| Previous changeset 1:ccd3fd69df1a (2012-03-31) Next changeset 3:4e9e1625dae3 (2012-03-31) |
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modified:
bed_to_bigwig.xml |
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| diff -r ccd3fd69df1a -r c5bf1ec88e4e bed_to_bigwig.xml --- a/bed_to_bigwig.xml Sat Mar 31 14:04:04 2012 -0400 +++ b/bed_to_bigwig.xml Sat Mar 31 14:04:50 2012 -0400 |
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| @@ -20,12 +20,13 @@ <param name="input" type="data" format="bam" label="Input file"/> </when> </conditional> - <param name="genome" type="select" label="Select genome"> - <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm9.genome" selected="true">mm9</option> - <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm8.genome">mm8</option> - <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg18.genome">hg18</option> - <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg19.genome">hg19</option> - </param> + <param name="genome" type="select" label="Select chromsome size file" > + <options from_file="chrsize.loc"> + <column name="name" index="0"/> + <column name="value" index="1"/> + </options> + </param> + <param name="sorted" label="Check if the input is sorted" type="boolean" truevalue="sorted" falsevalue="none" checked="False"/> <param name="split" label="Split junctions" help="Treat 'split' BAM or BED12 entries as distinct BED intervals." type="boolean" truevalue="-split" falsevalue="" checked="False"/> </inputs> |