Galaxy |

Changeset 15:c543c41377dd (2020-03-11)

Previous changeset 14:1e622e371512 (2020-02-05) Next changeset 16:bc027a1c0952 (2020-03-24)

Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"

diff -r 1e622e371512 -r c543c41377dd hicCorrectMatrix.xml
--- a/hicCorrectMatrix.xml Wed Feb 05 19:39:47 2020 -0500
+++ b/hicCorrectMatrix.xml Wed Mar 11 06:53:35 2020 -0400

[

@@ -7,7 +7,7 @@
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
         ln -s '$matrix_h5_cooler' 'matrix.$matrix_h5_cooler.ext' &&
-
+
         @BINARY@
             $mode.mode_selector
             --matrix 'matrix.$matrix_h5_cooler.ext'
@@ -22,7 +22,7 @@
                 #if $mode.correctionMethod.correctionMethod_selector == 'ice':
                     --correctionMethod ICE
                     --iterNum $mode.correctionMethod.iterNum
-
+

                     #if $mode.correctionMethod.filterThreshold_low and $mode.correctionMethod.filterThreshold_large:
                         --filterThreshold $mode.correctionMethod.filterThreshold_low $mode.correctionMethod.filterThreshold_large
@@ -157,7 +157,7 @@

             <param name="mode_selector" value="correct"/>
             <param name='correctionMethod_selector' value='kr'/>
-
+
             <output name="outFileName" ftype="h5">
                 <assert_contents>
                     <has_h5_keys keys='correction_factors,intervals,matrix'/>
@@ -169,7 +169,7 @@

             <param name="mode_selector" value="correct"/>
             <param name='correctionMethod_selector' value='kr'/>
-
+
             <output name="outFileName" ftype="cool">
                 <assert_contents>
                     <has_h5_keys keys='bins,chroms,indexes,pixels'/>
@@ -254,7 +254,7 @@
Also, low scoring bins can be caused by absence of a restriction site in the bin or because the restriction
site is present but the restriction enzyme did not cut. The valley between the two peaks in the
histogram is set by default as cutoff threshold.
-However, it is important to revise this as in some cases the selected value could not be correct.
+However, it is important to revise this as in some cases the selected value could not be correct.

.. image:: $PATH_TO_IMAGES/diagnostic_plot.png

diff -r 1e622e371512 -r c543c41377dd macros.xml
--- a/macros.xml Wed Feb 05 19:39:47 2020 -0500
+++ b/macros.xml Wed Mar 11 06:53:35 2020 -0400

@@ -1,6 +1,6 @@
<macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
-    <token name="@WRAPPER_VERSION@">3.4.1</token>
+    <token name="@WRAPPER_VERSION@">3.4.2</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $range_min:$range_max

