscle cell apoptotic process" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "AGT/CAMK2D/BNIP3/CAMK2A" 4\n-"GO:0010666" "GO:0010666" "positive regulation of cardiac muscle cell apoptotic process" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "AGT/CAMK2D/BNIP3/CAMK2A" 4\n-"GO:0030299" "GO:0030299" "intestinal cholesterol absorption" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "APOA4/CD36/APOA1/APOA2" 4\n-"GO:0034111" "GO:0034111" "negative regulation of homotypic cell-cell adhesion" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "CD9/ALOX12/ABAT/CEACAM1" 4\n-"GO:0036295" "GO:0036295" "cellular response to increased oxygen levels" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "FAS/ATP6V1A/ATP6AP1/CAV1" 4\n-"GO:0050667" "GO:0050667" "homocysteine metabolic process" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "AHCY/BLMH/CBS/BHMT" 4\n-"GO:0060712" "GO:0060712" "spongiotrophoblast layer development" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "ADM/AKT1/ASCL2/ZFP36L1" 4\n-"GO:0098856" "GO:0098856" "intestinal lipid absorption" "4/743" "14/17381" 0.00235178795129783 0.00959818820817529 0.00575940100973651 "APOA4/CD36/APOA1/APOA2" 4\n-"GO:0072006" "GO:0072006" "nephron development" "14/743" "138/17381" 0.00236596019635881 0.00964841924047031 0.00578954218345028 "BMP2/CALB1/AGT/ACAT1/ACTA2/CD34/BMP7/BCL2/AGTR2/AQP1/ANGPT2/JAG1/BMP4/ANGPT1" 14\n-"GO:0046822" "GO:0046822" "regulation of nucleocytoplasmic transport" "19/743" "216/17381" 0.00237922003745677 0.00969485330223527 0.00581740498176335 "APP/CDK1/BMPR1A/AGER/CD27/CD36/BMP7/CDKN1A/BARD1/RHOA/BCL3/AGTR2/PARP1/BMP6/CDH1/APOD/CDK5/BMP4/ANGPT1" 19\n-"GO:1903793" "GO:1903793" "positive regulation of anion transport" "7/743" "44/17381" 0.00244292788783975 0.00994661826874171 0.00596847676436065 "AVPR1A/AGT/APOE/ABAT/CCK/ADORA2A/AVP" 7\n' |
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| diff -r b4d956eab58d -r bf01a06508a8 test-data/genedf.txt --- a/test-data/genedf.txt Sun Apr 28 07:28:12 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,1037 +0,0 @@\n-"SYMBOL" "ENTREZID"\n-"ARX" "170302"\n-"CDR1" "1038"\n-"TP73" "7161"\n-"TCEAL7" "56849"\n-"SNX12" "29934"\n-"CSAG4" "100130935"\n-"MAGEC2" "51438"\n-"TGIF2LX" "90316"\n-"LAMC2" "3918"\n-"FGF13" "2258"\n-"KLHL34" "257240"\n-"SLITRK2" "84631"\n-"ACTA1" "58"\n-"CITED1" "4435"\n-"BCOR" "54880"\n-"PBDC1" "51260"\n-"TTC39A" "22996"\n-"KCNE5" "23630"\n-"TAF7L" "54457"\n-"GABRA3" "2556"\n-"PAGE2B" "389860"\n-"PRRX1" "5396"\n-"IL12RB2" "3595"\n-"MAGEB6" "158809"\n-"BARHL2" "343472"\n-"ESRRG" "2104"\n-"MAGEB16" "139604"\n-"NGF" "4803"\n-"FOXD2" "2306"\n-"HTR2C" "3358"\n-"FAM47B" "170062"\n-"LINC00982" "440556"\n-"PGBD5" "79605"\n-"FAM47C" "442444"\n-"MAGEA1" "4100"\n-"MID1" "4281"\n-"TAL1" "6886"\n-"MIR5087" "100847044"\n-"FAM47A" "158724"\n-"NPHP4" "261734"\n-"GPRASP1" "9737"\n-"MIR503" "574506"\n-"RSG1" "79363"\n-"ARSH" "347527"\n-"OBSCN-AS1" "574407"\n-"TIMP1" "7076"\n-"KIAA1324" "57535"\n-"NBPF13P" "644861"\n-"HES5" "388585"\n-"FHL1" "2273"\n-"CAMK2N1" "55450"\n-"DCAF12L1" "139170"\n-"CEP85" "64793"\n-"BTBD19" "149478"\n-"ALX3" "257"\n-"PAGE3" "139793"\n-"SEMA6C" "10500"\n-"TBX15" "6913"\n-"TACSTD2" "4070"\n-"OPRD1" "4985"\n-"MANEAL" "149175"\n-"CFAP45" "25790"\n-"UBL4B" "164153"\n-"PLCH2" "9651"\n-"H2BFM" "286436"\n-"NUDT10" "170685"\n-"BEST4" "266675"\n-"CCNQ" "92002"\n-"MIR507" "574512"\n-"COL11A1" "1301"\n-"SLC30A2" "7780"\n-"GNG4" "2786"\n-"MIR205HG" "642587"\n-"IRS4" "8471"\n-"OR2M3" "127062"\n-"MIR890" "100126303"\n-"XKR8" "55113"\n-"DMBX1" "127343"\n-"PHKA1" "5255"\n-"HPCAL4" "51440"\n-"UTP14A" "10813"\n-"AJAP1" "55966"\n-"CIART" "148523"\n-"LRRC7" "57554"\n-"COL9A2" "1298"\n-"ARTN" "9048"\n-"RUNX3" "864"\n-"LHX9" "56956"\n-"COL24A1" "255631"\n-"PCSK9" "255738"\n-"TRIM11" "81559"\n-"WASF2" "10163"\n-"TEX13A" "56157"\n-"MIR223" "407008"\n-"EGFL6" "25975"\n-"VENTXP1" "139538"\n-"MIR106A" "406899"\n-"MCOLN2" "255231"\n-"ARHGAP36" "158763"\n-"ZNF185" "7739"\n-"ERAS" "3266"\n-"LCE1A" "353131"\n-"OR2T29" "343563"\n-"PAGE1" "8712"\n-"WDR64" "128025"\n-"MST1L" "11223"\n-"TMEM35A" "59353"\n-"C1QTNF12" "388581"\n-"MAGEB2" "4113"\n-"MIR892A" "100126342"\n-"CXorf51B" "100133053"\n-"CAPN2" "824"\n-"PRAF2" "11230"\n-"DMRTA2" "63950"\n-"CR1L" "1379"\n-"PAGE5" "90737"\n-"AMER1" "139285"\n-"SLC2A1" "6513"\n-"TTC34" "100287898"\n-"SLITRK4" "139065"\n-"BRDTP1" "643486"\n-"MCF2" "4168"\n-"ACTRT2" "140625"\n-"TCEAL6" "158931"\n-"MIR548AP" "100847084"\n-"MIR200B" "406984"\n-"LUZP4" "51213"\n-"MAGEA4" "4103"\n-"TSPYL2" "64061"\n-"OR6K2" "81448"\n-"VCX2" "51480"\n-"TEX13C" "100129520"\n-"OR2M5" "127059"\n-"VCX3B" "425054"\n-"TCEAL4" "79921"\n-"CAMTA1" "23261"\n-"SYTL1" "84958"\n-"ADAMTS4" "9507"\n-"SUSD4