| Previous changeset 21:9c843eb06416 (2017-01-27) Next changeset 23:e2fbdfacec1d (2017-01-27) |
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Commit message:
Uploaded |
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modified:
report_clonality/r_wrapper.sh |
| b |
| diff -r 9c843eb06416 -r c28da767799f report_clonality/r_wrapper.sh --- a/report_clonality/r_wrapper.sh Fri Jan 27 03:58:45 2017 -0500 +++ b/report_clonality/r_wrapper.sh Fri Jan 27 04:24:41 2017 -0500 |
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| @@ -258,14 +258,14 @@ echo "</table></div>" >> $outputFile else echo "in new" - clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.csv)" + clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.txt)" echo "<div class='tabbertab' title='$sample'>" >> $outputFile echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile echo "<table border = 1>" >> $outputFile while IFS=, read type count do echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile - done < $outputDir/lymphclon_coincidences_$sample.csv + done < $outputDir/lymphclon_coincidences_$sample.txt echo "</table></div>" >> $outputFile fi done |