diff -r 1e622e371512 -r c543c41377dd static/images/hicDetectLoops.png

Binary file static/images/hicDetectLoops.png has changed

diff -r 1e622e371512 -r c543c41377dd static/images/plot_svl.png

Binary file static/images/plot_svl.png has changed

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/background.bed
--- a/test-data/cHi-C/background.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b'@@ -1,1002 +0,0 @@\n-Relative position\tsize nbinom\tprob nbinom\tmax value\tmean value\n--500000\t58.254577634279\t0.998604709282\t1.333333333333\t0.000105073709\n--499000\t10.000013353187\t0.991925224088\t1.500000000000\t0.000105073709\n--498000\t72.266262784304\t0.998828265884\t1.200000000000\t0.000111077921\n--497000\t51.093422441771\t0.998183086351\t1.000000000000\t0.000120084239\n--496000\t86.575220693033\t0.998899865570\t0.800000000000\t0.000123086345\n--495000\t72.441590407550\t0.998655447638\t0.800000000000\t0.000126088451\n--494000\t75.085350270547\t0.998668414055\t1.000000000000\t0.000129090557\n--493000\t71.967411178924\t0.998612779641\t1.000000000000\t0.000129090557\n--492000\t77.026231982211\t0.998763649786\t1.200000000000\t0.000123086345\n--491000\t96.154018360868\t0.999129584825\t1.000000000000\t0.000108075815\n--490000\t70.641792331241\t0.998918479365\t1.400000000000\t0.000099069497\n--489000\t72.297114570842\t0.998971709245\t0.800000000000\t0.000096067391\n--488000\t55.276417890737\t0.998907322028\t0.800000000000\t0.000078054755\n--487000\t75.866231077639\t0.999020037562\t0.600000000000\t0.000096067391\n--486000\t77.908114872120\t0.999075493568\t0.600000000000\t0.000093065285\n--485000\t70.196050128375\t0.998940963837\t0.600000000000\t0.000096067391\n--484000\t48.306835304302\t0.998789125810\t0.600000000000\t0.000078054755\n--483000\t65.826727385050\t0.999115985283\t0.600000000000\t0.000075052649\n--482000\t10.000003651221\t0.996523342626\t0.400000000000\t0.000045031590\n--481000\t48.188933357556\t0.999179280048\t0.400000000000\t0.000051035802\n--480000\t10.000001173914\t0.997216871755\t0.400000000000\t0.000036025272\n--479000\t10.000002160096\t0.996985563716\t0.400000000000\t0.000039027378\n--478000\t61.980720096540\t0.999287603012\t0.800000000000\t0.000057040014\n--477000\t47.193502172887\t0.999138448161\t0.600000000000\t0.000054037908\n--476000\t75.435666576826\t0.999477638616\t0.600000000000\t0.000051035802\n--475000\t83.258498044933\t0.999385868055\t0.600000000000\t0.000066046332\n--474000\t64.452927063111\t0.999206823435\t0.600000000000\t0.000066046332\n--473000\t68.592799621533\t0.999390093904\t0.600000000000\t0.000054037908\n--472000\t48.567204011739\t0.999139405277\t0.600000000000\t0.000054037908\n--471000\t10.000004448331\t0.996292395667\t0.600000000000\t0.000048033696\n--470000\t10.000000920405\t0.995831238986\t1.400000000000\t0.000054037908\n--469000\t10.000003872489\t0.994909340544\t1.400000000000\t0.000066046332\n--468000\t63.250123985231\t0.999022818205\t1.400000000000\t0.000081056861\n--467000\t51.399551404579\t0.998558644000\t1.400000000000\t0.000096067391\n--466000\t64.883458129266\t0.998762977849\t1.000000000000\t0.000105073709\n--465000\t86.383451689662\t0.999139519880\t0.800000000000\t0.000096067391\n--464000\t64.657320565128\t0.998830168725\t1.000000000000\t0.000099069497\n--463000\t69.011442263596\t0.998889631783\t1.000000000000\t0.000099069497\n--462000\t120.365580780362\t0.999304923056\t1.000000000000\t0.000108075815\n--461000\t83.873478804403\t0.999085832019\t1.000000000000\t0.000099069497\n--460000\t76.791436688795\t0.998822607239\t0.800000000000\t0.000117082133\n--459000\t71.300309154477\t0.998707418591\t1.000000000000\t0.000120084239\n--458000\t70.551044686671\t0.998794143443\t0.600000000000\t0.000111077921\n--457000\t88.657625851365\t0.999084917164\t0.800000000000\t0.000105073709\n--456000\t66.985331452249\t0.998825498193\t0.800000000000\t0.000102071603\n--455000\t212.376735013798\t0.999710065148\t0.600000000000\t0.000078054755\n--454000\t62.703317289439\t0.999261443476\t0.600000000000\t0.000060042120\n--453000\t45.696967611307\t0.998932417121\t0.600000000000\t0.000063044226\n--452000\t82.313181248075\t0.999548168551\t0.600000000000\t0.000048033696\n--451000\t61.955802866608\t0.999249835457\t0.600000000000\t0.000060042120\n--450000\t71.163546816639\t0.999118429295\t1.000000000000\t0.000081056861\n--449000\t57.404577886000\t0.998868956077\t1.000000000000\t0.000084058967\n--448000\t78.889496868591\t0.999175114488\t1.000000000000\t0.000084058967\n--447000\t59.455705064746\t0.998872066360\t1.000000000000\t0.000087061073