" "55061"\n-"OR2C3" "81472"\n-"PODN" "127435"\n-"NLGN4X" "57502"\n-"NT5C1A" "84618"\n-"CLSTN1" "22883"\n-"DYNLT3" "6990"\n-"EDN2" "1907"\n-"MIR510" "574515"\n-"OR1C1" "26188"\n-"BEND2" "139105"\n-"GIPC2" "54810"\n-"H6PD" "9563"\n-"MAGEA10-MAGEA5" "100533997"\n-"BRWD3" "254065"\n-"LINC01341" "149134"\n-"SLC16A2" "6567"\n-"FAAP20" "199990"\n-"FAM163A" "148753"\n-"HNRNPCL2" "440563"\n-"FOXD3" "27022"\n-"PGRMC1" "10857"\n-"NUF2" "83540"\n-"ZDHHC15" "158866"\n-"NEXMIF" "340533"\n-"NADK" "65220"\n-"LELP1" "149018"\n-"MT1HL1" "645745"\n-"TTC3P1" "286495"\n-"FAM229A" "100128071"\n-"ADGRB2" "576"\n-"TGIF2LY" "90655"\n-"MIR5191" "100847050"\n-"SATL1" "340562"\n-"SAGE1" "55511"\n-"NAV1" "89796"\n-"MXRA5" "25878"\n-"EBNA1BP2" "10969"\n-"TNFRSF25" "8718"\n-"ASB12" "142689"\n-"MAGEE2" "139599"\n-"YOD1" "55432"\n-"AR" "367"\n-"TDRD5" "163589"\n-"MAGEA5" "4104"\n-"HEPH" "9843"\n-"RPS6KA3" "6197"\n-"AFF2" "2334"\n-"MIR4251" "100422968"\n-"PNMA5" "114824"\n-"MIR4254" "100423028"\n-"S100A7L2" "645922"\n-"NKAP" "79576"\n-"MAGEB3" "4114"\n-"XAGE5" "170627"\n-"SSX9" "280660"\n-"XKRX" "402415"\n-"XAGE3" "170626"\n-"LINC01777" "284661"\n-"AGRN" "375790"\n-"PRKX" "5613"\n-"NTRK1" "4914"\n-"SLC6A9" "6536"\n-"TNFRSF18" "8784"\n-"MAGEB18" "286514"\n-"GRIA3" "2892"\n-"CAPN8" "388743"\n-"SOWAHD" "347454"\n-"VSIG1" "340547"\n-"EDEM3" "80267"\n-"HIST3H2A" "92815"\n-"GPM6B" "2824"\n-"CACNA1E" "777"\n-"DIRAS3" "9077"\n-"PLXNA2" "5362"\n-"GLIS1" "148979"\n-"ASTN1" "460"\n-"LOC389895" "389895"\n-"MID1IP1" "58526"\n-"SPANXN5" "494197"\n-"ATRX" "546"\n-"MAGEE1" "57692"\n-"MMP23B" "8'..b'-"ZMYM1" "79830"\n-"ZNF75D" "7626"\n-"ARHGEF10L" "55160"\n-"MAGEB10" "139422"\n-"ZNF691" "51058"\n-"PCP4L1" "654790"\n-"COX20" "116228"\n-"OR2T34" "127068"\n-"HDAC1" "3065"\n-"MIR29C" "407026"\n-"CPT2" "1376"\n-"STARD8" "9754"\n-"MIR5008" "100847072"\n-"MARCKSL1" "65108"\n-"PIGK" "10026"\n-"RTL3" "203430"\n-"RAB33A" "9363"\n-"FAM110D" "79927"\n-"KIF1B" "23095"\n-"DRAXIN" "374946"\n-"ACKR1" "2532"\n-"SPRR2E" "6704"\n-"BRINP3" "339479"\n-"MASP2" "10747"\n-"PADI2" "11240"\n-"SYT6" "148281"\n-"SPATA6" "54558"\n-"NUDT11" "55190"\n-"SAMD11" "148398"\n-"AGTR2" "186"\n-"LINC01278" "92249"\n-"C1orf53" "388722"\n-"FAM71A" "149647"\n-"OR14I1" "401994"\n-"CHIT1" "1118"\n-"GABRD" "2563"\n-"SELE" "6401"\n-"BCAN" "63827"\n-"MIR3658" 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