| Previous changeset 1:f265e26ab550 (2014-10-24) Next changeset 3:7cc220e8c2ac (2014-10-24) |
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Commit message:
Uploaded |
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added:
test-data/Galaxy-Workflow-microsatellite_profiling.ga |
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| diff -r f265e26ab550 -r c12db4ec1619 test-data/Galaxy-Workflow-microsatellite_profiling.ga --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Galaxy-Workflow-microsatellite_profiling.ga Fri Oct 24 15:44:47 2014 -0400 |
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| b'@@ -0,0 +1,764 @@\n+{\n+ "a_galaxy_workflow": "true", \n+ "annotation": "Profile length of microsatellites or short tandem repeats from short read data", \n+ "format-version": "0.1", \n+ "name": "microsatellite_profiling", \n+ "steps": {\n+ "0": {\n+ "annotation": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites", \n+ "id": 0, \n+ "input_connections": {}, \n+ "inputs": [\n+ {\n+ "description": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites", \n+ "name": "single end fastq"\n+ }\n+ ], \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 200, \n+ "top": 274.765625\n+ }, \n+ "tool_errors": null, \n+ "tool_id": null, \n+ "tool_state": "{\\"name\\": \\"single end fastq\\"}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "user_outputs": []\n+ }, \n+ "1": {\n+ "annotation": "need to be prepared by user using TR genome profiling", \n+ "id": 1, \n+ "input_connections": {}, \n+ "inputs": [\n+ {\n+ "description": "need to be prepared by user using TR genome profiling", \n+ "name": "TR in genome"\n+ }\n+ ], \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 177, \n+ "top": 412.953125\n+ }, \n+ "tool_errors": null, \n+ "tool_id": null, \n+ "tool_state": "{\\"name\\": \\"TR in genome\\"}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "user_outputs": []\n+ }, \n+ "2": {\n+ "annotation": "https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", \n+ "id": 2, \n+ "input_connections": {}, \n+ "inputs": [\n+ {\n+ "description": "https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", \n+ "name": "error rate file"\n+ }\n+ ], \n+ "name": "Input dataset", \n+ "outputs": [], \n+ "position": {\n+ "left": 1412.875, \n+ "top": 384.671875\n+ }, \n+ "tool_errors": null, \n+ "tool_id": null, \n+ "tool_state": "{\\"name\\": \\"error rate file\\"}", \n+ "tool_version": null, \n+ "type": "data_input", \n+ "user_outputs": []\n+ }, \n+ "3": {\n+ 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[\n+ {\n+ "name": "out_file1", \n+ "type": "input"\n+ }\n+ ], \n+ "position": {\n+ "left": 1186, \n+ "top": 1405.953125\n+ }, \n+ "post_job_actions": {\n+ "RenameDatasetActionout_file1": {\n+ "action_arguments": {\n+ "newname": "TR profile"\n+ }, \n+ "action_type": "RenameDatasetAction", \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "tool_errors": null, \n+ "tool_id": "Filter1", \n+ "tool_state": "{\\"input\\": \\"null\\", \\"__rerun_remap_job_id__\\": null, \\"header_lines\\": \\"\\\\\\"0\\\\\\"\\", \\"cond\\": \\"\\\\\\"c2.count(\\\\\\\\\\\\\\",\\\\\\\\\\\\\\")>=4\\\\\\"\\", \\"__page__\\": 0}", \n+ "tool_version": "1.1.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }, \n+ "20": {\n+ "annotation": "", \n+ "id": 20, \n+ "input_connections": {\n+ "microsat_error_profile": {\n+ "id": 2, \n+ "output_name": "output"\n+ }, \n+ "microsat_raw": {\n+ "id": 19, \n+ "output_name": "out_file1"\n+ }\n+ }, \n+ "inputs": [], \n+ "name": "Correct genotype for microsatellite errors", \n+ "outputs": [\n+ {\n+ "name": "microsat_corrected", \n+ "type": "tabular"\n+ }\n+ ], \n+ "position": {\n+ "left": 1591.328125, \n+ "top": 456.8125\n+ }, \n+ "post_job_actions": {\n+ "RenameDatasetActionmicrosat_corrected": {\n+ "action_arguments": {\n+ "newname": "Genotype file"\n+ }, \n+ "action_type": "RenameDatasetAction", \n+ "output_name": "microsat_corrected"\n+ }\n+ }, \n+ "tool_errors": null, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/GenotypeSTR/2.0.0", \n+ "tool_state": "{\\"microsat_raw\\": \\"null\\", \\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"microsat_error_profile\\": \\"null\\", \\"expectedminorallele\\": \\"\\\\\\"0.5\\\\\\"\\"}", \n+ "tool_version": "2.0.0", \n+ "type": "tool", \n+ "user_outputs": []\n+ }\n+ }\n+}\n\\ No newline at end of file\n' |