\n--446000\t69.521205032032\t0.998763823049\t1.000000000000\t0.000111077921\n--445000\t99.901425243691\t0.999325366218\t0.800000000000\t0.0000870'..b'92515295592\t0.998432747334\t1.400000000000\t0.000222155842\n-444000\t82.443622273366\t0.997719903159\t1.400000000000\t0.000243170584\n-445000\t70.933399279725\t0.997396373546\t1.400000000000\t0.000243170584\n-446000\t95.161892262226\t0.998095770809\t1.600000000000\t0.000234164266\n-447000\t124.614672839908\t0.998565069417\t1.200000000000\t0.000231162160\n-448000\t77.860490008359\t0.997704488044\t1.400000000000\t0.000231162160\n-449000\t65.217115835699\t0.997403641809\t1.400000000000\t0.000219153736\n-450000\t75.445932132698\t0.998007293338\t1.200000000000\t0.000198138995\n-451000\t95.181162634818\t0.998473187366\t1.000000000000\t0.000186130571\n-452000\t94.977236808895\t0.998461455130\t1.000000000000\t0.000189132677\n-453000\t71.519354123232\t0.997988008873\t1.000000000000\t0.000186130571\n-454000\t75.038048093362\t0.998148510684\t1.000000000000\t0.000183128465\n-455000\t66.094167095466\t0.997699897371\t1.000000000000\t0.000198138995\n-456000\t111.325708146664\t0.998498182775\t1.000000000000\t0.000216151630\n-457000\t102.171886886530\t0.998454607629\t1.000000000000\t0.000204143206\n-458000\t88.125308869888\t0.998313915544\t1.000000000000\t0.000192134783\n-459000\t70.605027521073\t0.997930191387\t0.800000000000\t0.000189132677\n-460000\t100.268739339170\t0.998772290781\t0.600000000000\t0.000159111617\n-461000\t74.543018827171\t0.998473634038\t0.800000000000\t0.000147103193\n-462000\t63.337319446090\t0.998204073767\t0.800000000000\t0.000147103193\n-463000\t117.089896011864\t0.999027727546\t0.800000000000\t0.000147103193\n-464000\t91.138003901288\t0.998496746777\t1.800000000000\t0.000177124253\n-465000\t92.914491189803\t0.998350787907\t1.800000000000\t0.000198138995\n-466000\t52.209334348546\t0.997159438011\t2.400000000000\t0.000192134783\n-467000\t77.918569531358\t0.998034146232\t2.800000000000\t0.000198138995\n-468000\t40.028010375624\t0.996410794913\t2.800000000000\t0.000186130571\n-469000\t52.807401795042\t0.997408431862\t1.400000000000\t0.000177124253\n-470000\t105.325058737937\t0.998676526339\t1.400000000000\t0.000180126359\n-471000\t97.395447231439\t0.998474152554\t1.000000000000\t0.000192134783\n-472000\t71.036732364957\t0.998055374489\t1.200000000000\t0.000183128465\n-473000\t58.839853998831\t0.997768804625\t1.200000000000\t0.000174122147\n-474000\t109.506948227434\t0.998942877974\t1.000000000000\t0.000150105299\n-475000\t73.687080792836\t0.998676219719\t0.600000000000\t0.000126088451\n-476000\t86.562200266338\t0.998926533547\t0.600000000000\t0.000120084239\n-477000\t78.601283549403\t0.998670347780\t0.600000000000\t0.000135094769\n-478000\t77.287682759273\t0.998311780993\t1.000000000000\t0.000168117935\n-479000\t80.196363250368\t0.998336155363\t0.800000000000\t0.000174122147\n-480000\t95.618679354949\t0.998538823715\t0.800000000000\t0.000180126359\n-481000\t71.324679124414\t0.998079961192\t1.000000000000\t0.000177124253\n-482000\t98.947326582471\t0.998662082026\t1.200000000000\t0.000171120041\n-483000\t98.312778915279\t0.998677055532\t1.000000000000\t0.000168117935\n-484000\t80.536358888257\t0.998500685590\t1.200000000000\t0.000156109511\n-485000\t75.299149742118\t0.998174557637\t1.200000000000\t0.000177124253\n-486000\t80.676043504302\t0.998160484267\t1.600000000000\t0.000192134783\n-487000\t65.456290718619\t0.997731312445\t1.600000000000\t0.000192134783\n-488000\t135.605664962437\t0.998837097471\t1.400000000000\t0.000204143206\n-489000\t78.041126983216\t0.997890938542\t1.600000000000\t0.000213149524\n-490000\t73.842941938827\t0.998020155259\t1.200000000000\t0.000192134783\n-491000\t135.330452041151\t0.998884251454\t1.000000000000\t0.000195136889\n-492000\t70.441325198247\t0.997891524929\t1.000000000000\t0.000192134783\n-493000\t93.145208276513\t0.998579085962\t1.200000000000\t0.000171120041\n-494000\t93.195291870240\t0.998579645775\t1.200000000000\t0.000171120041\n-495000\t66.167995861224\t0.997615723218\t1.200000000000\t0.000204143206\n-496000\t68.869469387443\t0.998039511367\t1.200000000000\t0.000174122147\n-497000\t61.393255588548\t0.997958646123\t1.400000000000\t0.000162113723\n-498000\t64.393702971434\t0.998089554455\t1.200000000000\t0.000159111617\n-499000\t64.222140571019\t0.998102497389\t1.000000000000\t0.000157610564\n-500000\t10.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/background.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/background.txt Wed Mar 11 06:53:35 2020 -0400

