| Previous changeset 0:9c02f5e8e657 (2015-10-07) Next changeset 2:8220dba15923 (2015-12-28) |
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Commit message:
changed output to bed format |
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modified:
snp_to_bed.xml |
| b |
| diff -r 9c02f5e8e657 -r c5195904b225 snp_to_bed.xml --- a/snp_to_bed.xml Wed Oct 07 15:17:51 2015 -0400 +++ b/snp_to_bed.xml Mon Nov 09 14:56:21 2015 -0500 |
| b |
| @@ -1,12 +1,12 @@ -<tool id="snp_to_bed" name="snp location to bed format" version="0.1"> - <description>removes unwanted column</description> +<tool id="snp_to_bed" name="snp location to bed format" version="0.3"> + <description>convert SNP to interval</description> <command> cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1 </command> <inputs> <param name="input1" type="data" label="input file"/> </inputs> <outputs> - <data name="out_file1" format="input" metadata_source="input1"/> + <data name="out_file1" format="bed" metadata_source="input1"/> </outputs> <tests> </tests> |