| Previous changeset 4:d2df79922531 (2024-09-08) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit c508c3af0f4121dcc38e0be63db00a604e997b8a |
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modified:
macros.xml samtools_fixmate.xml |
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| diff -r d2df79922531 -r c05afbeaf42d macros.xml --- a/macros.xml Sun Sep 08 03:26:03 2024 +0000 +++ b/macros.xml Thu Jun 19 12:59:44 2025 +0000 |
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| @@ -11,8 +11,8 @@ please only bump the minor version in order to let the requirement version catch up eventually). To find the tools check: `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> - <token name="@TOOL_VERSION@">1.20</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@TOOL_VERSION@">1.21</token> + <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">22.05</token> <token name="@FLAGS@"><![CDATA[ #set $flags = 0 @@ -220,6 +220,7 @@ <xml name="citations"> <citations> <citation type="doi">10.1093/gigascience/giab008</citation> + <citation type="doi">10.1093/bioinformatics/btr076</citation> </citations> </xml> <xml name="version_command"> |
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| diff -r d2df79922531 -r c05afbeaf42d samtools_fixmate.xml --- a/samtools_fixmate.xml Sun Sep 08 03:26:03 2024 +0000 +++ b/samtools_fixmate.xml Thu Jun 19 12:59:44 2025 +0000 |
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| @@ -61,13 +61,13 @@ <!-- test_cmd($opts,out=>'fixmate/4_reverse_read_pp_equal.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -O sam $$opts{path}/fixmate/4_reverse_read_pp_equal.sam -");--> <test> <param name="bamfile" value="5_ct.sam" ftype="sam" /> - <param name="tempcigar" value="-c" /> + <param name="tempcigar" value="true" /> <output name="output" file="5_ct.bam.expected" ftype="qname_sorted.bam" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'fixmate/5_ct.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -cO sam $$opts{path}/fixmate/5_ct.sam -");--> <test> <param name="bamfile" value="6_ct_replace.sam" ftype="sam" /> - <param name="tempcigar" value="-c" /> + <param name="tempcigar" value="true" /> <output name="output" file="6_ct_replace.bam.expected" ftype="qname_sorted.bam" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'fixmate/6_ct_replace.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -cO sam $$opts{path}/fixmate/6_ct_replace.sam -");--> |