b'@@ -0,0 +1,1002 @@\n+Relative position\tsize nbinom\tprob nbinom\tmax value\tmean value\n+-500000\t58.254577634279\t0.998604709282\t1.333333333333\t0.000105073709\n+-499000\t10.000013353187\t0.991925224088\t1.500000000000\t0.000105073709\n+-498000\t72.266262784304\t0.998828265884\t1.200000000000\t0.000111077921\n+-497000\t51.093422441771\t0.998183086351\t1.000000000000\t0.000120084239\n+-496000\t86.575220693033\t0.998899865570\t0.800000000000\t0.000123086345\n+-495000\t72.441590407550\t0.998655447638\t0.800000000000\t0.000126088451\n+-494000\t75.085350270547\t0.998668414055\t1.000000000000\t0.000129090557\n+-493000\t71.967411178924\t0.998612779641\t1.000000000000\t0.000129090557\n+-492000\t77.026231982211\t0.998763649786\t1.200000000000\t0.000123086345\n+-491000\t96.154018360868\t0.999129584825\t1.000000000000\t0.000108075815\n+-490000\t70.641792331241\t0.998918479365\t1.400000000000\t0.000099069497\n+-489000\t72.297114570842\t0.998971709245\t0.800000000000\t0.000096067391\n+-488000\t55.276417890737\t0.998907322028\t0.800000000000\t0.000078054755\n+-487000\t75.866231077639\t0.999020037562\t0.600000000000\t0.000096067391\n+-486000\t77.908114872120\t0.999075493568\t0.600000000000\t0.000093065285\n+-485000\t70.196050128375\t0.998940963837\t0.600000000000\t0.000096067391\n+-484000\t48.306835304302\t0.998789125810\t0.600000000000\t0.000078054755\n+-483000\t65.826727385050\t0.999115985283\t0.600000000000\t0.000075052649\n+-482000\t10.000003651221\t0.996523342626\t0.400000000000\t0.000045031590\n+-481000\t48.188933357556\t0.999179280048\t0.400000000000\t0.000051035802\n+-480000\t10.000001173914\t0.997216871755\t0.400000000000\t0.000036025272\n+-479000\t10.000002160096\t0.996985563716\t0.400000000000\t0.000039027378\n+-478000\t61.980720096540\t0.999287603012\t0.800000000000\t0.000057040014\n+-477000\t47.193502172887\t0.999138448161\t0.600000000000\t0.000054037908\n+-476000\t75.435666576826\t0.999477638616\t0.600000000000\t0.000051035802\n+-475000\t83.258498044933\t0.999385868055\t0.600000000000\t0.000066046332\n+-474000\t64.452927063111\t0.999206823435\t0.600000000000\t0.000066046332\n+-473000\t68.592799621533\t0.999390093904\t0.600000000000\t0.000054037908\n+-472000\t48.567204011739\t0.999139405277\t0.600000000000\t0.000054037908\n+-471000\t10.000004448331\t0.996292395667\t0.600000000000\t0.000048033696\n+-470000\t10.000000920405\t0.995831238986\t1.400000000000\t0.000054037908\n+-469000\t10.000003872489\t0.994909340544\t1.400000000000\t0.000066046332\n+-468000\t63.250123985231\t0.999022818205\t1.400000000000\t0.000081056861\n+-467000\t51.399551404579\t0.998558644000\t1.400000000000\t0.000096067391\n+-466000\t64.883458129266\t0.998762977849\t1.000000000000\t0.000105073709\n+-465000\t86.383451689662\t0.999139519880\t0.800000000000\t0.000096067391\n+-464000\t64.657320565128\t0.998830168725\t1.000000000000\t0.000099069497\n+-463000\t69.011442263596\t0.998889631783\t1.000000000000\t0.000099069497\n+-462000\t120.365580780362\t0.999304923056\t1.000000000000\t0.000108075815\n+-461000\t83.873478804403\t0.999085832019\t1.000000000000\t0.000099069497\n+-460000\t76.791436688795\t0.998822607239\t0.800000000000\t0.000117082133\n+-459000\t71.300309154477\t0.998707418591\t1.000000000000\t0.000120084239\n+-458000\t70.551044686671\t0.998794143443\t0.600000000000\t0.000111077921\n+-457000\t88.657625851365\t0.999084917164\t0.800000000000\t0.000105073709\n+-456000\t66.985331452249\t0.998825498193\t0.800000000000\t0.000102071603\n+-455000\t212.376735013798\t0.999710065148\t0.600000000000\t0.000078054755\n+-454000\t62.703317289439\t0.999261443476\t0.600000000000\t0.000060042120\n+-453000\t45.696967611307\t0.998932417121\t0.600000000000\t0.000063044226\n+-452000\t82.313181248075\t0.999548168551\t0.600000000000\t0.000048033696\n+-451000\t61.955802866608\t0.999249835457\t0.600000000000\t0.000060042120\n+-450000\t71.163546816639\t0.999118429295\t1.000000000000\t0.000081056861\n+-449000\t57.404577886000\t0.998868956077\t1.000000000000\t0.000084058967\n+-448000\t78.889496868591\t0.999175114488\t1.000000000000\t0.000084058967\n+-447000\t59.455705064746\t0.998872066360\t1.000000000000\t0.000087061073\n+-446000\t69.521205032032\t0.998763823049\t1.000000000000\t0.000111077921\n+-445000\t99.901425243691\t0.999325366218\t0.800000000000\t0.0000870'..b'92515295592\t0.998432747334\t1.400000000000\t0.000222155842\n+444000\t82.443622273366\t0.997719903159\t1.400000000000\t0.000243170584\n+445000\t70.933399279725\t0.997396373546\t1.400000000000\t0.000243170584\n+446000\t95.161892262226\t0.998095770809\t1.600000000000\t0.000234164266\n+447000\t124.614672839908\t0.998565069417\t1.200000000000\t0.000231162160\n+448000\t77.860490008359\t0.997704488044\t1.400000000000\t0.000231162160\n+449000\t65.217115835699\t0.997403641809\t1.400000000000\t0.000219153736\n+450000\t75.445932132698\t0.998007293338\t1.200000000000\t0.000198138995\n+451000\t95.181162634818\t0.998473187366\t1.000000000000\t0.000186130571\n+452000\t94.977236808895\t0.998461455130\t1.000000000000\t0.000189132677\n+453000\t71.519354123232\t0.997988008873\t1.000000000000\t0.000186130571\n+454000\t75.038048093362\t0.998148510684\t1.000000000000\t0.000183128465\n+455000\t66.094167095466\t0.997699897371\t1.000000000000\t0.000198138995\n+456000\t111.325708146664\t0.998498182775\t1.000000000000\t0.000216151630\n+457000\t102.171886886530\t0.998454607629\t1.000000000000\t0.000204143206\n+458000\t88.125308869888\t0.998313915544\t1.000000000000\t0.000192134783\n+459000\t70.605027521073\t0.997930191387\t0.800000000000\t0.000189132677\n+460000\t100.268739339170\t0.998772290781\t0.600000000000\t0.000159111617\n+461000\t74.543018827171\t0.998473634038\t0.800000000000\t0.000147103193\n+462000\t63.337319446090\t0.998204073767\t0.800000000000\t0.000147103193\n+463000\t117.089896011864\t0.999027727546\t0.800000000000\t0.000147103193\n+464000\t91.138003901288\t0.998496746777\t1.800000000000\t0.000177124253\n+465000\t92.914491189