| Previous changeset 12:2ff1bef33bdd (2012-11-30) Next changeset 14:2fb3be685c17 (2012-11-30) |
|
Commit message:
Uploaded |
|
added:
bsmap_meth_caller.sh |
| b |
| diff -r 2ff1bef33bdd -r c01ef10d055c bsmap_meth_caller.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bsmap_meth_caller.sh Fri Nov 30 09:14:58 2012 -0500 |
| [ |
| @@ -0,0 +1,32 @@ +#!/bin/bash +# +# Galaxy wrapper for BSMAP Methylation Caller +# + +set -e + +#get parameters + +until [ $# -eq 0 ] +do + case $1 in + input=*) + input=${1#input=} + ;; + method=*) + method=${1#method=} + ;; + output=*) + output=${1#output=} + ;; + tempdir=*) + tempdir=${1#tempdir=} + ;; + ref=*) + ref=${1#ref=} + ;; + esac + shift +done + +methratio.py -o $output -d $ref -q $input \ No newline at end of file |