| Previous changeset 0:45d215f2be74 (2018-12-29) |
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Commit message:
Uploaded |
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modified:
blupcal.xml |
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| diff -r 45d215f2be74 -r c1c85170db1b blupcal.xml --- a/blupcal.xml Sat Dec 29 18:44:05 2018 -0500 +++ b/blupcal.xml Sun Dec 30 01:39:11 2018 -0500 |
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| @@ -3,6 +3,7 @@ <requirements> <requirement type="package" version="1.1_18_1">r-lme4</requirement> <requirement type="package" version="1.20.2">r-getopt</requirement> + <requirement type="package" version="1.10_1">r-arm</requirement> </requirements> <command interpreter="bash"> ./blupcal.sh $__tool_directory__ $galaxy_tabular_file $galaxy_replication_vector_column_index $galaxy_genotype_vector_column_index $galaxy_first_y_vector_column_index $galaxy_last_y_vector_column_index $galaxy_design_conditional.galaxy_design @@ -139,6 +140,25 @@ </test> </tests> <help> + +.. class:: infomark + +**BLUP/BLUE calculator, based on lme4 R package version 1.1_18_1** + +.. class:: infomark + +**Galaxy integration** Provided by EiB platform and GOBii and Angel Villahoz-Baleta (Cornell Univ) + +.. class:: infomark + +**Integration contributors** Juan David Arbelaez Velez (IRRI), Dereeper Alexis, Juan Burgueno (CIMMYT) + +.. class:: infomark + +**Support** For any questions about this tool, please send an e-mail to u.rosyara@cgiar.org + + + **What it does** This function calculates BLUP, BLUE and means for Y variable based on the model specified by the user. @@ -176,10 +196,8 @@ - Variable 1, Genotype : Variable 1 are treated as random both BLUP and BLUE calculations. - Variable 2, Genotype : Variable 2, Variable 1 : Variable 2, Genotype : Variable 1 : Variable 2 are treated as random effects for both BLUP and BLUE calculations. - -**Citation** -Douglas Bates, Martin Maechler, Ben Bolker, Steve Walker (2015). Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software, 67(1), 1-48. - -**Author(s)** </help> + <citations> + <citation type="doi">10.18637/jss.v067.i01</citation> + </citations> </tool> |