803\t0.998350787907\t1.800000000000\t0.000198138995\n+466000\t52.209334348546\t0.997159438011\t2.400000000000\t0.000192134783\n+467000\t77.918569531358\t0.998034146232\t2.800000000000\t0.000198138995\n+468000\t40.028010375624\t0.996410794913\t2.800000000000\t0.000186130571\n+469000\t52.807401795042\t0.997408431862\t1.400000000000\t0.000177124253\n+470000\t105.325058737937\t0.998676526339\t1.400000000000\t0.000180126359\n+471000\t97.395447231439\t0.998474152554\t1.000000000000\t0.000192134783\n+472000\t71.036732364957\t0.998055374489\t1.200000000000\t0.000183128465\n+473000\t58.839853998831\t0.997768804625\t1.200000000000\t0.000174122147\n+474000\t109.506948227434\t0.998942877974\t1.000000000000\t0.000150105299\n+475000\t73.687080792836\t0.998676219719\t0.600000000000\t0.000126088451\n+476000\t86.562200266338\t0.998926533547\t0.600000000000\t0.000120084239\n+477000\t78.601283549403\t0.998670347780\t0.600000000000\t0.000135094769\n+478000\t77.287682759273\t0.998311780993\t1.000000000000\t0.000168117935\n+479000\t80.196363250368\t0.998336155363\t0.800000000000\t0.000174122147\n+480000\t95.618679354949\t0.998538823715\t0.800000000000\t0.000180126359\n+481000\t71.324679124414\t0.998079961192\t1.000000000000\t0.000177124253\n+482000\t98.947326582471\t0.998662082026\t1.200000000000\t0.000171120041\n+483000\t98.312778915279\t0.998677055532\t1.000000000000\t0.000168117935\n+484000\t80.536358888257\t0.998500685590\t1.200000000000\t0.000156109511\n+485000\t75.299149742118\t0.998174557637\t1.200000000000\t0.000177124253\n+486000\t80.676043504302\t0.998160484267\t1.600000000000\t0.000192134783\n+487000\t65.456290718619\t0.997731312445\t1.600000000000\t0.000192134783\n+488000\t135.605664962437\t0.998837097471\t1.400000000000\t0.000204143206\n+489000\t78.041126983216\t0.997890938542\t1.600000000000\t0.000213149524\n+490000\t73.842941938827\t0.998020155259\t1.200000000000\t0.000192134783\n+491000\t135.330452041151\t0.998884251454\t1.000000000000\t0.000195136889\n+492000\t70.441325198247\t0.997891524929\t1.000000000000\t0.000192134783\n+493000\t93.145208276513\t0.998579085962\t1.200000000000\t0.000171120041\n+494000\t93.195291870240\t0.998579645775\t1.200000000000\t0.000171120041\n+495000\t66.167995861224\t0.997615723218\t1.200000000000\t0.000204143206\n+496000\t68.869469387443\t0.998039511367\t1.200000000000\t0.000174122147\n+497000\t61.393255588548\t0.997958646123\t1.400000000000\t0.000162113723\n+498000\t64.393702971434\t0.998089554455\t1.200000000000\t0.000159111617\n+499000\t64.222140571019\t0.998102497389\t1.000000000000\t0.000157610564\n+500000\t10.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,4 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 14331000 14344000 Eya1 673.0 43000 11.20000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,4 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14331000 14344000 Eya1 673.0 43000 11.20000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,5 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 19122000 19131000 Tfap2d 472.0 37000   10.20000
-chr1 19188000 19232000 Tfap2d 472.0 138000   23.40000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,5 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 19122000 19131000 Tfap2d 472.0 37000   10.20000
+chr1 19188000 19232000 Tfap2d 472.0 138000   23.40000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,6 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 4512000 4529000 Sox17 810.0 41000   24.80000
-chr1 4534000 4544000 Sox17 810.0 56000    7.00000
-chr1 4585000 4590000 Sox17 810.0 102000    8.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,6 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 4512000 4529000 Sox17 810.0 41000   24.80000
+chr1 4534000 4544000 Sox17 810.0 56000    7.00000
+chr1 4585000 4590000 Sox17 810.0 102000    8.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,4 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 14331000 14344000 Eya1 832.0 43000 22.80000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,4 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14331000 14344000 Eya1 832.0 43000 22.80000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,5 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 19122000 19131000 Tfap2d 800.0 37000 15.80000
-chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,5 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 19122000 19131000 Tfap2d 800.0 37000 15.80000
+chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,6 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 4512000 4529000 Sox17 978.0 41000   33.20000
-chr1 4534000 4544000 Sox17 978.0 56000   13.20000
-chr1 4585000 4590000 Sox17 978.0 102000    2.40000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,6 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 4512000 4529000 Sox17 978.0 41000   33.20000
+chr1 4534000 4544000 Sox17 978.0 56000   13.20000
+chr1 4585000 4590000 Sox17 978.0 102000    2.40000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,6 +1,6 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
-MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
-MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
-MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
\ No newline at end of file
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,4 +0,0 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 14331000 14344000 Eya1 832.0 43000 22.80000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,4 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14331000 14344000 Eya1 832.0 43000 22.80000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,10 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,10 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,12 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442
-chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,12 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
-chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,13 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by chi2 test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171
-chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
-chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,13 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,10 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,10 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,12 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206
-chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,12 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
-chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,13 +0,0 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
-# This file contains the p-values computed by fisher test
-# To test the smoothed (float) values they were rounded up to the next integer
-#
-# Alpha level 0.5
-# Degrees of freedom 1
-#
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177
-chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
-chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,13 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt
--- a/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,3 +1,3 @@
-FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
-FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
-FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
\ No newline at end of file
+FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt
+FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt
+FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,6 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473
-chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000
-chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946
-chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,6 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473
+chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000
+chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946
+chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_8dty7wuh/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 14274000 14278000
-chr1 14296000 14298000
-chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_8dty7wuh/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000
-chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605
-chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109
-chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783
-chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109
-chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000
+chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605
+chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109
+chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783
+chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109
+chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,10 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
-# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: loose p-value with 0.5
-# Used p-value: 0.2
-#
-chr1 14274000 14279000
-chr1 14285000 14308000
-chr1 14310000 14322000
-chr1 14361000 14395000
-chr1 14491000 14500000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 14274000 14279000
+chr1 14285000 14308000
+chr1 14310000 14322000
+chr1 14361000 14395000
+chr1 14491000 14500000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,3 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,3 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 14274000 14278000
-chr1 14296000 14298000
-chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,6 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 14295000 14298000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,6 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14295000 14298000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.00000000000000000000 4.06818820852600016025 28.80000000000000071054
-chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.00000021753312740014 3.62722049649999966903 10.59999999999999964473
-chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00000013791919284412 9.61739201792699915927 18.60000000000000142109
-chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.19640940181488197869 7.28507499155399962376 7.79999999999999982236
-chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.19195463066672580066 14.41899403645599875290 5.59999999999999964473
-chr1 19097000 19098000 Tfap2d 472.0 4000 0.02542372881399999895 0.00000000000002398082 1.62514514601700010843 12.00000000000000000000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.00000000000000000000 4.06818820852600016025 28.80000000000000071054
+chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.00000021753312740014 3.62722049649999966903 10.59999999999999964473
+chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00000013791919284412 9.61739201792699915927 18.60000000000000142109
+chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.19640940181488197869 7.28507499155399962376 7.79999999999999982236
+chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.19195463066672580066 14.41899403645599875290 5.59999999999999964473
+chr1 19097000 19098000 Tfap2d 472.0 4000 0.02542372881399999895 0.00000000000002398082 1.62514514601700010843 12.00000000000000000000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,7 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000000034537894766 11.55191083898800030738 27.80000000000000071054
-chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000
-chr1 4484000 4485000 Sox17 810.0 -3000 0.03283950617300000069 0.00000000000000000000 1.52393745982299999575 26.60000000000000142109
-chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.00000762924143549171 1.65903762227799989049 8.00000000000000000000
-chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.00092861255189025105 1.57677828943600006895 6.20000000000000017764

