| Previous changeset 13:febb6def95cb (2016-04-12) Next changeset 15:876af85d782c (2016-04-12) |
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Commit message:
Uploaded |
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modified:
SAINT_preprocessing.py |
| b |
| diff -r febb6def95cb -r c22c1209e65f SAINT_preprocessing.py --- a/SAINT_preprocessing.py Tue Apr 12 14:40:42 2016 -0400 +++ b/SAINT_preprocessing.py Tue Apr 12 14:55:25 2016 -0400 |
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| @@ -57,19 +57,7 @@ for input_line in read_infile: input_line = input_line.strip() temp = input_line.split('\t') - if "Accession Number" in str(temp): - if baits[i] in temp: - number_bait = temp.index(str(baits[i])) - number_bait = number_bait - 9 - bait_cache.append((number_bait, str(bait_line))) - # Locates the Bait names in the column names and then sets the Baits in the - # correct order in the cache thus the - 9 because the baits start at the 9th - # column. - else: - print "Error: bad bait " + str(baits[i]) - sys.exit() - else: - pass + bait_cache.append((number_bait, str(bait_line))) i = i + 3 bait_cache.sort() @@ -213,7 +201,7 @@ elif "_MOUSE" in prot_id: proteins.append(prot_id) else: - print "Accession must be uniprot ID or gene name" + print "Accession must be uniprot ID or gene" return ReturnValue2(data, proteins, header) |