| Previous changeset 4:cbd6577652a5 (2017-12-20) Next changeset 6:518b780b8aa5 (2017-12-20) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
| b |
| diff -r cbd6577652a5 -r c0d5ef08a84c tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Dec 20 05:03:14 2017 -0500 |
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| @@ -0,0 +1,49 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bwa" version="0.7.12"> + <repository changeset_revision="dcae4134cd62" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="bedtools" version="2.24"> + <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="1.2"> + <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="R" version="3.1.2"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="Perl" version="5.18"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="srnapipe" version="0.0.1"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="R" version="3.1.2" /> + </repository> + <package>https://depot.galaxyproject.org/software/plotrix/plotrix_3.6_src_all.tar.gz</package> + <package>https://depot.galaxyproject.org/software/bioconductor-sushi/bioconductor-sushi_1.14.0_src_all.tar.gz</package> + <package>https://depot.galaxyproject.org/software/RColorBrewer/RColorBrewer_1.1-2_src_all.tar.gz</package> + <package>https://depot.galaxyproject.org/software/ggplot2/ggplot2_1.0.1_src_all.tar.gz</package> + </action> + </actions> + </install> + </package> + <package name="srnapipe" version="0.0.1"> + <install version="1.0"> + <actions> + <action type="setup_perl_environment"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="Perl" version="5.18" /> + </repository> + <package>https://depot.galaxyproject.org/software/perl-statistics-r/perl-statistics-r_0.34_src_all.tar.gz</package> + <package>https://cpan.metacpan.org/authors/id/Y/YA/YANICK/Parallel-ForkManager-1.19.tar.gz</package> + <package>https://cpan.metacpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.34.tar.gz</package> + <package>https://cpan.metacpan.org/authors/id/J/JV/JV/Getopt-Long-2.50.tar.gz</package> + <package>https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/String-Random-0.29.tar.gz</package> + </action> + </actions> + </install> + </package> +</tool_dependency> |