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,7 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000000034537894766 11.55191083898800030738 27.80000000000000071054
+chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000
+chr1 4484000 4485000 Sox17 810.0 -3000 0.03283950617300000069 0.00000000000000000000 1.52393745982299999575 26.60000000000000142109
+chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.00000762924143549171 1.65903762227799989049 8.00000000000000000000
+chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.00092861255189025105 1.57677828943600006895 6.20000000000000017764

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,3 +1,3 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
\ No newline at end of file
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 14274000 14278000
-chr1 14296000 14298000
-chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,11 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 19089000 19091000
-chr1 19097000 19098000
-chr1 19104000 19106000
-chr1 19109000 19114000
-chr1 19125000 19129000
-chr1 19227000 19233000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,11 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 19089000 19091000
+chr1 19097000 19098000
+chr1 19104000 19106000
+chr1 19109000 19114000
+chr1 19125000 19129000
+chr1 19227000 19233000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,9 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
-# Mode: x-fold background with 1.5
-# Used p-value: 0.2
-#
-chr1 4484000 4485000
-chr1 4499000 4502000
-chr1 4509000 4515000
-chr1 4585000 4590000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,9 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 4484000 4485000
+chr1 4499000 4502000
+chr1 4509000 4515000
+chr1 4585000 4590000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,3 +1,3 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
\ No newline at end of file
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,2 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,2 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,3 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,3 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,3 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,3 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,3 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,3 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,4 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054
-chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,4 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054
+chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,4 +0,0 @@
-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
-#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674
-chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,4 @@
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674
+chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,6 +1,6 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
-MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
-MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
-MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
\ No newline at end of file
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,6 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-# Mode: loose p-value with 0.5
-# Used p-value: 0.2
-#
-chr1 14331000 14344000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,6 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 14331000 14344000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,7 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
-# Mode: loose p-value with 0.5
-# Used p-value: 0.2
-#
-chr1 19122000 19131000
-chr1 19188000 19232000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,7 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 19122000 19131000
+chr1 19188000 19232000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,8 +0,0 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
-# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
-# Mode: loose p-value with 0.5
-# Used p-value: 0.2
-#
-chr1 4512000 4529000
-chr1 4534000 4544000
-chr1 4585000 4590000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt Wed Mar 11 06:53:35 2020 -0400

@@ -0,0 +1,8 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 4512000 4529000
+chr1 4534000 4544000
+chr1 4585000 4590000

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,3 +1,3 @@
-FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
-FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
-FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
\ No newline at end of file
+FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt
+FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt
+FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt
\ No newline at end of file

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt
--- a/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,3 +1,3 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt
--- a/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Wed Feb 05 19:39:47 2020 -0500
+++ b/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Wed Mar 11 06:53:35 2020 -0400

@@ -1,6 +1,6 @@
-FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
-MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
-FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
-MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
-FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
-MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t141350"..b'44260\t0.800000000000\n-chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n-chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n-chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n-chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n-chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n-chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n-chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n-chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n-chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n-chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n-chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n-chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n-chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n-chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n-chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n-chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n-chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n-chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n-chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n-chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n-chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n-chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n-chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n-chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t141350"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n-chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n-chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n-chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n-chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n-chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n-chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n-chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n-chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n-chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n-chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n-chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n-chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n-chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n-chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n-chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n-chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n-chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n-chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n-chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n-chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n-chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n-chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n-chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n-chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n-chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n-chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n-chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n-chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n-chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n-chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n-chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n-chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n-chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n-chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n-chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n-chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n-chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n-chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n-chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n-chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n-chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n-chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n-chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n-chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n-chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t141350"..b'96844\t1.600000000000\n-chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n-chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n-chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n-chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n-chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n-chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n-chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n-chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n-chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n-chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n-chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n-chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n-chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n-chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n-chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n-chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n-chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n-chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n-chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n-chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n-chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n-chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n-chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n-chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n-chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n-chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n-chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t141350"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n-chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n-chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n-chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n-chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n-chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n-chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n-chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n-chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n-chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n-chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n-chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n-chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n-chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n-chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n-chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n-chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n-chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n-chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n-chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n-chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n-chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n-chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n-chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n-chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n-chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n-chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n-chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n-chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n-chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n-chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n-chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n-chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n-chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n-chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n-chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n-chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n-chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n-chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n-chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n-chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n-chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n-chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n-chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n-chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n-chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n-chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n-chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n-chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n-chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n-chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n-chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n-chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n-chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n-chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n-chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n-chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n-chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n-chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n-chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n-chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n-chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n-chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14135000\t14136000\tEya1\t673.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'44260\t0.800000000000\n-chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n-chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n-chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n-chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n-chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n-chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n-chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n-chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n-chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n-chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n-chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n-chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n-chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n-chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n-chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n-chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n-chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n-chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n-chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n-chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n-chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n-chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n-chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n-chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14135000\t14136000\tEya1\t673.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n-chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n-chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n-chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n-chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n-chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n-chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n-chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n-chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n-chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n-chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n-chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n-chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n-chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n-chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t432300"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n-chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n-chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n-chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n-chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n-chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n-chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n-chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n-chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n-chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n-chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n-chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n-chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n-chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n-chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n-chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n-chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n-chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n-chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n-chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n-chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n-chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n-chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n-chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n-chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n-chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n-chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n-chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n-chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n-chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n-chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n-chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t432300"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14135000\t14136000\tEya1\t832.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'96844\t1.600000000000\n-chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n-chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n-chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n-chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n-chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n-chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n-chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n-chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n-chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n-chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n-chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n-chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n-chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n-chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n-chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n-chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n-chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n-chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n-chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n-chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n-chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n-chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n-chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n-chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n-chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n-chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n-chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14135000\t14136000\tEya1\t832.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n-chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n-chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n-chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n-chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n-chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n-chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n-chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n-chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n-chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n-chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n-chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n-chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n-chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n-chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n-chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n-chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n-chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n-chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n-chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n-chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n-chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n-chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n-chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n-chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n-chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n-chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n-chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n-chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n-chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:39:47 2020 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t432300"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n-chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n-chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n-chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n-chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n-chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n-chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n-chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n-chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n-chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n-chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n-chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n-chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n-chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n-chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n-chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n-chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n-chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n-chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n-chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n-chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n-chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n-chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n-chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n-chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n-chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n-chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n-chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n-chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n-chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n-chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n-chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n-chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n-chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'

diff -r 1e622e371512 -r c543c41377dd test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 06:53:35 2020 -0400

b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t432300"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'